RNA id: XM_036938552.1


Basic Information

Item Value
RNA id XM_036938552.1
length 3834
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC118937748
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13650726 ~ 13661631 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTTCCAGTTGTGGCGCTATAGTTCTGCCACCGTAAAAGCCTGAGAACGAGGAGTGTAGCCTACCGCAGAACATAGGAGACGTTTTACTTTACCACATCTCGACTCGTGAGCTGACCGTTTTAAAGATATCATGTTCGTTTGAGGGAGAAAGCGGATTCCACACTGATGTTACGGCCCTACAGTACCTGAGGCAGTGGAAATCTGGGGAGACGAGCATCCACAGGATTCAGTGAGAGGGAAGAGGTGACATTCTAAACGTTAAGAGAAAGGAATAGAACCAGACTTGGCACTGAGCCTTGGGGGACACCCATCTTTTTTGGGGACTGGACTGGTTGCAACGTCCTCACCATTCCACCCTAAGCGGCGTTCTTGTTCTCCAACAcgtcctcctctgcctgcagggCATCCAGAGAACCAGGGCCTCAGAACCCACTCAGAGAAAAGCAGCAGCACAGTAGGGATGAGCGAGTTCTGGCACAAGATTGGCTGCTGCGTGGTGGCCAAACCTCCACCGAGGAAGAAGCGCAGGAAAATCGACCGCAGCATGATCGGCGAGCCCACAAACTTTGTCCACTTGACACACATTGGCTCTGGGGAGATGGCAGAGGGCCGGGCCCCGTCGGGGCCGGTCCAGGATAAGATGAGGTCAAAAGGACCCAGTGCCAACGGCCGCAAGAGCATGTTATAGCTGCTGCCTACCAAGCATGGAGAACCATTTCCATCCTCCTCTATGCGGCCCTCTCATCCCAAATCGAAAGCAGTCACTGCAGTGTAACCTGTTTCCAAAGGAGCACTTGGCAAACCTGAGAGCGGACCCTAATAGAGAGCAGAGAGGCTCCTCCTGACGTCTGCAGGATCTATTTAGCCAAACAGGACGATGGCCTTTCTGTGGTCACCACCAGAATCGCCCTGCTCAGAGGAGGATAGACTGACATGTTTTTTTATGCTTTTTAAAGAAAACTATTTGTCTTTCTGATGGACTTTGGACTTCCACTGTATTTCAGCCAACAACGTTACTGTGTCTGTGCCAGCAAGCGTATGGGATAGAGCCGGTGAGAGTGTTTAGCTACATTTGTTGACTAACATGGCTGATTCTATTTCAGGAAGTGAAGATTATGTTCTCAAGGATTACCTGAATGTTGCAAACCATTGACCTACTGCCAAACAAACTATTTTGTGTATCTGTCTAATGAATGAGGATGCACCTTTTATTTTCCTACAGTGCATAGTTAAAGGTGTCttcatgtgtgtgtttataagggCAAAATGCTATGTGATTTTGTTGCTGTTTagataccagtactgagtagtgTTATTTTGATTGTACCAGTTGCCATAGAGCTGCATTTGGACTGCTACCCAGTTGCCATAGAACCCCATTTGGACTGCTACCCAGTTGCCATAGAACCCCATTTGGACTGCTACCCAGTTGCCATAGAACCCCATTTGGACTGCTACCCAGTTGCCATAAAGCCCCATTTGGACTGCTACCCAGTTGCCATAGAACCCCATTTGGACTGCTACCCAGTTGCCATAGAGCCCCATTTGGACTGCTACCCAGTTGCCATAGAGCCCCATTTGGACTGCTACCCAGTTGCCATAGAGCCCCATTTGGACTGCTACCCAGTTGCCATAGAGCCCCATTTGGACTGCTACCCAGTTGCCATAGAACCCCATTTGGACTGCTACCCAGTTGCCATAGAGCCCCATTTGGACTGCTACCCAGTTGCCATAGAGCCCCATTTGGACTGCTACCCAGTTGCCATAGAGCCCCATTTGGACTGCTACCCAGTTGCCATAGAACCCCATTTGGACTGCTACCCAGTTGCCATAGAGCCCCATTTGGACTGCTACCCAGTTGCCATAGAGCCCCATTTGGACTGCTACCCAGTTGCCATAGAGCCCCATTTGGACTGCTACCCAGTTGCCATAGAACCCCATTTGGACTGCTACCCAGTTGCCATAGAGCCCCATTTGGACTGCTACCCAGTTGCCATAGAGCCCCATTTGGACTGCTACCCAGTTGCCATAGAACCCCATTTGAACTGCTACCCAGTTGCCATAGAACCCCATTTGGACTGCTACCCAGTTGCCAAAGAACCCCATTTGGACTGCTACCCAGTTGCCATAGAGCCCCATTTGGACTGCTACCCAGTTGCCATAGAACCCCATTTGGACTGCTACCCAGTTGCCATAGAACCCCATTTGGACTGCTACCCAGTTGCCATAGAACCCCATTTGGACTGCTACCCAGTTGCCATAGAACCCCATTTGGACTGCTACCCAGTTGCAagcatacaggtaactgccaaaataaaggaaaccccagcatggtgtcttaatagggcattgggcACCACGAGCCGCTAGAACAGCgccaatgcaccttggcatagattctacaagtgtctggaactcttggagggatgcgacaccattcttccaccagaaattccatcatttggtgttttgttgatggtggtgggaaACGCTGTCTCAGGCTCCGCTCCAGAATATCCCAATAGTGTTCAATTggtttgagatctggtgactgagacggccatggcatatgggtTACATAGTTTTCATACTCATCAAACCAttgtgaccactcgtgccctgtggatggggtcATTGTCATCCTGGAAGAGACCACTCCCATCAAGGTAGATCTGTTTCACCCTACAGGTAGCAGGTGATCACTCAGAATAGCTGTGTATTCACTGGAGTTGATCTTGTCCTATATGGGGTTGAGTGgacctaaaccatgccaggaaaatgcaCCTCCACACCATAAGAGCTGCCAATAAGTACCCTAATTTACTGGTGTTTCCTTTTATTTGAGCAGTTACCTGTAGCTGGTCACTGTGATACACAATTTACTAGCACCTACTCTGAAAACCCCTAACTATTAGTCAGCAGGAAGAGTCTGTTAGTAACaggggttgttgttgttgaaattcgAAACACCCTGACCGTTACGGGGCTTTCCAGTGATCTGTCCTGGAATTACTCGGGAATGCCACTCATTAAATCAACTGCATCGAAGGAACATTCCATAAGGTAGTTTGTTCTCTTGTCGGGGGGGGATGTCCACCCCCTTGATCAGAATGGAAAATTCCAACCATTTCACTGTGCATTCCCCTTGTAATTTCTATATGGCCTCCCACTTGACCTTGTTGTAGGCGACGTGCACTCCAAGCTGGCTTGTGTCCCACCATAACATCCACACTATTCTGAAACCAGGTGGGAGTTTTAAATATCTGATTTAAATCATGCAGTAGAAATGAAAGTTTGTTTCCTGTACACAACTGTATTTCTGACGTGCTTAGTATACACAATCTGTTGTGAGTCACTCTGTAGTTTTTTTGCTAAGTGTGTCCATACGGGGAAAAACTCTGAAATtgaatgttttttaaatattgtaTCTTATGTGATTTCCTAGGCCGTTATCCTATAGCAGAACATATGGCGTATGGATGGTGTTGTACATGTTGTATGTTGTCCCTTCACTAATACCTTATCTGTTTTATACACTGGGCTTAAAGTTGACTTAATGCTGAAGGTGGGACTTTGCATATTGCTTGGTGGCTTTCCTATCTTTGGGAGAGCTTGTAATACTGAGTACATTCTCAGCCCAACAGAATGACTGCTGCCTTGAAGTTTCTGGAACAATGTACATTGGTAACGTCAGTAACTTGAGTCTGTTGGCATTTAAGTTTCTTTCCCATCTTTATCATGGTTGTTGTTAGACCAAAACTCATGTTCATTAGAAATGATTTGTGCAATCTCTTGATTTTTCCTGAAATACAGTTAACATTCCGAATAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131957 lncRNA downstream 6268 13642877 ~ 13644538 (-) True G114935
TU131984 lncRNA downstream 26421 13623996 ~ 13624385 (-) True G114951
TU131932 lncRNA downstream 26834 13565419 ~ 13623972 (-) False G114923
TU131931 lncRNA downstream 26834 13622794 ~ 13623972 (-) True G114923
TU131929 lncRNA downstream 86087 13564063 ~ 13564719 (-) True G114921
TU131996 lncRNA upstream 475 13662104 ~ 13662309 (-) True G114963
TU132033 lncRNA upstream 81167 13742796 ~ 13745127 (-) True G114996
TU132036 lncRNA upstream 84451 13746080 ~ 13746313 (-) True G114998
TU132054 lncRNA upstream 113142 13774771 ~ 13775073 (-) True G115015
TU132060 lncRNA upstream 123724 13785353 ~ 13785579 (-) True G115021
XR_005035141.1 mRNA downstream 36699 13613625 ~ 13614107 (-) True LOC118937746
XM_036938506.1 mRNA downstream 150508 13496599 ~ 13500298 (-) False LOC110534058
XM_036938437.1 mRNA downstream 197142 13405882 ~ 13453664 (-) False LOC118937745
XR_005035137.1 mRNA downstream 297171 13339565 ~ 13353635 (-) False LOC110507671
XR_005035134.1 mRNA downstream 331653 13316759 ~ 13319153 (-) True LOC118937736
XM_036962010.1 mRNA upstream 166650 13828279 ~ 13914373 (-) False LOC110535394
XM_036962016.1 mRNA upstream 166650 13828279 ~ 13914376 (-) True LOC110535394
XM_036962206.1 mRNA upstream 264552 13926181 ~ 13935276 (-) True LOC110534076
XM_036962150.1 mRNA upstream 274209 13935838 ~ 13937466 (-) False LOC110535382
XM_036962145.1 mRNA upstream 274209 13935838 ~ 13937539 (-) True LOC110535382
TU131946 other downstream 68200 13574535 ~ 13582606 (-) True G114928
TU131917 other downstream 150523 13494448 ~ 13500283 (-) True LOC110534058
TU131789 other downstream 318300 13330748 ~ 13332506 (-) False G114812
TU131790 other downstream 318300 13330748 ~ 13332506 (-) True G114812
TU131788 other downstream 318497 13330748 ~ 13332309 (-) False G114812
TU132581 other upstream 300556 13962185 ~ 13976561 (-) True G115431
TU132617 other upstream 395913 14057542 ~ 14060958 (-) True LOC110535427
TU132669 other upstream 562230 14223859 ~ 14224919 (-) True G115492
TU132791 other upstream 748137 14409766 ~ 14412176 (-) True LOC110535605
TU132828 other upstream 864439 14526068 ~ 14526520 (-) True tmem245

Expression Profile