RNA id: XM_036938366.1


Basic Information

Item Value
RNA id XM_036938366.1
length 3364
RNA type mRNA
GC content 0.57
exon number 6
gene id LOC110513400
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13250306 ~ 13324680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGAACAGAGGGCTAAGCAGCAACGGAGCTACCGGAGCTATGTACAAACATGTGTGTGTAAAGTATCACATGTGCAGAAGGAAGTGGACATCATGGGCACGAAATTAACATCCAACGTGTTGAAGTAAAGTGGACCCACAAGACTGCTTAAAACCCATCCCCAGCCATGGCAGGCTTCAAACGAGGGTATGATGGCAAGATTGCAGGGCTCTATGACCTGGACAAGACGCTGGGCCGGGGCCACTTCGCCGTGGTCAAACTGGCGCGCCACGTCTTCACGGGGGAGAAGGTGGCGGTCAAGGTCATCGACAAGACCAAGTTGGACACAGTTGCCACGGGTCACCTGTTCCAGGAAGTGCGTTGTATGAAGCTGGTACAGCACCCCAACATTGTCCGGCTCTACGAAGTCATCGACACGCAGACCAAGCTCTACCTGATCCTGGAGCTGGGCGACGGAGGAGACATGTTCGATTACATCATGAAGCACGAGGAGGGCCTCAGCGAGGAGCTGGCCAAGAAGTACTTTGCCCAGATCGTCCATGCCATCTCCTACTGCCACCGGCTGCATGTGGTGCACCGTGACCTCAAGCCGGAGAATGTGGTGTTCTTTGAGAAGCAGGGAGTGGTGAAGCTCACTGACTTTGGCTTCAGCAACAAGTTTCAGCCAGGGAAGAAGCTCACCACTAGCTGTGGCTCGCTGGCCTACTCTGCCCCAGAGATCCTGCTGGGAGATGAGTACGATGCTCCGGCCGTAGaTATCTGGAGTCTTGGTGTGATCCTGTTCATGCTGGTGTGTGGACAGCCCCCCTTCCAGGAGGCCAACGACAGCGAGACCCTCACCATGATCATGGACTGTAAATACACTGTACCCACCCACGTCTCCAACGCCTGCAAAGAtcTGGTAGGCCGGATGCTGCAGCGGGACCCAAAGGGCCGTGCGTCTCTGGAGGAGATAGAGAGCCATGCCTGGCTGCAGGGGGTGGACCCGTCCCCAGCCACCAAGTTCAACACCCCCCTGGTGTCTCATAAGAGCCTGTCTGAGGATGAGCACAACGGGATCATACAGCGCATGGTGCTGGGGGACATCGCAGACCGAGAGCCCATAGTAGAAGCCCTGGAGACCAACAAGTACAACCACATCACTGCCACCTACTTCCTGCTGGCTGAGAGGAtcctgagagagaaacaggagaaggAGGTCCAGACACGCTCCTCCAGCCCCAGCAACATCAAGGCCCAGTTCAGGCAGTCCTGGCCGACGAAGATTGACATGCATCAGGACATCGAGGACAGTCTGGCAGCCTCCTCCATCTGCCACGCTGGTGGTCCCCAGTCCCCCGCCCGCAGCGCTGAGAGCCTTCTCAACGGACACCGCACCAAAGGCCTGCTGGAGCTCCGCAGGGACGAGAGCAACGCAGGGGCCTCCGGTGCCCCTGCCCCCGTTTCTGGGCCCCCTAGAGCTGGGGCCACGGCCCCcacaccctccacctcctcagCCAAGCAGCGCAGCTGCCTGTTCAGagtggaggaggatgaagaggaggaagaggacccgTCCCCTCTGTCCACACAAGTGATCCTGCGTCGCAAGGCTCCATCTATCACCAACCGGCTGACCTCCAGGAAGAGTGCCCCAGTCCTCAACCAGATCTTTGAGGAGGAGGGTGAGTCAGACGACGACTTCGACATGGACGAGGGCCTGCCACCCAAACTCAGCCGGCTAAAGATGAACATCGCTGCTGCAGCGGCCGGGTCGCCGGGCACCACTCAGAAACGCTATCACCGCCGCAAGAGCCAAGGCCGCGGCTCGTCCTGCTCCAGCTCAGAGACCAGCGACGACGACTCCGAGAGCCACCGCCGGCGTCTGGACAAGGACACAGGCTTCACCTACAGCTGGAACCGCAGGGACAGCAGTGAGGGCCCGCCTGGAAACTCAGGGGGAAATGGTGGAGGGAGCAGTGGAGGGCAGAGTAAACCCCCCGGGGAGGGGGGCAGTCCTcctggagggggaggtggggggagtAATGACAATGGAGGGAGTGGTAGTAGTGGGGGGGGAGGTGGTAAGGGACAGGGTTCCCCCTCAAGTTGTTCTAACGGCAGCAGTAACCACTCGTCTTCAGGCTCAGGGTCCACGCGGAGACACTGTGCCTCCCGCAGCCCCGGGGCAGCAGAGCTGGTGGAGAGCCTGAAGCTCCTGAGCCTGTGTCTCAGCTCCCAGTTACAGCACAGGGGGAGAAGTGGAGGCCCCGGCCTGGCAGGGGGGATGGGCCAGTTCATCATAGACCCTCAGAACCTGTCCAATAGTCTGTCCAGCAGCCTGTCAGCTGGCAGCGTCAAGACACAGGAGAGGTCCTCTTGGAAGATGTGCATCGGCTCCAACGGCAGCTTGGACCTGGAGTTAGACACCATCGCTCTGCCCACCACTGCTGTCAACACTCCACGGTCATACACAGACCAAACGGCAGCAGCACTTAGCGAACTGGCCCTGGCCACCAAGGAGAATAACAAGCTGAACAACCTGAAAAAGAATGTTCTCCAGCTACCTCTGTGTGAAAAGAGCATCTCTGTGAACATCCAGCGCAGCCCTAGAGAAGGGCTCCTGTGCACCTCTCAGGCCAGCTGCTGCCAGGTCATATGACACACACTCCCTGGCGCCCTCTGACACCACTCTGCCAGTCCAATCTGTCCAACCACAGTCACCGCTGTAGCATACGTCTGACCTCAGAACACCTCCCCATCACAACCTGCCTTCTGCTGTTGTCTTAAAAGATGCcacttgttattgtttttgtttgttcaCTAGGACCTATGAGCTGCATGCTGCAGGGGGTTCTTTTGTTTCTGCTACATCACTAGCTCCCCCTGGAATGAGCCGAGGTAACACAACTTAGTTGGGGTGTTGATGTAAACATAAATATGGATGTTGGTTTGATTTTAGATCAACTATATTTTGGGGTACAAAATACCAAACTTTTAACAGTGGGTAAGTAGTAGCACGTGATAGTTAAAGGGTAAGCACTTAAATTTGATTATTCGTCTACTGTCTACTATGTAAAGGGTATgttaggagaggtagaggaggacaggacagagatgCCATACAGCTGGGAGAGataggaggacaggacagagatgCCATACAGCTGGGAGAGataggaggacaggacagagataccatacagctgggagagataggaggacaggacagagataccatacagctgggagagataggaggacaggacagagataccATACAGCTGGGAGAGATAGGAGGACAGGACAAAGATACCAGTCACCATACAgctgggagagatgggaggacagGACAAAGATACCAGTCACCATACAGCTGGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131753 lncRNA downstream 2152 13246961 ~ 13248154 (-) True LOC118937744
TU131750 lncRNA downstream 8472 13238974 ~ 13241834 (-) True G114780
TU131733 lncRNA downstream 44599 13205490 ~ 13205707 (-) True G114763
TU131732 lncRNA downstream 45749 13204145 ~ 13204557 (-) True G114762
TU131729 lncRNA downstream 49258 13200820 ~ 13201048 (-) True G114759
TU131792 lncRNA upstream 4855 13329535 ~ 13330477 (-) True G114814
TU131798 lncRNA upstream 15034 13339714 ~ 13343791 (-) False LOC110507671
TU131799 lncRNA upstream 15034 13339714 ~ 13343791 (-) True LOC110507671
TU131781 lncRNA upstream 61489 13386169 ~ 13390936 (-) False LOC118937745
TU131780 lncRNA upstream 81359 13406039 ~ 13408902 (-) True LOC118937745
XR_005035136.1 mRNA downstream 62 13246956 ~ 13250244 (-) False LOC118937744
XM_021587671.2 mRNA downstream 61294 13176165 ~ 13189012 (-) True abhd5a
XM_021587639.2 mRNA downstream 61337 13176165 ~ 13188969 (-) False abhd5a
XM_021587657.2 mRNA downstream 61383 13176165 ~ 13188923 (-) False abhd5a
XM_036938337.1 mRNA downstream 61955 13176165 ~ 13188351 (-) False abhd5a
XR_005035137.1 mRNA upstream 14885 13339565 ~ 13353635 (-) False LOC110507671
XM_036938437.1 mRNA upstream 81202 13405882 ~ 13453664 (-) False LOC118937745
XM_036938506.1 mRNA upstream 171919 13496599 ~ 13500298 (-) False LOC110534058
XR_005035141.1 mRNA upstream 288945 13613625 ~ 13614107 (-) True LOC118937746
XM_036938552.1 mRNA upstream 326126 13650806 ~ 13661629 (-) False LOC118937748
TU131498 other downstream 156541 13092092 ~ 13093765 (-) True LOC110507534
TU131319 other downstream 511149 12735314 ~ 12739157 (-) True G114442
TU131298 other downstream 540991 12707827 ~ 12709315 (-) True G114424
TU131258 other downstream 636626 12610669 ~ 12613680 (-) True G114402
TU131242 other downstream 665166 12584027 ~ 12585140 (-) True G114390
TU131788 other upstream 6068 13330748 ~ 13332309 (-) False G114812
TU131789 other upstream 6068 13330748 ~ 13332506 (-) False G114812
TU131790 other upstream 6068 13330748 ~ 13332506 (-) True G114812
TU131917 other upstream 169768 13494448 ~ 13500283 (-) True LOC110534058
TU131946 other upstream 249855 13574535 ~ 13582606 (-) True G114928

Expression Profile