RNA id: XM_036938470.1


Basic Information

Item Value
RNA id XM_036938470.1
length 4691
RNA type mRNA
GC content 0.49
exon number 27
gene id LOC110520769
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13604304 ~ 13623972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAATTACTTACAAACTGACCCCACCTCCTTAGAAGAAGTCAGGCTAGGCTATTCAATCAACGTTGAAGCACCGGGTGAAAGTTTTTACATTGATAGAAAACAGCATATAATACCGACAATTAAATGAACCCTCTTTAGATTTATAAGTATGATATTACGTTTGAGTTTCACCTGAGCTCGTGACACTCCTTGCTTAGCTCCTCAAGCTTTCCGTGTAAGTTGGATTTCTCAATCAGGAAGTAATATCAAGTTAAAATGgGGAGTAAGGAGCGCTACCACTGGCAGACCCAGAATGTTAAGATCAGCGGGGTGGATGACATGGTCCTGCTCTCCAAGATCAACGAGGAAGCCATCACTGACAACCTCAAGAAGAGATACATGGACGACTACATCTTTACCTACATAGGGTCGGTGCTGATCTCTGTCAACCCCTTTAAACAGCTGCCCTACTTCACCGACAGAGAGGTGGAGCTCTACCAGGGAGCTGCCCAGTATGAAAACCCCCCTCACATCTATGCCCTGGCTGACAACATGTACCGCAACATGATGATCGACTGTGAGAACCAGTGTGTCATCATCAGTGGGGAGAGTGGAGCAGGAAAGACTGTAGCAGCTAAATACATAATGGGTTACATCTCCAAGGTGTCGGGCGGAGGTCCCAAAGTCCAGCACGTAAAAGACATCATCCTCCAATCCAACCCTCTCCTGGAGGCCTTTgggaatgccaagactgtgcgcAACAATAACTCTAGTCGCTTTGGGAAGTACTTTGAGATCCAGTTCAGCCGTGGAGGAGAGCCAGACGGAGGGAAGATCTCCAACTTCCTGTTGGAGAAGTCCAGGGTGGTGTCACAGAACCAGGGAGAGAGGAACTTCCACATCTACTACCAGCTCCTGGGGGGCGCCACTAAAGAGATGAGGGAGAACCTTGGTGTCACCACACCTGACTACTACCTCTACCTGAACCAGTCTGGCACCTACACCGTGGAGGATGTCAACGATAAGAAGGAATTCTCTGACACCAtggAGGCCATGTCAGTGGTGGGCCTGTCTGTAGATGATCAGGACATGGTGATGCAGATCGTAGCAGGCATCCTGCATCTGGGTAACATCGCCTTCAGAGAGGAGGGAAACTACGCTGTGGTGGAGAGTGAGGACTTCCTGGCGTTCCCGGCCTACCTGTTGGGAATCTCCCAGGAGGGTCTGAAAAACAAGCTGACCAGCCGGATCATGGACAGCAAGTGGGGAGGCAAGACGGAGAGCATCGCTGTCACTCTGAACACAGAGCAGGCCTCCTTCACACGGGACGCCCTCTCCAAAGCCCTCTACTCACGCCTGTTTGACTTTCTTGTGGatTCTATCAACAAAGCCATACAGAAAGACCATGAGGAATTCAATATTGGGGTGCTGGACATCTATGGCTTTGAAATCTTCCAGAAAAACGGCTTTGAGCAGTTCTGCATCAACTTTGTGAATGAGAAGCTGCAGCAGATTTTCATTGAGCTCACGTTAAAAGCTGAGCAGGAAGAATATGTGCAGGAAGGGATCAAGTGGACGCCGATCGAGTACTTTAACAACAAAATCGTGTGTGACCTCATTGAGTCCAAACTGAACCCCCCAGGCATCATGAGTATCTTGGACGATGTGTGTGCCACCATGCATGCTAAGGGGGAGGGTGCAGACCAGACCCTGATCCAGAAGCTACAAGCGGGAATCAGCTCCCATGAGCACTTCAACAGCTGGAATAAAGGCTTCATAGTGCACCACTACGCTGGCAAAgtgtccTATGATGTCAGTGGCTTCTGTGAGAGGAACAGAGATGTGCTCTTCAACGACATCATTGAGCTGATGCAGAGCAGTGAATTTGCCTTCATAAAAACCCTTTTCCCAGAAAACCtagaggcagagaaaaagggcCGTCCTACCACCGCCAGTAGCAAGATCAAGAAACAAGCCAACAACCTGGTCCAGACCCTGATGAAGTGCACCCCCCACTACATCCGCTGTATCAAGCCCAACGAGACCAAGAAGCCTCGGGACTGGGAGGACACTCGGGCCAAACACCAGGTGGAGTACCTGGGCCTGCGGGAGAACATTCGTGTGCGCCGCGCCGGGTACGCATTCCGCCGAGCCTTCGCCAAGTTCCTGCAGAGGTACGCCATCCTGACCAGGGAGACATGGCCCCGgtggacaggggaggagaggaagggggttcTGCACCTCCTCCACTCTGTCAACATGGACCAGGACCAGTACCAGCTGGGAAAGACTAAGATCTTCATCAAGGCCCCAGAATCATTGTTCTTgctggaggagatgagggaaagGAAATATAACGGATATGCTCGGGCCATCCAGAAGGCCTGGCGCAAACACATCGCCGTCCGCAAGTACGTCAAGATGAGAGAGGAAGCCTCAGACATCCTACTGAataagaaggagaggaggaggaacagcctcAACAGGAACTTTGTGGGCGACTACATCGGCACCGACAACCACCCCGAGATCCGGCAGTTCGTGGGCCGCCGGGAGAAGATCGATTTTGCAGATGTGGTTGCCAAATATGACCGCAGGTTTAGGACTGTGAAGCGTGACCTCATCCTGACCCCTAAGTTCCTGTATCTGATTGGTCGGGAGAAGGTGAAGCAGGGACCAGATAAGGGACAGATCCACGAGGTTCTGAAGAGACAGATAGAAGTGGAGAAgattcagtcagtctctctcagcACCCTGCAGGATGACTTCTTCATCATCCACGAGGAGCATTACGACAGTGTCCTTCAGTGCATCTTCAAGACGGAGTTCCTCAGTCTGCTCTACAAACGTTATGATGAGAAGACCCAGAGGAAGCTACCGCTCAAGTTCAACAACCTACTGGAGTTTAAGGTGAAGAAGGGAGGTTGGGGGCCGTTCTCTGCTGCTGGCTCCAGGCAGATCCAGTTCCAGGCGGGCCAAGGAGAAGAGGCGGTTGTGAAGCCCAGCAGCAAAGTCCTCATAGTCACCATCGGACCCGGGCTCCCAAAGAACTCCAGACCGACCCGCAGGGACAACAGGAAAAGTCGCTACATGGGAAACCAGACTCCAGGCTCAGGACAGCAGTCACAAGGCGCCCCCAGGAGCAGAGGCCGAGGTGGGGGTGGTGGTCAGCGGGGTGGTGGTCAGCGGGGTGGGCCACCCTCGTCCAGGGTCTCTCTGCTCCGCCGGCAGTCCAGTATGGAGCAGCCTACACTACCCCGACAACAGAGGTCCCGGCAGACTAACAACCACTCCAACAACCAGAGCCAGGCAGACACCGCTTTCATGAACGTGCCTGACCAGGGAGTGGCTGGTGTTCATCGTAGACGCTCGAAGGAGGTCAAGCCTTCCCCAGGAGCGGGCCGCCCCAAGCCTGCCCCCAAGCCCAAGCCTCGCTCCCCTGAATGCCGAGCGCTGTATGCTTACGACGCCCAGGACACTGATGAGCTGAGCTTCAACGCGGAGGATGTCATTGAAATCCTCACTGAAGATCCATCAGGCTGGTGGTACGGTCGTCTTCGCGGGAGGGAAGGCATGTTTCCTGGGAATTATGTAAAGAAGATTTAGGCTGGAGCGATGAGGGACTTGTCTAAAGGTAGAAGATCTAGACTGGATCAAGGGACATAAGATCTAGATTGGAGCGATGAGGGACTTGTCCAATGAGAGAAGATCTAGACTAGAGCGATGAGTGACATGTCCAATGAGAGAAGATCTAGACTGGAGCGATGAGGGACATGTCCAATGAGAGAAGATCTAGACTGGAGCGATGAGGGACATGTCCAATGAGAGAAGATCTAGACTGGAGCGATGAGGGACATGTCCAATGAGATTAAGGAGTCAGGTGGCAACAGTAGAATTACAACCATACCAAGTGCATTACTACAGAGACAAAacaaaaaagcataattaaagCATTTCTCCATACCATCTCTCTTTGGAGTCCGAGACAAGGGAATGCGATGATTTTTGCCAAAGATGGTTTGACGTGCAAATACTACTAATTTTTATCAATGGATTTTATCTATTGTTTTAGCATGTGTTAGCTTTTTTTAAAGACTGAACAAATAGACGTTTTGTTTTATCCTGCATCTTTTTATAGCCATTTACCTCGAGTGTTCAAATAAATCTTAGTTTTATTTGCTCTTTCACGTTTGTTTAATACATAGGACCaaatgtccataataatctcagtTCAGGTGGAGTTGGGATAGAATGGGtaattacaaaacatttttgaCAAGATATatattgtaaaatatatattagTTGTGTATTTTATGTGATTATCCATGTCTTAGGTAGATATTTCACAATTCTATATTAGTGAAGATTTGTAAGGctgagtttacacaggcagcccaattctgatgttTTATCCAATTATCGGCAAAAGGGCTGGTCTGATTGGCCAGAAGACCAATTAATGGGAAAATAattagaattgggctgcctgtgtaaacccaGCCTTACCGATCTTCACTGATATAGAATTGTGAAATATCTACCTAAGATGATGATGAACCATATAAGACATTAACAGAGCCTACCATTTCCCATGTTTTATAATAGGCTACATGGTACATGTTATTACCCAGCGATAGTCTGTTAAAAAAGACAGTTGATTGTTTGTCGACAGTTGACATAAAAATTAAAAGAATTGTAAACCATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131680 lncRNA upstream 130557 13441854 ~ 13473747 (+) True G114717
