RNA id: XM_036938506.1


Basic Information

Item Value
RNA id XM_036938506.1
length 1806
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC110534058
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13494448 ~ 13500298 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataacactttgtatttcgACACCACTGCTGCTCTCGTATTGCCCATGATACATTCGAGAATACGATTGTAATCTCTTCGTAATCTGAAGACAGACGCGAAATCCCTCTATTTAAATTGCTTTAAAACTATTAATAGCCTCGCTCTCAGATGAGAGCATCATAGCCGACAAAACATCGCAATATTCCTCGATTAGAACGAGGTGACTCCCAAGGCGAACGGTATTCGGTCCGTCCACCTATGGTCTGGCAGGTTTTTGACCAAGGCTACGGATAAAATGTGGGATGAAGTTGCTCGGTCTGCGCCGGTTAAGTATGGCGCTGTCATAGCGGTCACAGTTATCTGCGTTGTTCTGTTGAGAAAATGGATTGCTGGGGGTGTGTGTCAATCTTCAGTCCAATTACATGGCAAGACGGTGTTGGTCACCGGTGCCAACACCGGCATTGGCAAGGAAACGTGCCATAACATGGCACGTAGAGGGGCGCGGGTGGTGATGGCATGCCGGGACCTGACACGGGCTGCGAGGGCGGCGGATGAGATTCGTCAGGCCACGGGGAACAGCAACATCGTAGTGCGGCACCTGGACCTGGCCTCTATGTACTCTGTCAGAGAGTTGGCCAAAGAGTTCATTGCCAGTGAGGATCGCCTAGATATACTCATCAACAACGCTGGTGTGATGATGTGCCCTAAGTGGCTAACAGAGGACGGCTTCGAGACACAACTGGCTGTCAATCACCTCGGACACTTTCTACTGACCAATCTCCTTCTGGGGAAGCTCAAGAGCTCCGCCCCTAGCCGTGTGGTCAATGTGTCTAGCATTGCACACAAAGGGGGTAAGATCCAGTTTGATGATCTTTTCTTTGCCAAGAGGCCGTACAACTCCCTGGTCAGTTACAGGCAGAGCAAGCTGGCCAACGTGCTATTCTCCAGAGAGCTGGCCAGAAGGTTGAAAGGTACGGGGGTGACGTCCTACAGCCTGCATCCCGGGGTGATCAGGACAGAGCTGACTCGTCACGTGGAGACCTGGTTCCCCATGCTGAGGGCCATCCTGTCAGCCCCCTCCGTGCTCCTCATGAAGACCCCCACCCAGGGTGCCCAGACCTCCATCTACTGTGCTGTCACCCCAGGACTGGAGAACAAGTCTGGCAGCTACTTCAGtGACTGTGCCATGACGGAGACCGCCCCAGGGGGGAGGGATGATGCGGTGGCCAAGAGGCTTTGGAAGGAGAGTGCCCGTCTGGTGGGTTACAAAGAAAAAGACTGAACAACCCCCTCCATCTGAAAACCATAGAGAAAGACTGTACAACCCCCTCCATCTGAAAACTATAGAGAAAGACTGAACAACCCCCTCCATCTGAAAACCATAGAAAACGACTGAACAACCCCCTCCATCTGAAAACCATAGAGAAAGACTGTACAACCCCCTCCACCTTCAAACTATAGAGAAGGACTGGACAACCCCCTCCACCTTCAAACTATAGGGAAAGACTGTACAACCCCCTCCACCTGAAAACCATAGAGAAAGACTGTACAACCCCCGCCATCTGAAAACTATAGTGAAAAACCGAACAATCCCCTCCACCTGAAAACCATAGAGAAAAACTGAACCCCCTCCATCTGAAAACTATAGAGAAAGACTGTACAACCCCCTCCATCTGAAAACCACACAGAAAGACTGAACAACCCCCTCCACCTGCAAACTATAGAGAAAGACTGAGCAACCCCCTCCACTTGCAAACTATAGAGAAAGACTGTACAACCCCCTCCACCTTCAAACCATAGAGAAAGACTGTACAACCCCCTCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131853 lncRNA downstream 2340 13493810 ~ 13494259 (-) True G114867
TU131851 lncRNA downstream 15696 13480516 ~ 13480903 (-) True G114865
TU131780 lncRNA downstream 87697 13406039 ~ 13408902 (-) True LOC118937745
TU131783 lncRNA downstream 105663 13304688 ~ 13390936 (-) False LOC118937745
TU131918 lncRNA upstream 4336 13504634 ~ 13512209 (-) True G114911
TU131919 lncRNA upstream 4712 13505010 ~ 13558642 (-) False G114912
TU131920 lncRNA upstream 4712 13505010 ~ 13531390 (-) True G114912
TU131921 lncRNA upstream 6950 13507248 ~ 13511532 (-) True G114913
TU131924 lncRNA upstream 58986 13559284 ~ 13559498 (-) True G114916
XM_036938437.1 mRNA downstream 42935 13405882 ~ 13453664 (-) False LOC118937745
XR_005035137.1 mRNA downstream 142964 13339565 ~ 13353635 (-) False LOC110507671
XM_036938366.1 mRNA downstream 171919 13250306 ~ 13324680 (-) False LOC110513400
XM_036938358.1 mRNA downstream 173048 13250306 ~ 13323551 (-) False LOC110513400
XR_005035141.1 mRNA upstream 113327 13613625 ~ 13614107 (-) True LOC118937746
XM_036938552.1 mRNA upstream 150508 13650806 ~ 13661629 (-) False LOC118937748
XM_036938559.1 mRNA upstream 150508 13650806 ~ 13661631 (-) False LOC118937748
XM_036962010.1 mRNA upstream 327981 13828279 ~ 13914373 (-) False LOC110535394
XM_036962016.1 mRNA upstream 327981 13828279 ~ 13914376 (-) True LOC110535394
TU131789 other downstream 164093 13330748 ~ 13332506 (-) False G114812
TU131790 other downstream 164093 13330748 ~ 13332506 (-) True G114812
TU131788 other downstream 164290 13330748 ~ 13332309 (-) False G114812
TU131755 other downstream 173276 13295833 ~ 13323323 (-) True LOC110513400
TU131498 other downstream 402834 13092092 ~ 13093765 (-) True LOC110507534
TU131946 other upstream 74237 13574535 ~ 13582606 (-) True G114928
TU131953 other upstream 153604 13653902 ~ 13661591 (-) True LOC118937748
TU132581 other upstream 461887 13962185 ~ 13976561 (-) True G115431
TU132617 other upstream 557244 14057542 ~ 14060958 (-) True LOC110535427
TU132669 other upstream 723561 14223859 ~ 14224919 (-) True G115492

Expression Profile