RNA id: XM_036938495.1


Basic Information

Item Value
RNA id XM_036938495.1
length 1883
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC110517609
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13574497 ~ 13582605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCATAAACACTCCCCTTTTTTCCCCTCAAGTCATTTACCCTACAAAACCTGCCCAACCATTCCTCCACTCTCATATCAGCTGAAATAATTTATAGAAAGCCCGGATCCTTGTGGATACCTTGGACGAATAAAGTCTGCGGGATGGcaactAAATGCACAGGCTGTGGACCTGGCTACAAAAGCCCACTGGATGCCATGAAGGGTCCACGTGAGGAGATTGTGTACCTGCCCTGCATTTATCGCAACACTGGAATCCAAAAACCAGACTACCTTGCCACTGTCGACGTGGACCCCAAGTCTCCTACTTATTGTCAGGTCATCCACAGACTGCCCATGCCCAACCTGAATGACGAGCTACACCACTCTGGTTGGAACGCCTGCAGCAGCTGTTTTGGCGACTCATCCAAGAAGCGCAACCGACTTATCCTGCCCTCGCTCATCTCCTCCCGGGTCTACATAGTGGACACTGGGACAGACCCCCGCGCTCCACAGATGCACAAGATTGTGGAGCCCACAGATATCTTCTGGAAGACGGGCCTGGCCAACCCCCACACCACACACTGCCTGGGCAGTGGCCAGATTATGATCAGCAGCATAGGAGATCCATCTGGCAATGGAAAAGGTGGCTTTATCTTGCTGGATGGTAAAACGTTCGAGGTGGTTGGTAACTGGGAGCTGCCTGGTGAGGCGGCACCTTTTGGTTATGACTTCTGGTACCAGCCCCGACACAACGTCATGATGAGCACCGAATGGGGAGCGCCCAAAGCCCTCGCCTACGGTTTCAGCCTGGAACATGTCAAAGAAGGTCTCTATGGATCGAAGATCCACGTGTGGGACTGGACCACTCACAAGCGGCTACAGTCCCTGGACCTGGGGGAGGAGGGCGCCATTCCTCTGGAGATCCGCTTCCTCCATGATCCCGCCGCCACGGAGGGCTACGTCGGCTGTGCACTCCAAGGAACAGTCTTCCGTTTCTACAGGACACCAAAAGGAGAATGGGCTGCTGAGAAGGTTATCCACGTCCCCAGTAAGAAAGTGGAGGGATGGGCTTTGCCAGTGATgccaaGTCTGATCACAGATATTCTGATCTCCCTGGACGACCGCTTCCTATACTTCAGTAACTGGCTGCATGGAGACATACGACAGTATGACATCACAAACAGGAGGAACCCACGTCTGGCTGGCCAGCTCTTCTTGGGAGGGAGCATCCTAAACGATGGCCCTGTCAAAGTACTGGAGGACCCAGAGAATCAGAGCCAACCACCCCCACGCACAATCAAGGGGAAGAGGATCCCAGGGAGCCCCCAGATGTTGCAGCTCAGTCTGGATGGGAAGAGACTGTAcgtcaccacctctctctacagtggCTGGGACAAGCAGTTCTACCCGGAAATGATCAAGGAGGGTTCTGTTATGATGCAGATTGACGTGAACACAGCCAATGGTGGCCTCAAGGTGAATGAGAACTTCCTGGTCGACTTTGGGAAAGAGCCCAATGGCCCGGCCTTGGCCCACGAGCTACGATACCCTGGGGGAGACTGCACCTCTGACATCTGGCTGTAAAGTTACGCAGGAGGCCCTAGTTTTCCCCCTCTCATTCCCATCATACTTTACATAGACTTCATGTAACTCATATTAGTTGGGAACGGGTGGGGAAGGAGGCATACCCTCGAGCCTCATGCCCGATAATGCTGCCTATTCATTCTCATGCCCGATAATGGTGCCTATTCATTCCATGCTGCTTTGCTTTAAATGCATAATTGTGCCTTAAGTCATTATCTCATCTATGAACCAAATGTTCTTTGTTACTTCCAATGCCAGTGGTGAAACTgaggttttaaaaaaataaacaaattctaACATATGGAATTCATAGAGTAA

Function

GO:

id name namespace
GO:0008430 selenium binding molecular_function

KEGG:

id description
K17285 SELENBP1; methanethiol oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131680 lncRNA upstream 100750 13441854 ~ 13473747 (+) True G114717
TU131675 lncRNA upstream 142791 13429701 ~ 13431706 (+) True G114712
TU131651 lncRNA upstream 230314 13339715 ~ 13344183 (+) False G114689
TU131652 lncRNA upstream 234205 13338964 ~ 13340292 (+) False G114689
TU131650 lncRNA upstream 234205 13339561 ~ 13340292 (+) False G114689
TU131887 lncRNA downstream 101091 13683696 ~ 13684785 (+) True G114897
TU131898 lncRNA downstream 135627 13718232 ~ 13718727 (+) True G114904
TU132023 lncRNA downstream 152123 13734728 ~ 13734956 (+) True G114990
TU132038 lncRNA downstream 172319 13754924 ~ 13756558 (+) True LOC110520780
TU132048 lncRNA downstream 179218 13761823 ~ 13762180 (+) True G115009
XM_021587748.2 mRNA upstream 186576 13383188 ~ 13387921 (+) True LOC110507631
XM_036938394.1 mRNA upstream 243821 13324961 ~ 13330676 (+) False LOC110507612
XM_036938399.1 mRNA upstream 244803 13324963 ~ 13329694 (+) False LOC110507612
XM_036938404.1 mRNA upstream 244826 13324962 ~ 13329671 (+) False LOC110507612
XM_036938407.1 mRNA upstream 245067 13324937 ~ 13329430 (+) False LOC110507612
XM_036938484.1 mRNA downstream 1519 13584124 ~ 13601598 (+) False LOC110507693
XM_036938477.1 mRNA downstream 1530 13584135 ~ 13604148 (+) True LOC110507693
XM_036938470.1 mRNA downstream 21699 13604304 ~ 13623972 (+) False LOC110520769
XM_036938524.1 mRNA downstream 42028 13624633 ~ 13630579 (+) False LOC110513073
XM_036938529.1 mRNA downstream 42961 13625566 ~ 13630579 (+) True LOC110513073
TU131145 other upstream 609567 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 811670 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 853182 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 853804 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1864720 11708603 ~ 11709777 (+) True G113396
TU131856 other downstream 39372 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 119005 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 378656 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 559277 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 651909 14234514 ~ 14236854 (+) True G115189

Expression Profile