RNA id: TU132617


Basic Information

Item Value
RNA id TU132617
length 565
RNA type TUCP
GC content 0.58
exon number 8
gene id LOC110535427
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14046340 ~ 14080800 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGATGGTGGAGTTTGGGCGAGGATTTGGCTACAAGCAGCCGCTCAACATTGGCATGCACAATTTGGGAAACACCCTGTTGACACAAATAgaCACAGTGGCTGAGAGGGAGTGCTGCAATGTGATGTGTAAGTGCACCGGACATGAGGGTATCCGTGGCAACAGAGGACGCCCAGGGACAAAGAGTCAGCCAGGACTGAAAGGACACCCTGGCTTCCCTGGCGAGGAGGGGGGAATTGGCGAGAGAGGTCCACCAGGTCCCACTGGCCCACAGGGACTACAGGGCTGTTCTGGGAGGAGAGGCCTCAAGGGCTCAAGAGCCTACAGAGGGGACAGGGGTGATGATGGAGACCATGGCCTTGATGGGGTTGACGGTGAACAGGGTCTGATTGGAACAGCTGGagctgcaggagagagaggaaacccAGGAAGACCAGGCAACAGCGGCCTCATAGGAGAGCCAGGAGTGAAGGGGCAGCGTGGACTTAGAGGTGACCCTGGAGACTCTGGAGTGGACAGCATTGTCGCGGGTCCCAAAGGAGGAAGGGGAAACCCAGGACTACCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132615 lncRNA downstream 711 14055158 ~ 14056831 (-) False LOC110535427
TU132605 lncRNA downstream 24069 14031966 ~ 14033473 (-) True G115450
TU132598 lncRNA downstream 40478 14016834 ~ 14017064 (-) True G115443
TU132558 lncRNA downstream 137817 13919119 ~ 13919725 (-) True G115414
TU132080 lncRNA downstream 251664 13805665 ~ 13805878 (-) True G115041
TU132651 lncRNA upstream 48549 14109507 ~ 14113517 (-) False G115484
TU132654 lncRNA upstream 48549 14109507 ~ 14144417 (-) False G115484
TU132655 lncRNA upstream 48921 14109879 ~ 14130117 (-) True G115484
TU132666 lncRNA upstream 64444 14125402 ~ 14223694 (-) True G115490
TU132667 lncRNA upstream 64659 14125617 ~ 14126839 (-) True G115491
XM_036961932.1 mRNA downstream 29664 13981286 ~ 14027878 (-) True LOC110534084
XM_036961937.1 mRNA downstream 29950 13981286 ~ 14027592 (-) False LOC110534084
XM_036961933.1 mRNA downstream 39744 13981286 ~ 14017798 (-) False LOC110534084
XM_036961928.1 mRNA downstream 39745 13981286 ~ 14017797 (-) False LOC110534084
XM_021620220.2 mRNA downstream 97288 13957030 ~ 13960254 (-) True LOC110535305
XM_036961802.1 mRNA upstream 94708 14155666 ~ 14183944 (-) False LOC110535417
XM_036961800.1 mRNA upstream 94708 14155666 ~ 14187260 (-) False LOC110535417
XM_036961795.1 mRNA upstream 94708 14155666 ~ 14187261 (-) True LOC110535417
LOC110513641 mRNA upstream 229258 14290216 ~ 14291275 (-) True LOC110513641
XM_021618058.2 mRNA upstream 271793 14332751 ~ 14335014 (-) True LOC110533643
TU132581 other downstream 80981 13962185 ~ 13976561 (-) True G115431
TU131953 other downstream 395951 13653902 ~ 13661591 (-) True LOC118937748
TU131946 other downstream 474936 13574535 ~ 13582606 (-) True G114928
TU131917 other downstream 557259 13494448 ~ 13500283 (-) True LOC110534058
TU131789 other downstream 725036 13330748 ~ 13332506 (-) False G114812
TU132669 other upstream 162901 14223859 ~ 14224919 (-) True G115492
TU132791 other upstream 348808 14409766 ~ 14412176 (-) True LOC110535605
TU132828 other upstream 465110 14526068 ~ 14526520 (-) True tmem245
TU132893 other upstream 494301 14555259 ~ 14556168 (-) True alg2
TU132822 other upstream 502845 14563803 ~ 14565399 (-) False G115601

Expression Profile