TU131675 lncRNA upstream 172598 13429701 ~ 13431706 (+) True G114712
TU131651 lncRNA upstream 260121 13339715 ~ 13344183 (+) False G114689
TU131650 lncRNA upstream 264012 13339561 ~ 13340292 (+) False G114689
TU131887 lncRNA downstream 59724 13683696 ~ 13684785 (+) True G114897
TU131898 lncRNA downstream 94260 13718232 ~ 13718727 (+) True G114904
TU132023 lncRNA downstream 110756 13734728 ~ 13734956 (+) True G114990
TU132038 lncRNA downstream 130952 13754924 ~ 13756558 (+) True LOC110520780
TU132048 lncRNA downstream 137851 13761823 ~ 13762180 (+) True G115009
XM_036938477.1 mRNA upstream 156 13584135 ~ 13604148 (+) True LOC110507693
XM_036938484.1 mRNA upstream 2706 13584124 ~ 13601598 (+) False LOC110507693
XM_036938495.1 mRNA upstream 21699 13574497 ~ 13582605 (+) True LOC110517609
XM_021587748.2 mRNA upstream 216383 13383188 ~ 13387921 (+) True LOC110507631
XM_036938399.1 mRNA upstream 274610 13324963 ~ 13329694 (+) False LOC110507612
XM_036938524.1 mRNA downstream 661 13624633 ~ 13630579 (+) False LOC110513073
XM_036938529.1 mRNA downstream 1594 13625566 ~ 13630579 (+) True LOC110513073
XM_036938534.1 mRNA downstream 8963 13632935 ~ 13643895 (+) False LOC110520770
XM_036938540.1 mRNA downstream 10950 13634922 ~ 13643895 (+) False LOC110520770
XM_036938538.1 mRNA downstream 11121 13635093 ~ 13643895 (+) False LOC110520770
TU131145 other upstream 639374 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 841477 12762232 ~ 12762827 (+) True G114263
TU131041 other upstream 882989 12720730 ~ 12721315 (+) True G114244
TU131040 other upstream 883611 12720408 ~ 12720693 (+) True G114243
TU129672 other upstream 1894527 11708603 ~ 11709777 (+) True G113396
TU131892 other downstream 77638 13701610 ~ 13709374 (+) False LOC110520780
TU132139 other downstream 337289 13961261 ~ 13962812 (+) True LOC110535330
TU132281 other downstream 517910 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 610542 14234514 ~ 14236854 (+) True G115189
TU132383 other downstream 782072 14406044 ~ 14407912 (+) True G115289

Expression Profile