RNA id: XM_036938394.1


Basic Information

Item Value
RNA id XM_036938394.1
length 2646
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110507612
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13324937 ~ 13330676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGGCTGTCCTGAGTTGagaataactttttttttaatggtgTGCAGGTGTATCTTTGGTGTGGACAGTCAAGAGGGGGAGGCTAACCAATTTTTTTTTGCTAgcatcttccccagtgctgttcTTTAAAGTGAGTAAGACTAACGTTAGCGTGGTCAACTTGATTAAAAGCAAGTTAGTAGGTTTATCTAGTTTGAGGTTTTGCTACCATCTCACATGGCAGCAAATTAGCAAAAGTTTACCGACCAAGCCAGCATGTCAAACGAATGAACAGCTAGTTAGTAGCTACTAACGTTGTTTGAAACTTATGTTACACGGTAGTTTCCGATCTTAACATTAGGTCATTCTTAGATTGTCACTATAACTACCAACTAAAGTTATGCTTTTGTTCCATTGCAATATATCGGTCTCCCTATTGAGTGTCTCCACAGGAATGTTTCAGCAAACAGACGCAATGACTTCACCAACAGAGAAAATCGTGCTGAAAAGCACCTCAACAGTTTCCCTCAACGATCGCTTCACGACCATGCTGAACAACAAGCAGCTGGAGCCAGTGGCTGTACGAGTCAACATGCAGCAGCAGCAAGTGGCCAGTGTCCGCAACAGGATATTGGCTCTGCAGATGGAGAACAGGACCTCTGTGCAGGCTGCCCTGCAGCCCAAGAGCCTGAAGCAGCGCCTGGGGAAGGGCGATGTCCTGGCAAGGCTAGGTCGGCCCATGGGGACCCTGATGCGGGGGGCCACCAGAAGCCAAGGGTTTGCTGTACGGGGACTGCGAGGAATGCATCGAGGAGGTTTCGGAGTGTGTGGAAACAACAGAAGGGGCTTTTTTAGAGGTGGCTATGCTTTCAGAGGTGTGAATCAGATGCGTGCCCGGGGAGGGGTGACTAAGCTTAGGTTTCGTCAGGGCTTGAGGTTGCAAGGTGGCCAGCTGAACGATGCTGGAGTGCTGGTTAGCTGCGGAGCCAGGAATGAACTGGGCCTGAGAGGAAGAGGCAGAGGAGCTGGTCTGGGCTTGCGGGGCCGGGGATGGTTCCGAGGCATGGGCAAACCTGAAAAAATCCCCACCAAAGAGGAGCTGGACAACCAACTAGACAACTACATGTCAATGACCAAGAGCCACCTAGACGCAGAGCTGGATTCCTACATGGCCATGGCAGGCTCCGACTACATGGAGTAGAACCCTGCTGGAAGACGGTGTCCATGATGCTATTTCAGGAGAGGAATACTCTACTACAGGTAGACCCTAGCTAGTTAAATAACACTTAAATACAGATCGGGTAGCTGTAGACCCTAAAATTGAAGTTTCTAGCTATTGTAATCTCTTTATTTTGTAGCGATAAGCACAACATCCCTTCATTGCTGGCAAGAGGATGAGTTTTCGATTTTGACAGAGTGTGCAAGGTGCAACCCCTTTCAGATGAAATCATGGGCACCTTGCGCCAGAACTGGATTCATAGAAAAGATCAACTGTGCAAAAACCAACAAAGTTGAATACAAGAGCTGCCGTTCCTCTTGGATGGATGAGCGCCTATTCTGGAGGTTTGAGGGGATCATGATGTGCCTGACGGTAGTCTTGGTCCTGGTGGTTATAGCTCGTCAGAGAACCCTGGACCACCTGGCTTCTGAAAAGGTCCGCAGGCAGATCCTGTCCATATAGAGACTGGGTGCTGTTGTCCGGCGCTTGACCAATCAAATGTTTGAAGGACTTGAATGGCAAAACTTGCACATTGGTATCACTATTTCCATTTTGATCCCATGTTTTGTTGTGGCCTTATTTGTGAAATGTCTATGTGTAAGTATGACCCATACACTGCACAATAGTTATTGGTTTGAACAAATCTTACAATATGTTCCAAGTCATTACTGCACTATAGTTAATAATATTGCAGCACAGCATGTctttatgttgtcatagttgatATTTTTTCTGTGTCTGTGATTAGAGTATAGTCCTGCCTAACTATTCTATGTGTCAGTTTTGGGGATTTGAACATGTCAACTTGGTCTCACTTCCTGACATTGTCTCACATTGTCTGCATTGTCACCATAATAACGGAGTTGGTCCAGCCAGAGAGACAAATAATACAAATATCTAGGCCTATGTGTTATTTTTGAATATACTATTTTCCTTTAAAGATTGATTTCTGAAAAATGGGTATTACCAGTTACATTTAATGCGCTACGATAGATTACATTTTTTGGTCTGTGATCAATGTGCTTACGGTGTATTTACCAATGATTGGTCAATCACGTTTGTGTGAAATTCAGGTCTGTCTAAACTATACATATCTATTTATTTATGGTGTCGTTTGACAAGCGTTTCCTTTTGGTTACACACTagcttaataaagagcagtgacactatcaagagcagtgtgctgGTTTCTTCATTTTTCTGATCTTATTCATCTGTTACCAGGCACCTGCaacaaagatagctcagatgtgtgAGTGCCTTTTCGATTTTGGTTACACACTATTTGTAAAACCATGTTTCCTCTGATTTCTTACAGTATTTGTGTATTTTACAGAACTGTTAACACTATTCCTAATTAGTACATTGCTGTAAGTGTGTAGCAAATTGTACAGTTTATTGCACTTTCTATTTATGACCAATAAAAATAAACTGTTAGGGTATGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131599 lncRNA upstream 20328 13303047 ~ 13304633 (+) True G114656
TU131598 lncRNA upstream 57399 13267344 ~ 13267562 (+) True G114655
TU131596 lncRNA upstream 58591 13266158 ~ 13266370 (+) True G114653
TU131595 lncRNA upstream 59354 13265328 ~ 13265607 (+) True G114652
TU131591 lncRNA upstream 65316 13259358 ~ 13259645 (+) True G114648
TU131642 lncRNA downstream 82 13330758 ~ 13332229 (+) False G114687
TU131643 lncRNA downstream 82 13330758 ~ 13332453 (+) False G114687
TU131644 lncRNA downstream 703 13331379 ~ 13332453 (+) True G114687
TU131652 lncRNA downstream 8288 13338964 ~ 13340292 (+) False G114689
TU131650 lncRNA downstream 8885 13339561 ~ 13340292 (+) False G114689
XM_036938340.1 mRNA upstream 83106 13193145 ~ 13241855 (+) False LOC118936508
XM_036938345.1 mRNA upstream 83106 13193148 ~ 13241855 (+) True LOC118936508
XM_036938285.1 mRNA upstream 263655 13046879 ~ 13061306 (+) False LOC110507515
XM_021587748.2 mRNA downstream 52512 13383188 ~ 13387921 (+) True LOC110507631
XM_036938495.1 mRNA downstream 243821 13574497 ~ 13582605 (+) True LOC110517609
XM_036938484.1 mRNA downstream 253448 13584124 ~ 13601598 (+) False LOC110507693
XM_036938477.1 mRNA downstream 253459 13584135 ~ 13604148 (+) True LOC110507693
XM_036938470.1 mRNA downstream 273628 13604304 ~ 13623972 (+) False LOC110520769
TU131145 other upstream 360031 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 562134 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 603646 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 604268 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1615184 11708603 ~ 11709777 (+) True G113396
TU131856 other downstream 291301 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 370934 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 630585 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 811206 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 903838 14234514 ~ 14236854 (+) True G115189

Expression Profile