RNA id: XM_036962010.1


Basic Information

Item Value
RNA id XM_036962010.1
length 2607
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110535394
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 13828279 ~ 13914376 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCAGTGAAATCATCTTTGGGACTGTTCTCCAACCGTCTTTCAtaaagaggaaagggggagacacAACTACATTGAACGTCAAGAGGGCAGGCTCCTCTATCGCTGCTGATATAAACAATGGATTGAGAATGGGGTTTGGTTTTCTGTGTGGTGAAGTCATCTTTCTTAGCCGAGTTTGCTCAAATCGGAGCCTTTGAATTTGAAAAGTTTTTCTTGTCAGCATCACTCACTGGTTTGGGATTATTTTTGTTCATGTTTTTATAAGAACactcgccacacacacacaccatgagcaACATCTATGAGTCTGCGGCCAACACCCTTGGTCTGTTCAACAGCCCGTGCCTGGCCAAAGTGGAGCTGCGGGTGACCTGCAAGGGCATCTCAGACCGGGACGCCCTGTCCAAGCCAGACCCCTGCGTACTCATCAAAATGCAGTCCCACGGACAGTGGCTGGAGgttgACAGGACAGAGGTGATCCGTAGCTCCATAAGCCCCACCTTTTCTAAAGTCTTCACCGTGGACTTCTACTTTGAGGAAGTACAGCGGCTACGTTACGAGCTCTATGACATCAGCAGCAATCACAACGGCATCAAGGAGGCTGACTTTCTGGGGGCCATGGAGTGCACACTGGGACAGATTGTGTCCCAGAGGAAGCTCACCAAACCACTGCTCAAACAGGGCAGCACAGTGAGCAAGTCCTTCATCATGGTCACCGCCGAGGAGCTGACAGGGAATGATGATTATGTGGAACTTTCTTTCAGTGCCAGGAAACTTGACGACAAGGACTTTTTTAGCAAATCAGACCCTTTCCTGGAGATCTTCAGGATGAACGATGACGACACGCTACAGCTTGTGCACAGAACAGAGACTGTTATGAACAACCTTAACCCGGTGTGGAAAACCTTCAAGACTTCCCTGAATTCCCTCTGCAGTGGAGACCATGACCGGCCTCTAAAGtgcacaGTGTGGGACTGGGACTCCAATGGGAAGCACGACTATATTGGTGAATATCAGGCCACATTCAAAGAGATGAGAGGGGCAATGGATGGGAGACAGGTCCAATGGGAGTGTATAAACCCCAAGTATCAGATCAAGAAGAAGAATTACAAGAACTCTGGTATCGTCATTCTCAATCAGTGCAAGATCATCAAGATGCACTCCTTCCTGGATTACATCATGGGAGGCTGTCAGATCCAGTTTACAGTAGCTATTGATTTCACCGCCTCGAACGGAGATCCTCACAACAGCTGCTCCCTACACTACATCCACCCATACCAGCCTAACGAGTACCTCAAAGCTCTGGTCGCTGTAGGGGAGATCTGCCAGGATTACGACAGTGACAAAATGTTCCCAGCGTTTGGCTTCGGCGCTCAGATTCCGCCCGACTTCAAGGTTTCTCACGATTTTGCAGTGAATTTTAATGAGGAAAACCCAGAATGTGCAGGTATCCAAGGGGTGGTGGAGGCCTATCAGACATGCCTTCCTAAGCTTCAGCTCTACGGCCCCACCAACATCGCCCCCATCATCCAGAAAGTAGCCAGCTCCGCTTCACAGGAAATGCACACCAAGGAGGCCATGCAGTACTTCATTCTGCTCATCCTAACGGACGGAGTGATCACAGACATGGCAGACACCCGCGAGGCCATCGTCCAAGCCTCCCACTTGCCCATGTCCATCATTATTGTAGGCGTGGGAAGTGCTGACTTCAGTGACATGCAGATGCTGGATGGAGATGATGGAATCCTTCGCTCGCCCAAGGGGGAGCCCTGCCTACGAGACATCGTCCAGTTCGTCCCCTTCCGCAACTTCAAACATGGCTCACCTGCAGAGCTGGCGAAGACTGTCCTAGCAGAAGTGCCCAACCAGGTGGttgactactacaacaacaagGGCATCAAGCCCAAAGTGCCCAGTGAGTTCGAGTCTTCCAGGACATTCGCCCCCTGAGAGGAGGGGCCCAACGCACTCGATACAACAGATAGCACCTTACGCTGACTAACTGAAAAGTTTACCGTTTTGCTCTTCGTTTGTTTGTTCTTTTCATTGTGCATGCGTGGCCTCCGAGGCTTGCATCTGTAAAGCAACTGTATCATTCAAAGCATTGGTATGGTGGGGGGACACACAAACGAACAACCAAACTGTCATCCCTACAGATGAACAACTATCGATGAAGGAATGTATAGAACACCCCCGTTCCTTTTTTTATAAGAGTTTGTTGAGATTTTGCTAAATTTCTTGATATTCATACATTGTAAAACATTTTGGACCACAGTGAATGAACTAGCTACCTGCGTTTAGAAACGTCTGCGTCCTCAGTAGTCCATATTGCAGATAAGGCAGATGCATGAAGTGTTGTTTTGCATGCTGGTAATAAAGCAGACACTGTTTTCTCATGGTTCATGTTGTTTTCTTAGTGAACAATAGAGTTGACAGTATTGTAGGGATAAAGGACATTCTACTATGAAGCATGTTGACAGCACAAATTGAGTATTCTGGAAGTTCACTGGAGAATATTATGGCCACATAATTTTCCGTTGTCATGTTGCAATGCAGTATTCTGTGAAATGATGAATTACTTATAATAATAAAAGCTTTATCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132080 