RNA id: XM_036938437.1


Basic Information

Item Value
RNA id XM_036938437.1
length 5488
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC118937745
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13304688 ~ 13453664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACTCCGTAGCCCTGCAGCTTGGGGTTTAGAGAGATTGAGCCATCGAGTTACAGAGCGGGGGAGAAGGCTATCCAGTCTCCCAGCTGCATGCTCTCTAATAACCAAAGCCtcggtgaagagaggagagggagagggagggggactcAATAGGGAGGCAATGAAACGGACTCATCCGCGTAACTAGACACTACCAGTCCAGTTCAGTGTTCAGAGCATGCGAGAGCGTAGCTAGACCAACCGCATTCAGTTATATCTAcaaaggaatagagagggagaaaatagaaGTGTTCCAGCCTAGGGAGGCGGCGAGGAAAGGAGCAAGACATAGGCTACTGGCGGCTTTCGAGCGTCACAGGCATATACACCCCGTGTCCAGAATTTACGGCCATTCTTGGCATCAGCCTGTTGTACAAAATTGCGGATTTATAACTGAGTGAATTCGGGGATAGTCATCGACAGTCCTATCCTTCACAATGAAGAAAAACAATTCAGCTAAACGGGGCCCGCAGGACACAAACCAGCACAACACGCAGCCAGACAAAATCGGTTGGATTCGCAAGTTCTGTGGCAAAGGGATATTTAGGGAGATCTGGAAAAATCGTTTTGTAATACTCAAAGGGGACCAACTTTACATCTCAGAGAAAGAGGTGAAGGATGAGAAGAAGATCCAGGAGGTGGTTGACCTGACGGATTACGAGCGTTCTGAGGAGCTCCGCAAGGCCAAGAGCCGCAGCAAGAAGAACCACAGCAAGTTCACCCTGCTGCGCTCCAGAACCCCAGGCAACACGGTCCCTAACCTGGTGTTCCTGGCTGTTAGTCCAGAGGAGAAGGAGTCCTGGATAAACGCCTTAAATGGAGCAATCACCAGATCCAAGAACAGCATCCTGGATGAGGTCATGGTTGAGGATGAAAACCTTCTGTCCCATCTCACACGGGACAGGGCTAAGATCCCTCACACACGGCGCCTGCCTACACGAGGACACATCATGGCTGTGGCCTCCACTTCTACCTCTGACGGCATGTTGACCCTTGACCTGATCCAGGAGGAGGACAGCCCCAGCACAGACGGCCAGGACACCTGTGACAAGAGCTTCCGGGCCAACCTGGACAAATCCACTCAGCTCGACTGCCTCAGGTCCAAAACAGAGGGTGCCATCAGTAGCATCTGTCTAACACCTCCCACAGAGGTCACTGGGAAGTCCCAGAGCCTGCCGCGCGATACCGGGGTCACCTGGGACGATAAACAGCAACTTCAGATGGGGAAGTCCTGCACTCCTCAGCCAGGCAAGAGGCTCACACCGGCCGAGAAAAGCCGCTGCGCCTCCATGGACGAGATCCTCTCACACTCCGGGACACAGGCCACCAAACCCAGGACATCCATCCCCCGCTCTGCCACCTCTGCCCCCCCGGGCAACCTGCCGCCCATCAGCCAGCTGCAGGACCTAATCGCTCAGAAGCTGGAGAGAACTCAGGAGCTGCTGATGCAGGTGCAGGGGGcgaagggggaggaggtggagcgggggaaggggaaagggaagGACTCGCCAGGTTCCAAGGGCTCCAAGGGTTCCTCGGACGGGGCCCGGGCGGAGGCAGAGAGGCTGCTGAAGGAGGCAGCGTCCACATGGGGTCAGGCCAAGGATGTTCTAGAGGAGGTGAAGGAGCTGAGGGCGCTCTACCGTCAGCTGGACTCACTGCCCAccacccctgcctccctctcacccctcacACCCTCCAACAGCGGCAAGCAGACTGACTACAGGAAGAGCATGATGTGACCGTCAGAGAACTCAACACAGACTGGACTATGAATCCCTGAGCAAAAAAACAACTCAACATGCAAAGCCACAATATTGTTAAATatgtctgtttctctccttctgCGTTCTTTCACTTTATTGATGCTGTGACAAAGTGAGGACATTCAGTTGCCCAACGACGTCCCCTGTGCTTGACCACTGTGCCCTTACATGTCTGCTTGGTGAAGGGTGTGGGGGGCAAAGGGAAGGGGCCGATCTAGGGACTCAGGTACATGTTGGCCAGGGAGTCTCTCTGTATTGACCTGCTGATGAAAGACCTTGTGATGCTGCAGTGTCGGGGGTTGTTTTCCTCCGCGTTGGTTGTCAAAGAGGGGATGTTGCAAGGTTTGGGCGGGGAATCAGAAGGGCTCTGCTCTCCAGGGACAGACACACAGTGGTTGAGGATGACTCAGATTACAGGAAGGGAAACATGGTGTCCAGACCAGCCCGTATGTTGGGAATGTCAATGTTTTCCTTTTTCTGTTACACAACACACTGGAAGGTTCCCAACGAACACCACTCTAAAAACCAACAGCAGCCCACTGTACAGTGCagcattctccctccctccctccgtctgctGCTCTGGGAATGGAGCTCAGTGGACTCCTCATCTCTGCTGGTCCATTATGATTCACAGGGACAAGGGGAACCAGTTCACATAGTCAGAACTCACTGGCGTTCCATAGGGTGTTTCTGTCTGTTCCATGAGCCATATGATACAGTCAAAATGGAGGACGTCTGTCTGGGTTGTCTTGTTACTAGATGGTACATACTAGGACAGGGCTGTTCCTTTCCTGTAGGCCTACAGCCAGTTGTCTTCAGCCAGTTGCCACTGCAGCCATTGATTCTCATGCTGCTGTAGAGCCATGGAGCCGGGAtggcgtctgtgtgtgtctggtgtgagtGGTGATGATCATGCTACTGTAGAGCCATGGAGCCGGGAtggcgtctgtgtgtgtctggtgtgagtGGTGATGATCATGCTACTGTAGAGCCATGGAGCCGGGATGGcgtatgtgtgtgtctggtgtgagtGGTGATTATCATGCTACTGTAGAGCCATGGAGCCGGGAtggcgtctgtgtgtgtctggtgtgagtGGTGATTATCATGCTACTGTAGAGCCATGGAGCCGGGAtggcgtctgtgtgtgtctagtgtgagGGGTGATTATCATGCTACTGTAGAGCCATGGAGCCGGGATgacgtctgtgtgtgtctggtgtgagtGGTGATTATCATGCTACTGTAGCGCCATGGAGCCGGGAtggcgtctgtgtgtgtctggtgtgagtGGTGATTATCATGCTACTGTAGAGCCATGGAGCCGGGAtggcgtctgtgtgtgtctggtatgAGTGGGAGGCATGACATAGAGGTCAGATGCAGTACTGAGGAGAGGAACCACTTGTAAGTGATTTGCTAAAATCGTAATAATAACAGAATTGCACTATGAAGGAAGGCTGTAAAACAAGAGGATGAAACTGGTGGGTGGAAACTGGAGAGAACAGATGTGTCTAATATGGCTTTTCATTCTGTTCTACATATTTGTTACGACAATCTAGTGTGTCTAGAAACATACAGGCTGCATAGTTCCAACGCCTTGATACCTAAGACAGTCGCTCAACTCGCTACTCTTTGAAAATCTGAGCTTCTCAAAGGTACAATGTGTGTAAACAATGCTGTTGATGAACGCATCCCTCCGGCTAGCTAACAGTGATGCTAAcgcttgacctctgacctccctGGCCTACTTAAGGACTTATAGGGTTTATGGCAGAGAAGAGAGCTATGCAACATAGCAcgaacacacacaaccacaatgagagagagagagagagagagagagagagagagagcggccaATGGACTGCGTCGCCCGATCAAAACATCCAGTGCGTCTCTCCAGAGCACCCCGCCTTGTTTTATAGTCAGTAGCTACATATGTTATGTGTTTGCACAGTGCTGTGGAAATGGTTCGCTCTGGACTGTCAGACAGACAACAAAAACAGTGTTATGATTATGTTGTTATCATTGtttgtgttttttatttgtttaaaatgCTTTTGTAGGATGATTTAAGGCACGCTTTAGAGAAGAAAATGGCTGTGGCATTCTAGAACGTTCAGGCTCTTAGAATGCTCAACTGGAAACTCTGCATATTGTAGTGTTACTCTGTTTGTTCAACCAACAACCACAACCCAATAACAGAAGTCAAAAATCATAAACGTTGAAGTTGGATATGGACATAAAAGAGGGTGAGGTGAGAAAGGTATGTTAGAAAGAACACAACAGGAAACATTTAACTGAGTAGGCCATAAACAATATTTTTACTAGTACGtctattattgttgttgttatttcgTTTTATCTGGGATGGAGTACTATCTTGTGTGAGGCTGAACACAAAACCTAACGTTTGTGCAATCCTGAAAAGATTGATATGACCGCCGATGCACTGTACATACTCTGAGCAGTTTGAATCATCCCAAAGGATGTTGCTGTATTTTCTTATTGCGTTGCATTATGATGGAGTCGGAAGTGGCTTTGCTCTGAAGTTCATCTCTTCTGGACTGTCAAAGTACTTGAGACATAACCACTTGTGCAATTATAACAATCAGCCTAATTCAGACAACCAGTGTTCTACATTGAATGTTTGCTTTTTTAAGTCAAAACCTAGCCGAGAATTGTAATAAAAAGATTTTTGTATGTCCATTCAGAAGAATACCCTACTGGAATATAGGGCTGGTTTTCATAGGAAATGCTGAGGTAGGAAGTGATTGATCCAAGCGTTGTTTTTATGGCAGCAATAATACCATCTTCAAGCTATGCCAAAGATAATATGGCTGTACAAGGAAATAAAACTATTCCCATTGAAATACTTTGATAATGTAAATAAGGATGTTTCATATTTTCTAGTTGACAATGTGAATGTCAGCCTACTTGTTCTGACAACCATACCACATGCTTGGTCACACCAACTCCAACCTTAATAATCCATCAAACACCAAGTCAATTTACCCTCTTCTACAGCTGGCAATGCATTCTgggatataataataatataatatatgccatttggcAGACCCCTTTATCAAAAGCAAtttacagtcatgcatgcatcCATTTTATGTATGGGTGGCCCCTGGATTCGAACCCTCAGGTATGGCagtacaagcaccatgctctaccacctgagccatacaggaccagGATACAGGATCTGTGGCCACAAGTTGTGAAATCCAGCCAATGTTGGCCACACATGGTCACACACAAACGCAAAACATTCAATCATGACTGTTTTCTTATTTCTGTAAGGTGAAATGTCTTCCTTCGTTTTATGTATGACATGTTATGTTGTCATATTTTCAGTTTCCTTTCCAATTCTGTTCACCAAATGTGGGTCTGTCACCAAAACAGTAGCTACCGCAGCCTTAAATACCAAGAGGAATGTAGGAAAGTTACTCAGCAACTACAATGATTGTCCCCCAGCTATTTACAAAATCCTAATTCTTGTGCATTATGGATGAGATAAAGATTGTACCATAGGAATACAATAGCAGAGTACGAGCTAGGTGGATTACTAGATGGGAATGGAGAAGGCATTGTACACAGACTCAGAGGTTGAAATCCTGCTCCCTCAGGGTTCCATTTTAATAAATTGTGCTAAACAAAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131783 lncRNA downstream 14946 13304688 ~ 13390936 (-) False LOC118937745
TU131781 lncRNA downstream 14946 13386169 ~ 13390936 (-) False LOC118937745
TU131798 lncRNA downstream 62091 13339714 ~ 13343791 (-) False LOC110507671
TU131799 lncRNA downstream 62091 13339714 ~ 13343791 (-) True LOC110507671
TU131792 lncRNA downstream 75405 13329535 ~ 13330477 (-) True G114814
TU131851 lncRNA upstream 26852 13480516 ~ 13480903 (-) True G114865
TU131853 lncRNA upstream 40146 13493810 ~ 13494259 (-) True G114867
TU131918 lncRNA upstream 50970 13504634 ~ 13512209 (-) True G114911
TU131919 lncRNA upstream 51346 13505010 ~ 13558642 (-) False G114912
TU131920 lncRNA upstream 51346 13505010 ~ 13531390 (-) True G114912
XR_005035137.1 mRNA downstream 52247 13339565 ~ 13353635 (-) False LOC110507671
XM_036938366.1 mRNA downstream 81202 13250306 ~ 13324680 (-) False LOC110513400
XM_036938358.1 mRNA downstream 82331 13250306 ~ 13323551 (-) False LOC110513400
XM_036938352.1 mRNA downstream 82339 13250306 ~ 13323543 (-) False LOC110513400
XR_005035134.1 mRNA downstream 86729 13316759 ~ 13319153 (-) True LOC118937736
XM_036938506.1 mRNA upstream 42935 13496599 ~ 13500298 (-) False LOC110534058
XR_005035141.1 mRNA upstream 159961 13613625 ~ 13614107 (-) True LOC118937746
XM_036938552.1 mRNA upstream 197142 13650806 ~ 13661629 (-) False LOC118937748
XM_036938559.1 mRNA upstream 197142 13650806 ~ 13661631 (-) False LOC118937748
XM_036962010.1 mRNA upstream 374615 13828279 ~ 13914373 (-) False LOC110535394
TU131789 other downstream 73376 13330748 ~ 13332506 (-) False G114812
TU131790 other downstream 73376 13330748 ~ 13332506 (-) True G114812
TU131788 other downstream 73573 13330748 ~ 13332309 (-) False G114812
TU131755 other downstream 82559 13295833 ~ 13323323 (-) True LOC110513400
TU131498 other downstream 312117 13092092 ~ 13093765 (-) True LOC110507534
TU131917 other upstream 40784 13494448 ~ 13500283 (-) True LOC110534058
TU131946 other upstream 120871 13574535 ~ 13582606 (-) True G114928
TU131953 other upstream 200238 13653902 ~ 13661591 (-) True LOC118937748
TU132581 other upstream 508521 13962185 ~ 13976561 (-) True G115431
TU132617 other upstream 603878 14057542 ~ 14060958 (-) True LOC110535427

Expression Profile