RNA id: XM_021587748.2


Basic Information

Item Value
RNA id XM_021587748.2
length 2550
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110507631
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13383188 ~ 13387921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTCATGTTGACGAAGGCGTGTCTTAGAAAGGGGGCTGGGTGCGAGGTAACATGGTGGTTTGGTTATCGCCTATCAGCCATAGACAGAAGAAGGTTGGAGTGACTGAACGCTTGAGTGGTCggctttttattttcatttttcctTTGATTTTGTGCTTTCGTTTgtcttcaaaatggagatggagaAGAGGATCAGTTTGGAGTTGAGGAACAAGACCCCAGCCGAGGTGGCTGAGCTGGTGGTGGACAACTGTCGGTCCAGTGATGGAGAGGTGGAAGGGCTGTCAGATGACTACAAGGAGCTGGAGTTCCTCAGCATGGTCAACGTGGGGCTCACCTCCCTGGCTAAGCTGCCCTCCCTGCCAAAACTGCTCAAGCTGGAGATCAGTGATAACATGATCGTTGGAGGTCTGGACCAGCTGTCTGAGAAGTGTCCCAACCTGACGTATCTCAACCTGAGCGGCAACAAGATCAAGGAGCTCAGCACTGTGAAGCCTCTGAAAAACCTGAAGAACCTGAAGAGTCTGGACCTGTACAGCTGTGAGATCACCACTCTGGAGGACTACAGGGAGAGTGTCTTTGAGCTGCTGCCCCAGGTCACCTTCCTGGACGGCTATGACCACGAAGACAACGAGGTGCCAGACTCCGAGGCTGACGATGATGACAACGAGGGGCTAGACTCAGAGGCTGATGATGATGACGAGCACACAGCTGGCCCCACCAGAGATGgggatgacgatgatgatgaggatgatgagggtTCCGAAGGCGAAGAGGTGGGACTGTCCTACCTGATGAAGGATGGCATTCAGGATGAGGAAGATGATGATGACTAtgttgaagaggaggaggaagaggatggagtAGGAGTCcagggagagaaaaggaagagGGATGCAGAGGATGAGGGAGATGACAGCGATGGAGATGACGATTAGCCCCTCCTGTAACCGAGCATGGGATCACAACTAGGCTAGAACAACAGGAACAGGAAATAGtttgtgaatttttttttttgtataccatagatattactgtagaatctaaatgtttttaatttgttttGTAAATGTTCCATATAAAAAGAAAAGCGGGTTAGAATTATAAAATGGAATGTGGTTTTGAAACATGACATGTGGGGAGGGGCTATAGCATTCAGACAAGGTGATGTTTAACTCTGGTGAGAAGTTGTAGCGGCCCATTTCAAGTCCATCTGGTTGTGATTGTCTCCTATGCCATGTTCTCCCAAGACTTTAGTTGTCAAGCGAAAAGCTCCATGTGCTGTCTGGTTGGCTCATAGTAAGGTTTAtatgggaggagctataggaggacaggctcattgttcTGGCTTAAaatgtaacatttatttaactaggcaagtcagttaagaacaaatatttatttacaatgacggccaacccctaacccggacaatgctgggccaattgtgcgccaccctacgggactcccaatcgtagccggttgtgatacagcctggaattgaaccacgGTCTGTAGTTACGACTctagcactgatatgcagtgccttagacctctgtgccACTCGGGTATCAACCACATCAAACATACGGAAACCACACGTTTGACTCggttccatttcagccattacaatcctcctgtagctcctcccaccagcctccactggtttacAGGTGGCCAACGAGTACTGTTTAACAGTGACCCGGGCAAAAAATAACCTTAGTGAGTCGTTAGCCCCTCCTATCTGTTCACCTACACTATATGTACCCGCTGTATTGTAGGGATTGCTGACTGTTTCCTAAGTACTTTGTTTAGGACCTGGGATTTGATACCTTTAAAGTTTGTCTGATCACGGTGTCATCAATTCACTTCTAATTCCACAAACAGCCGATTtgtaagttttttttaaattgttttttttttatgtattgtgCTAGGGCTGCAGATGACTCTGGGTGATGTAGTTTTCACATCTCTGGGTAATGTAGTTTTCAGGTCTCTTAATCTAGCTCTGATCGTCATCAAAGAAGCCCTAGAGGTGGGTTTAAAGAGCTAATTCGTATTCAGGCTACACGGAGGTAATTTTGGACCAGTTTAGTCACATTCTAAAGCTCAGGTGGACCCAATCTCTCAGAAGGACCTGGTGATAAGCAGGAACACAGTTAATGGTCTCTTCTGTCCTGAATCCAACTTGGTACCCTGGACTTCTGTCATATCccaatgaaagaaaaaaaaaatctgtctcctttttgtttgtttgcagtTTTATGGTTTTACTGTGCAAGGATTTTAAACTTGTATGACTATGTAAATAGACCTTTTATCTTTTCTGTGTAGTATTtgcttgtttttttgtgttttttttaacatgCAATATCtgtcctttttttatttttaataaacacAAAGCACATGTCAGGATGTAAAGCTTCAGACCCCGACGCTCAACATTGGTTTATTTTTTTGGCCTCAGCTGTTGAGAAAGTCATGTTTTGGAATTTATGTTAATTAATCTTCTGAAgtgtttttaaataaaaaaattaattcTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131651 lncRNA upstream 39005 13339715 ~ 13344183 (+) False G114689
TU131652 lncRNA upstream 42896 13338964 ~ 13340292 (+) False G114689
TU131650 lncRNA upstream 42896 13339561 ~ 13340292 (+) False G114689
TU131649 lncRNA upstream 42896 13339758 ~ 13340292 (+) True G114689
TU131643 lncRNA upstream 50735 13330758 ~ 13332453 (+) False G114687
TU131675 lncRNA downstream 41780 13429701 ~ 13431706 (+) True G114712
TU131680 lncRNA downstream 53933 13441854 ~ 13473747 (+) True G114717
TU131887 lncRNA downstream 295775 13683696 ~ 13684785 (+) True G114897
TU131898 lncRNA downstream 330311 13718232 ~ 13718727 (+) True G114904
TU132023 lncRNA downstream 346807 13734728 ~ 13734956 (+) True G114990
XM_036938394.1 mRNA upstream 52512 13324961 ~ 13330676 (+) False LOC110507612
XM_036938399.1 mRNA upstream 53494 13324963 ~ 13329694 (+) False LOC110507612
XM_036938404.1 mRNA upstream 53517 13324962 ~ 13329671 (+) False LOC110507612
XM_036938407.1 mRNA upstream 53758 13324937 ~ 13329430 (+) False LOC110507612
XM_036938410.1 mRNA upstream 53758 13324957 ~ 13329430 (+) False LOC110507612
XM_036938495.1 mRNA downstream 186576 13574497 ~ 13582605 (+) True LOC110517609
XM_036938484.1 mRNA downstream 196203 13584124 ~ 13601598 (+) False LOC110507693
XM_036938477.1 mRNA downstream 196214 13584135 ~ 13604148 (+) True LOC110507693
XM_036938470.1 mRNA downstream 216383 13604304 ~ 13623972 (+) False LOC110520769
XM_036938524.1 mRNA downstream 236712 13624633 ~ 13630579 (+) False LOC110513073
TU131145 other upstream 418258 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 620361 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 661873 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 662495 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1673411 11708603 ~ 11709777 (+) True G113396
TU131856 other downstream 234056 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 313689 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 573340 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 753961 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 846593 14234514 ~ 14236854 (+) True G115189

Expression Profile