lncRNA downstream 22401 13805665 ~ 13805878 (-) True G115041
TU132070 lncRNA downstream 31758 13796216 ~ 13796521 (-) True G115031
TU132069 lncRNA downstream 32220 13795775 ~ 13796059 (-) True G115030
TU132060 lncRNA downstream 42700 13785353 ~ 13785579 (-) True G115021
TU132054 lncRNA downstream 53206 13774771 ~ 13775073 (-) True G115015
TU132558 lncRNA upstream 4746 13919119 ~ 13919725 (-) True G115414
TU132598 lncRNA upstream 102461 14016834 ~ 14017064 (-) True G115443
TU132605 lncRNA upstream 117593 14031966 ~ 14033473 (-) True G115450
TU132624 lncRNA upstream 122988 14037361 ~ 14119171 (-) True G115460
TU132615 lncRNA upstream 140785 14055158 ~ 14056831 (-) False LOC110535427
XM_036938559.1 mRNA downstream 166648 13650806 ~ 13661631 (-) False LOC118937748
XM_036938552.1 mRNA downstream 166650 13650806 ~ 13661629 (-) False LOC118937748
XR_005035141.1 mRNA downstream 214172 13613625 ~ 13614107 (-) True LOC118937746
XM_036938506.1 mRNA downstream 327981 13496599 ~ 13500298 (-) False LOC110534058
XM_036938437.1 mRNA downstream 374615 13405882 ~ 13453664 (-) False LOC118937745
XM_036962206.1 mRNA upstream 11808 13926181 ~ 13935276 (-) True LOC110534076
XM_036962150.1 mRNA upstream 21465 13935838 ~ 13937466 (-) False LOC110535382
XM_036962145.1 mRNA upstream 21465 13935838 ~ 13937539 (-) True LOC110535382
XM_021620220.2 mRNA upstream 42657 13957030 ~ 13960254 (-) True LOC110535305
XM_036961928.1 mRNA upstream 66913 13981286 ~ 14017797 (-) False LOC110534084
TU131953 other downstream 166688 13653902 ~ 13661591 (-) True LOC118937748
TU131946 other downstream 245673 13574535 ~ 13582606 (-) True G114928
TU131917 other downstream 327996 13494448 ~ 13500283 (-) True LOC110534058
TU131789 other downstream 495773 13330748 ~ 13332506 (-) False G114812
TU131790 other downstream 495773 13330748 ~ 13332506 (-) True G114812
TU132581 other upstream 47812 13962185 ~ 13976561 (-) True G115431
TU132617 other upstream 143169 14057542 ~ 14060958 (-) True LOC110535427
TU132669 other upstream 309486 14223859 ~ 14224919 (-) True G115492
TU132791 other upstream 495393 14409766 ~ 14412176 (-) True LOC110535605
TU132828 other upstream 611695 14526068 ~ 14526520 (-) True tmem245

Expression Profile