RNA id: XM_036961829.1


Basic Information

Item Value
RNA id XM_036961829.1
length 5186
RNA type mRNA
GC content 0.54
exon number 20
gene id LOC110534090
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14027966 ~ 14043643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTATCAGACGAAAGCATCAAACAAAAAACATGTAACGTTAGGCTTCTAACATATTGCTTTCGCATCTAGTTTGTGTTTTGAAAGTGAAATCTAGAACCGGAAGTGACGCTTGTTTACGTGTCTATGCACCCTGCGGagggatattatatatatatttttgtatcttATTGGATTTTACAGGAAATGCTACTTTccttcaactgtcagctgaaccCACGGAATAAGCTAAATCTCGACGctcaatttatatattttttcaaattgAGTCGTCTTAGCAAAATGCATGGGGATGACATATTAGAACCGATGAAGTTAGCTAGATGCTAACCAGATACGAAGCCAAACAGCACTACACCGCATCTCAACCATCTGGTAAACAATACCCTGCACTGTAATTTCATCAACGTCACGTGCATTCTGTGTTCCATTTGTATTGACCCTGGTCAGAGTGAAGCAGAACCATGGGGAATCAGCTGGCAGGGATCGCTCCTGCCCAGATCCTATCTGTCGACAGCTACTTCTCTGACATCAATGATCACGAGTACGACAAGAGCCTGGGCAGCACCCGCTTCTTTAAGGTGGCCCGCGCCAAGCACAGGGAAGGCCTGGTGGTGGTGAAGGTGTTTGCCATCCAGGACCCATCTCTACCTCTCACCAGCTACAAGCAGGAGCTGGAGGAGCTAAAGATCAGACTGCACTCGTGCCAGAACTGCCTGCCCTTCCAGAAGGCCTCCCTCACTGAGAAAGCAGCCATCCTCTTCCGCCAGTATGTCCGGGACAACTTGTATGATCGCATCAGCACGCGACCCTTCCTCAACAATGTGGAGAAGCGCTGGCTAGCCTTCCAGATCCTCACCGCCGTAGACCAGGCGCACAAATCGGGCGTGCGCCACGGTGACATTAAGACAGAAAACGTGATGGTGACCAGCTGGAACTGGGTGCTGCTCACAGACTTTGCCAGCTTCAAGCCCACCTATCTGCCTGAGGACAACCCAGCTGACTTTAATTACTTCTTTGACACGTCTCGACGGAGGACATGTTACATCGCCCCCGAGAGGTTTGTGGATGGGAGTATGTTCACCACAGAGAGCGACCAGAACACCCCTCTGGTGGACCTCACCAGCAACAGccagaggagcaggggagagctCAAACAGGCAATGGATATCTTCTCAGCAGGTTGTGTGATCGCAGAACTCTTCACAGAGGGAGTACCACTGTTTGATCTCTCCCAACTTCTGGCGTATCGCAAAGGACACTTCCAGACAGAGCATGTTCTCATGAAAATAGAAGACCATTACATCAGAGAACTAGTGGCCCAGATGGTGCAGCGGGAGCCGGAGAAGCGTCTGACTGCGGAGGAGTACCTGAAGCAGCAGAGAGGTAACGCCTTCCCAGACATCTTCTATACCTTTCTGCAGCCCTACATGGCCCAGTTTGCCAAGGAGACCTTCCAGTCGGCAGACGAGCGTGTGCTGGTCATCCGCAAGGACCTGGATAACATCCTCCATAACCTCCGCGGGGGAGGGTCAGGTGGGTCGACGGAGAAGCCTGAGAAGGGGGACCAGGAGTCTAGTGTGGTGTCGACCAAGGAGGAGCAGGGTCTGGTGGTGCTGGTGTCTGTCATCACCTCCTGCCTCCAGACGCTGCGTTCGTGCGACTCCAAGCTGGCGGCTCTGGAGCTGGTGCTGCACCTGGCGGGCCGCCTCAGGGTGGAGACGCTGCTGGACCGCATCACGCCATACCTGCTGCACTTCTGCAGCGACCTGGCGCCACGGGTTAGGGCCCAGGCCGTACGCACCCTAGCCAAGGTGCTGGCGCTGGTGAAGGAGGTTCCCCGTAACGATGTCAACATCTACCCAGAGTACATCCTGCCAGGCATTGCCCACCTGGCGCAGGACGACGCCACCATCGTCAGGCTGGCATATGCAGaGAACATAGCACACCTGGCTGAGACAGCTTTGCGTTTTTTAGAGCTCGTTCAGGAGAATAACCTGAATATGGAGCACGACTTGAATGGGGAGGACACAGAGGAGACCCTCCACCCCAACGAGAACTACGACTCTGagctgcaggCGCTTCATGAGATGGTGCAGCAGAAGGTGGTTACGTTACTGAGCGACTCGGAGAACATCGTCAAGCAGTCTCTGATGGAGAATGGCATCACGCGGCTCTGCGTCTTCTTCGGCCGGCAGAAGGCCAACGACGTGCTCCTGTCCCACATGATCACTTTCCTGAACGACAAGAATGACTGGCACCTCCGGGGAGCCTTCTTCGACAGCATCGTGGGTGTGGCGGCGTACGTGGGCTGGCAGAGCTCATCCATCCTGAAGCCCCTCCTGCAGCAGGGTCTGAGTGATGCGGAGGAGTTTGTCATCTACAAGGCCCTCAACTCTCTCACCTGCATGTGCCAGCTGGGCCTGCTGCAGAAACCACACATCTACGAGTTTGTCAGTGACATCGCCCCATTCCTGTGCCACCCCAACCTGTGGATCCGCTACGGGGCGGTGGGCTTCATCACCGTGGTGGCCCAGCATCTCAACATAGCAGACGTCTACTGCAAACTGATGCCTCACCTCAACCCCTTCATCACCCAGCCCATCATACAGATTGATAAAGAGATAGTACTTCTGAGTGTGCTGAAGGAGCCAGTGAGCCGCTCCATCTTCGACTACTCCCTGCGCTCCAAAGACATCGCCAGCCTCTTCCGCCACCTGCTGCTGCGGCAGAAGAAGCGCAGTGGCTCACTCCCAGAATGCCCCATTCCGGAGGACCCCGCCATTGCCCAGCTGCTTAAGAAACTGCTCTCTCAGGGGATGACGGAAGCTGAAGAGGACAAGCTGCTAGCACTGAAGGACTTCATGCTCAAGTCCAACAAGGCTAAGGCCAACATGGGAGACCAGAGCCACCTGGGGGAGGCAGTCCAGAGCGGGGTCATTGACCTGGCCACGCTGGGCATCATGGGACGCCAGGTGGACCTGGTCAAACCTAAACAGGAGGCCGAGGACAAGAGAGACTTCATCGCCACAGCATCTGCCCGGAAACACACCAAACAGGACTCCAACATGAATGAAGAGTGGAAGAGCATGTTTGGCTCTCAGGAGTCAGCGGCTACGGCACCACAGCTCCCCACGGTTCCTGAAGGGGCGGGGACTCAGACCAGGAAGACCACAGCCTCCCTTGGTGTCCCTGTGGGGCAGTCTGCAGGCGCAGTCTCAACCTATCAGCGTCGTCTCAACACGTGCAAGGCGGAGCTTCAACATCTGGTGCAGCAGAAGAGGGAGCAGTGCAGCGCAGAGCGCATGGCCAAGCAGATGATGGAGAGCGCTGAATGGGAGAGTCGTCCGCCTCCGCCAGGGTGGCACCCTAAGGGTCTTCTAGTGGCCCACCTCCATGAGCACAAGTCTGCTGTCAACCGAATCCGTGTGTCAGATGAGCACTCCATCTTCGCCACGGCCTCCAACGACGGCACCGTCAAGGTCTGGGACAGCCAGAAGATGGAGGGCAAAACCACTACCACCAGGTCAGTGCTGACGTACTCCCGCATCGGGGGCCACGTGAAGACGTTGACCTTCTGTCAGGGGTCACACTACCTGGCTGCTGCCTCAGACAACGGTTCCATCCAGCTCCTGGCCATCGAGGCCAACAAGCCCCCCAAATCACCCAAAGTTAACCCCTTTCAGACCAGGTTCCTGGACCAGAaggatgacggctgcgtggtggACGTCCACCATTTTAATTCTGGAGCCCAGTCTGTGCTGGCCTACGCCACGGTGAACGGCTCCCTGGTGGGCTGGGACCTGCGCTCCAACTCCAACGCCTGGACCCTCCGCCACGACCTCCGCCTGGGCCTCATCACCTCCTTCACCGTGGACATGCACCAGTGCTGGCTCTGCCTGGGTACAAGCAACGGCACTATGGCATGCTGGGACATGCGGTTCCAGCTCCCCATCTCAAACCACTCCCACCCTACCCGAGCACGAATCAGACGGCTGCTCATGCACCCGCTTTACCAATCCTCCGTCATTGCTGCGGTCCAGGGCAACAATGAGGTATCCATGTGGGACATGGAGACTGGGGACAGGAAGTTCACGCTGTGGGCCagctctgctccccctctctcagagATGCAGCCGTCCCCCCACAGTGTCCATGGGATCTACTGCAGCCCTGCAGACGGGaaccccctcctcctcacagccgGCTCCGACATGAGAATCAGGTTCTGGGACTTGGCTTACCCAGAGAGGTCCTACATCGTGGCAGGTGGAGCCAATGAACCGCTGCACtgtccctcagtcctctacaGCCGCAAGATCATCGAGGGCACCGAGGTTGTACAGGAGATCCACAGCAAACAGAAGAGTGGAGCCACAGAAGACGCACCCCGCAGGGGCCCAGAGTCCCTCCCCGTGGGCCACCATGACATCATCACTGACATCGCCACTTTCCAGACCACACAGGGCTTCATCGTCACTTCGTCCAGAGACGGCATCGTCAAAGTCTGGAAATAAACTGCCCCTTTCAGGCCCTCGCACTCTcgctgacacacactcacacacccaacCAACCACACACACTAGTCCTCAACATCTTCACCCCAGAGTTTTGATCTATGTTGTAGACTTTTGTACATAGTATATTTTAAAGCTAATTAATATAAGAGAAGCTTCTGGAAATCCTGTCGCAAAATACGAGTAGATGTTAACCCTTTGTTTGTAATGACATTCACTGAAGTCACAATTATGCAATGCCTGATATCTGTTTATGTTAAACTGCTCAAGAAGTGTCAATTAAGTTTGGTATGATGAATGAACCCTTTATGAACTGCTATTATGAACTCTATAGTTTTTAGTGTTTATTGAGCACTATAGTCTTCTCTCATAGTCTCAAAGTTGTAACGTTAACAAACCAGGCCATGACCAGGACTGAAACCAACCCTTTGCATTAACAGTGTCCACATTCTCAAACCATAGCTGTTATCAATGACTGTCACAAGTTTAATTTGTATATCAAAACACAACAGCATATCCATTCAGGGCAGGATTAATGCAGGGGCTTACCGGGGCTGAAGCCCCTGGACCCAGGCCCGTAGGGGACCCAATAGGCAGCAAAAAATaaggaaatatatacagtattatacagtctgtaattacagtggggcaaaaaagtatttagtcagcca

