RNA id: XM_036938340.1


Basic Information

Item Value
RNA id XM_036938340.1
length 5053
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC118936508
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13193145 ~ 13241855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacagcaaagcaCGTTGGTGGGTGTGATAACTGCGGGCTGAAGTCTACAGCGGCGCTTGCCTGTCAGTGCCAGTGACGTGGAGAGGCAGAAGTCAAGCAACTCTTCTGATTTCTCAAGACAATAGAAGATTCAAAATAGGTATTTATTGTCGACTTGACATTGCGGGCAACCTTTAAAAGTGGACCTTATTGCGCCAGCGAACGAAGCACGTGGCTTCACAGGGAGAGGGGAAAATGCAAAAAAGCTTGTCAGTGTATGACAGTGATGGCTCAACATTTGCACCTCTGGTGGTCATCGAGTTGGTTTCGGAAACCAAAGAGGAAGCCATCGCATGGTTACTAAACAGGGTCAGAGACAAGCAGCAAGATGGAGGGGCTGAGCTGCTGGTGGAGCAGCTGACTCCAGGGGCTCAGGGCACGGAGAAGGACAATCCCAATGTGTATGTGGTGGGGGCCTCCTGGCAAAGGCTCCTATATGGAGCTGAGGACGTGGGCCTCTTCAAGGAGTTCAACGACGGCTCCATGAGAGGCTTCACGTATGCCAACAAGCACAACTTCAAAGAGTTCCAAGGTGATGGGGATGGTTTTCTGAGCATGGCAGAGTGTCAATACATCATAAAACATGAACTGGACAACCTGAGGGCCAAGGATGAGGCCCACGTGCCTGGATATCCGAAGATGAAACTGTATCCAGGGAAGTCAGTCATACGCAGAATGCAATCAAAGGGGATCCTTGTCCAAGTTTTCCCTCTGCATGAGAAGGAGGAACTCAAAAGGCTTTCCTTTTCCTGGTTCAAAAAGATCAAGTTGTCCTTCCAGCCTCTTGATGACATCAGGCACTACTTTGGTGAGGGTATGGCACTCTACTTTGGTTTCCTGGAGTATTTCACCTTGGCCCTGATCCCCATGGCCCTCATAGGGATACCATACTACCTCTTCGACTGGGAGGACTACGACAAGTTCACGGTGTTCGCCGGCTTCAACCTGGTGTGGTGCACGGTGATCCTGGAGTTATGGAAGCGCCTCAGCGCTTCGCTGGCGTACGGCTGGGGCACCCTGAGCAGGAAGAAAGCCTTCGAGGAGCCGAGGCCGGGCTTCCACGGCGTCTTGGGCGTCAATCCCGTCACGGGGCGGGCGGAGCCACTCTACTCAAACGCCAAGCGTCAGCTGAGGATCTACCTGGTGTCTGTTCCCTTTGTGCTGCTGTGCCTCTACCTGTCTCTGTACGTCATGATGATCTACTTTGACATGGAGGGCTGGGCCTTGATGATCCATGATGAGGAGCCTACCTTCTGGACAGGACTGCTACTTTTTATCCCTAGTATTATCTACGCTGTGGTTATAGAGATCATGAACCTCATATACCGCTATGCTGCAGAGTTCCTCACTGGCTGGGAAAACCACAGGCTTGAGTCAACATTTCAAAATCACCTTGTCCTTAAAGTACTGGTGTTCAACTTCTTCAACTGTTTTGCCTCCCTATTCTACATTGCCTTTGTGATGCAGGATATGGTGCTTCTCAGACAGAGTCTGGCCACGCTGCTGATAACGTCTCAGATCCTGAACCAGATCATGGAGGCCTTCCTGCCCTACTGGCtccagaggaggaggaacaaGAAGGCCCATAAGAGGATGATAAAAACCATGGAAGACAAGGAGCTGCCCCTCTCTGAGCAGGTCAAGCTGGAGGCAGACATGAGCACCTACCTGGGAACATTTGATGACTACCTGGAGCTGTTCCTGCTGTTTGGCTATGTCAGTCTGTTCTCCTGTGTCTACCCTCTGGCCGCGGTGCTGGTGGTGCTCAACAACGTCACAGAGGTCTACTCGGATGCCTTCAAGATGTGCAAGGTGTTCAAAAGACCCTTCTCTGAGCCTGCAGCCAATATAGGGGTGTGGCAGCTTGCCTTTGAGGCCATGAGTGTGATCGCCGTGGTGACCAACTGTGCCTTGATTGGCATGTCCCCCCAAGTCAAGTCCTATTTCCCGGAGTCAGAGACACAGCTCATAATGTGGGTGGTGGGCTTCGAGCACTTCCTCTTGGCCTCCAAGTTCATCCTGACCTTTGTGATCCCAGACGTCCCCAAACACATCCAGATCAAACTGTCACGTCTGGAGTTTGAGTCCCTGGAGGCTCTGAAGAAAAGGAGCCAGGCCCATGGGCGAAAATGCTGGAGGCCTCGGGGATCCCAAAGACTGATAAGtgatgaggagagaagaggccgaTCGTTCAGATACTGACAAGACGAAGATGGGCTAAACTCCAGATGGAACATGCCCTTCCAAAGGAGAAAGATTCACATAGACTGTTTTCTTTACAACACCTCAATTAGCTCATTTATGCATAAAATATCCCAAAGTAAttttctttttatatatatataaacggttGGTTGTTAAACCTGGCTTTATGCTCTTAACCTCTGCACTGTTGCcaggtatttctgtttgttttgctGAGTGTAGTGTATTACCTGCAGATGTCTATACAACATTACTGGATGTGATTAAAACAATCATGAAGACCAGCCTCTAAACTAAAGATTCAGATCTGACCGGAGAACAAGACTTTATGTTAATGTCCTCCGGAAACCACTGTTGGAAATGCATTGCTACGTACCAAATGTAATGTTAAGGCAGGGCTTGACATTCAGGTCAATTTGCAATGGCACACTAGACTAGGCCGAATGGAAGAAATACTGGCACCAGTCAACATCTGGCAGGCAAGTGAATGATGCACGCATAAATTCAACAGCTAGGGATTTTATCTTTCATTTGGGCTGAGCAAGTAGCCTACAGGATTCATACAGACATTGGGAAGTCAAATTCAATGATTTTTCAAGCAATTAATTGTAATTTTGAAGGACTTGCATTTTATATTGAATTGTTGTCATAACCTATCGAAAAAAAATCCCCCCAAAATTAGTAAGCAGAAAAGTATGCATAACAACTTAGAGAATAATGCATGTTTAATTAAGCCTTCCAAATGACATAAACATATTTTACATTCTAAAACCTGTCAGAATAAAGTGGACATTGCCTGACTAATAGACTGTATGTAGATGCTCCCAACACACTAATGATGTCTGTGGCAGATAGTCAGTCTCACCATTTGAAATGTTGAGGGCTTATTGTATCATGTTTTAAAACAAAGTGAGTAAAAACCGGGTTCCCTTTGTAACGGAACGATGTGTATGGAAAACCAACATTCATTCCACTGGTTGTCTTGCTCATAATCACTGCACGTGGTTTTACCGCAAAGATGGCAACAGACCTGCGCGGGAAACAAATGAAAGCAGATAGATCTCTCATAAAAACTGATCAGAAATAAATTCAATCGAGGAATAATTATATTGCAGTGCAACTTCTAAATCGGCTACCTTCAATGACTTTTCTAGGACCAAATAGCCTCGAAGAAATGTCCGATTATCAAGTTAGGCTATTCTATGATGACAATTGCGCAAAGCAAATATTCTACCAAGACGGAACGTTTTATTGCAGGTTTGCATACCTATACTTGCCTTAACATTTATTGGTATTTATCAGACCTTTGAAGATGTTCCCTGCCGCTGTCGGTCTTCAGTGAGCTGCTCCACACAACAATCTCCAGCTAGGCTTAATGTGTAGTTTATGGTGCGCGTGTGATAAATAATCAACATAACGAACTCACAGCTTCAGGAATTCTTTATTATATAGCCTAGATTAAATATAGCATTTTTACAATATTTATTTTCATCAACTGGCCCGGAGGGTTTCCAAAACCTCCCCGGGCCAGCGGGCAGCCCTGAATGTCAGGCCCTGGTTAAGGTGCTAAATAATAGGTCATTGAAGGTGTATGGATGCGGTTGAGGGTAGTATGCTGTATTACATAGACTTTTCATGTTCATGTGGCCATTCTGGAATTGGTGGAGGTGGTTCAGTTTGAGATAGATGGCCTATGGTAATTATATCCAGACTGTATTCCACCAACAGATGACATGAATTACTTTTCAAAAATAGGTTTTCACATTAGACAATAGTTTTAGACCAACAGCTTTGCTTAAAAGCCACTATAGTCAGTTATGGGGTAGGGCTCCATCCAGTATCACTAGGTCTGTCAGAGACGTTATCTAAGTAGAACTGCTTTCAAAATGGAAGTCTTAGGAATTCTGGCATAATTATGTGCTCTAGCATTGAGATCCTTGAAACGTTTACATAGTGTTGCCAGAGTATAATATATGCCAttaagcagacacttttatccaaattGACTTAGACATGCGTCATGATGTATTTATGGCTCCagcaggactcaaacccaggATCCTTGGCGTTGCaggcgccatgctctaccaactgagccacacagccaGGGTGTTATCTGATCCATAGTGATACTACACATGGAGAtacaactgagccacacagccaGGGTGTTATCTGATCCATAGTGATACTACACATGGAGAtacaactgagccacacagaaccacacagccaGGGTATTATCTGATCCATAGTGATACTACACATGGAGATAGGAAAGATCTAATTATCAATGGTGATGCTTCAGTATGCTACAGAGAAGTTGTAAagactggaatggaattaatggaaaccatgtttgattccattccatacatttcaatgagcccatcctcctatagctcctcctaccagcctcctctgtatCATACTGAAGCATGGTATGCTACGTAATGTTAAATACTCCTCACAGCCTGCAACTATCATGGTCATTGTTACTCAGTCTAATCAATGACTATCAATCAGAAGTAGTGATACTTAGAATGTATGTGAGTGGAAATTCATTGATTTTTTAAAAAGTTTATGCTATTAGTCCATGTGCTCTTGAAGACCCCCTCAGAGCGGGCTTGTGCCTTTGACATGACATGCTGTCAAGATTTGTTTTATATGCTATATACTGTACCTACACTCACTACAGTTTGCCATCACAATATCACCAAGTGTTTAAAAATGGTTCAGAACAGCATTATTGAAACCAAACAAACCCAGCATCCCTTTCCTCAAATAAATCTATACAAAACTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131556 lncRNA upstream 2839 13190075 ~ 13190306 (+) True G114620
TU131553 lncRNA upstream 6372 13186078 ~ 13186773 (+) True G114617
TU131542 lncRNA upstream 17060 13175844 ~ 13176085 (+) True G114611
TU131540 lncRNA upstream 18640 13174245 ~ 13174505 (+) True G114609
TU131534 lncRNA upstream 26553 13166364 ~ 13166592 (+) True G114603
TU131586 lncRNA downstream 4907 13246762 ~ 13247908 (+) False G114643
TU131583 lncRNA downstream 5107 13246962 ~ 13248211 (+) False G114643
TU131584 lncRNA downstream 5107 13246962 ~ 13247844 (+) False G114643
TU131585 lncRNA downstream 5107 13246962 ~ 13247908 (+) True G114643
TU131591 lncRNA downstream 17503 13259358 ~ 13259645 (+) True G114648
XM_036938259.1 mRNA upstream 131839 13046879 ~ 13061306 (+) False LOC110507515
XM_036938263.1 mRNA upstream 131839 13046879 ~ 13061306 (+) False LOC110507515
XM_036938270.1 mRNA upstream 131839 13046879 ~ 13061306 (+) False LOC110507515
XM_036938278.1 mRNA upstream 131839 13046879 ~ 13061306 (+) False LOC110507515
XM_036938281.1 mRNA upstream 131839 13046879 ~ 13061306 (+) False LOC110507515
XM_036938407.1 mRNA downstream 83082 13324937 ~ 13329430 (+) False LOC110507612
XM_036938410.1 mRNA downstream 83102 13324957 ~ 13329430 (+) False LOC110507612
XM_036938390.1 mRNA downstream 83106 13324961 ~ 13329430 (+) False LOC110507612
XM_036938394.1 mRNA downstream 83106 13324961 ~ 13330676 (+) False LOC110507612
XM_036938404.1 mRNA downstream 83107 13324962 ~ 13329671 (+) False LOC110507612
TU131145 other upstream 228215 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 430318 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 471830 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 472452 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1483368 11708603 ~ 11709777 (+) True G113396
TU131856 other downstream 380122 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 459755 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 719406 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 900027 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 992659 14234514 ~ 14236854 (+) True G115189

Expression Profile