RNA id: XM_036938484.1


Basic Information

Item Value
RNA id XM_036938484.1
length 2785
RNA type mRNA
GC content 0.56
exon number 13
gene id LOC110507693
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13584124 ~ 13604148 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTTTCCAGCCATTACCATatgcctgtcctccccaattaaggtgtcaccaacctcctgtcgCCTATGTATAATACACTGGTAGCATAgtgtaccctactctaccctattaCGCACTTTTGGATGTAGCTGAAATTTTACACGTTCTTCATTCAGCAATTTTCCATGTTTTACAACAATAACACTTATTGTGGAGTAGTTTGTCATAATGGACAAATATATTTTACACAGGCACTAAGCAGGCAGCCCTGGTCTGTCACCTCCAATAAGTTGTTCAGAGAACTCGGCACTTTGAGGGACTGAACGCATTCTAAATGGAGCAGAGATATTGGAGATAAAAAAAACTTAAATAGCTAACCATCCAATACAATTTTAAGTGGGAGTGTGGTGAGCGGCCGTGATGGGTGACACGGAGCTGGGTCTGTCTGCTGTACAGCCAGAGGAACTAGAACCGCAGAGCCCCTCcacagcctcctcctctccctcactctctctgccctcctccccttcctctggaTCCTACCACTATCAGCAGACCACCAGTCCCAGCCCCACTCACAGCGATGGTCCAGCCGCCTCCAGCCCACCCCTGGATGTCATCTCAGAGGGCGTGGGCGAGCTGACCCTGGTCATCGATCCCGAGGTGGCCAAGATGGCCTGCCAGGAGGTGCTGCAGAAGGTGAAGTTTCTCAAAGGCGAAAGTGAGGGGTCAGGTCCTGGGTCTGATGGTGGCAATAGCACAGACCAAACACTGGTCAACGGGACTGTACATACAGAGCCTATCAAGCCCCCAAAAATCCCCGGGGAGGAGGACTCTGAGGCACTGCCTCCAGGCTCGGTGAAAAGCGCGCGGCGGCGCCAGCGCCACAACCCCTCCAAGCAGTCGTGGCTGCTGCGGCTGTTTGAGTCCAAACTCTTTGACGTGTCAATGGCCATCTCCTATCTACACAACTCCAAGGAGCCGGGTGTGCAGGCCTACATCGGCAACCGTCTGTTCAGCTTCCGCCACGAGGAGGTGGACTTCTACCTGCCGCAGCTTCTCAACATGTACATCCACATGGACGAGGACGTGGGAGACGCCATCAAGCCCTACGTGGTGCACCGCTGCCGTCAGAGTATCTCCTTCTCGCTGCAGTGCGCCTGGCTGCTGGGCGCCTACTCCTCCGACATGCACATCTCCACACAGCGACACTCGCGCGGCACCAAGCTACGCAAACTCATCTTCTCCGACGAACTCAAACCAGCTGCAGTCCGTGCCCGCCAGCCACTGACGTTGGCCCCTTTCTGCCCACTTCCGACCGCTGCACCATCCCTGCACGGGCACGGCTTGGGCGGAGAGCACGGTCTGTCGCCTACTAAGCGCACGCATCAGCGCTCCAAGTCGGACGCCACGGTCAGCATCAGCCTGAGCAGCAACCTGAAGAGGACAGCGAGCAACCCCAAGGTGGAGAGCAACCAGGACGAGccGGCGCGTCTGGCACCGCAGAGAGAGTTCATCAAGTCCCTGATGGGCATTGGGAAGCGGCTGGCCACGCTGCCCACTAAGGAGCAGAAGACGTCCCGGCTCATCTCGGAGCTTTCGCTGCTCAACCACAAGCTGCCCGCCCGCGTCTGGCTGCCCACCGCCGCCTTCGACCACCACGTGGTGCGCGTCCCTCACACACAGGCTGTGGTGCTCAACTCCAAAGACAAGGCGCCGTACCTCATCTATGTGGAGGTTCTGGAGTGTGAGGACTTTGAGACGTCCAACGTTCCGGTGCGGATCTCCGAGACCAGGATCCGCAGCACGCGCTCAGTGGAGAACCTTCCGGACTGCGGCATCACGGCAGATCAGCGAGCCGGGGGCTTCTCAACGGTTCACAACTACGATGAGGATAACGAAGCCTGGTCTGTGGACGACATCGGGGATCTGCAGGTGGAGCTCCCAGAGTTCCACACCAACAGCTGTGACAACATCTCCCAGTTCTCAGTGGACAGCATCACCAGCCTGGACAGCAAGGAGCCCATCTTCATCGCTGCTGGAGACATCAGGCGGCGTCTCTCAGAGCAGCTAGCTCACACACCCACCACATTCAAACGGGACCCAGAGGACCCTTCAGCAGTGGCCCTCAAGGAGCCGTGGCAGGAGAAGGTTCAGCGGATAAGGGAGGGCTCCCCATATGGACACATCCCTACCTGGAGGTTGTTGTCAGTCATCGTCAAGTGTGGCGACGACCTTCGGCAAGAGCTCCTGGCCTCTCAAGTGCTGCAGCAGCTCCAGaTCATCTGGGAACAGGAGCGCGTGCCTATCTGGATCAAACCCTACAAGATCCTGGTGATCTCCTCTGACAGCGGCATGATTGAACCCATAGTCAACGCAGTGTCCATCCACCAGGTGAAGAAACAGAGCCAGATGTCTCTGCTGGACTACTTCCTGCAGGAACACGGTACCCACACCACCGAGGCCTTCCTCACGGCCCAGCGCAACTTTGTCCAGAGCTGTGCAGGCTACTGTCTCATCTGCTACCTGCTGCAGGTCaaagacagACACAATGGCAACATCCTGTTGGACGCTGAGGGCCACATCATCCACATAGACTTTGGCTTCATTCTGTCCAGCTCGCCCCGCAACCTGGGCTTCGAGACCTCTGCTTTCAAGCTCACCAACGAGTTTGTAGACgtgatgggaggtctggatggagacATGTTTAATTACTATAagatgctctgtctctctctaggtgatgggaggtctggatggagacatgtttaaTTACTATAagatgctctgtctctctctaggtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131680 lncRNA upstream 110377 13441854 ~ 13473747 (+) True G114717
TU131675 lncRNA upstream 152418 13429701 ~ 13431706 (+) True G114712
TU131651 lncRNA upstream 239941 13339715 ~ 13344183 (+) False G114689
TU131650 lncRNA upstream 243832 13339561 ~ 13340292 (+) False G114689
TU131887 lncRNA downstream 82098 13683696 ~ 13684785 (+) True G114897
TU131898 lncRNA downstream 116634 13718232 ~ 13718727 (+) True G114904
TU132023 lncRNA downstream 133130 13734728 ~ 13734956 (+) True G114990
TU132038 lncRNA downstream 153326 13754924 ~ 13756558 (+) True LOC110520780
TU132048 lncRNA downstream 160225 13761823 ~ 13762180 (+) True G115009
XM_036938495.1 mRNA upstream 1519 13574497 ~ 13582605 (+) True LOC110517609
XM_021587748.2 mRNA upstream 196203 13383188 ~ 13387921 (+) True LOC110507631
XM_036938394.1 mRNA upstream 253448 13324961 ~ 13330676 (+) False LOC110507612
XM_036938470.1 mRNA downstream 2706 13604304 ~ 13623972 (+) False LOC110520769
XM_036938524.1 mRNA downstream 23035 13624633 ~ 13630579 (+) False LOC110513073
XM_036938529.1 mRNA downstream 23968 13625566 ~ 13630579 (+) True LOC110513073
XM_036938534.1 mRNA downstream 31337 13632935 ~ 13643895 (+) False LOC110520770
XM_036938540.1 mRNA downstream 33324 13634922 ~ 13643895 (+) False LOC110520770
TU131145 other upstream 619194 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 821297 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 862809 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 863431 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1874347 11708603 ~ 11709777 (+) True G113396
TU131856 other downstream 20379 13621977 ~ 13623965 (+) True LOC110520769
TU131892 other downstream 100012 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 359663 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 540284 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 632916 14234514 ~ 14236854 (+) True G115189

Expression Profile