Function

GO: NA

KEGG:

id description
K08333 PIK3R4, VPS15; phosphoinositide-3-kinase, regulatory subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132197 lncRNA upstream 81182 13943909 ~ 13946788 (+) False G115129
TU132229 lncRNA downstream 8013 14051656 ~ 14161240 (+) True G115155
TU132238 lncRNA downstream 17692 14061335 ~ 14171570 (+) True G115162
TU132248 lncRNA downstream 22381 14066024 ~ 14175893 (+) True G115170
TU132141 lncRNA downstream 64658 14108301 ~ 14119096 (+) True G115086
TU132289 lncRNA downstream 123021 14166664 ~ 14168403 (+) True G115198
XM_021620271.2 mRNA upstream 51409 13961020 ~ 13976561 (+) False LOC110535330
XM_036961964.1 mRNA upstream 51409 13961020 ~ 13976561 (+) False LOC110535330
XM_036961641.1 mRNA upstream 102080 13921452 ~ 13925890 (+) False LOC110535355
XM_036962031.1 mRNA upstream 107429 13915738 ~ 13920541 (+) True LOC118944102
XM_036938564.1 mRNA upstream 271940 13663839 ~ 13756030 (+) False LOC110520780
XM_036961858.1 mRNA downstream 43376 14087019 ~ 14135046 (+) False LOC110535435
XM_036961867.1 mRNA downstream 43376 14087019 ~ 14135046 (+) False LOC110535435
XM_036961871.1 mRNA downstream 43404 14087047 ~ 14135046 (+) False LOC110535435
XM_036961862.1 mRNA downstream 45560 14089203 ~ 14135046 (+) True LOC110535435
XM_036962057.1 mRNA downstream 65901 14109544 ~ 14230202 (+) False LOC110513267
TU132139 other upstream 65158 13961261 ~ 13962812 (+) True LOC110535330
TU131892 other upstream 318596 13701610 ~ 13709374 (+) False LOC110520780
TU131856 other upstream 404005 13621977 ~ 13623965 (+) True LOC110520769
TU131145 other upstream 1063040 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 1265143 12762232 ~ 12762827 (+) True G114263
TU132281 other downstream 98239 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 190871 14234514 ~ 14236854 (+) True G115189
TU132383 other downstream 362401 14406044 ~ 14407912 (+) True G115289
TU132480 other downstream 512812 14556455 ~ 14565113 (+) True sec61b
TU132987 other downstream 709980 14753623 ~ 14770903 (+) False stx17

Expression Profile