RNA id: XM_036961867.1


Basic Information

Item Value
RNA id XM_036961867.1
length 3639
RNA type mRNA
GC content 0.55
exon number 34
gene id LOC110535435
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14087019 ~ 14135046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGACACTTTGCAGGTGAGCCCCACCCTCTCCTGTTGCACAGACTGCTAGCAGAGAGAGCAGCAAACACACCTGGACAACACAAACCTGTGGGATATTCACATTTTAACACATATGCAAAAAAGAGAAAGGTTCTCCTGAAGTCCCTTCTCCCCTGCGTCTCCAGAAGGCCTCTCCCATGATGAAGCTGACCGGTGCTATTCTACTTCTCTATTTGGTGTCGCTAGTCCACGGTGCCTGCTCTCTCAatgggaggaacagaggagaccTCTATGACTGCCCAGCGGACGTGTACATTGTTCTGGACACCTCAGAGAGTGTGGCACTGAGGGCCAAGCCCTACGGCTCCTTTGTTGATCAGATCAAGCAGTTTGCCCTGGACTTTGTGGACCAGCTCAATACTAGATACTACAGCTGTGAGCGTAACCTGACGTGGAGTGTGGGAGTGCTGCACTACAGTGATGAGGTAAAGGTGATGAGGGAGTTGACCAGCACCAAGGAGGCCCAAGGAAGAGCTCAGCTGAAGAGAGCTATACAGGACATTCGCTACATCGGCAAGGGAACCCACACCGACTGTGCCATCTCCGTAGCAACAGGGCAGCTGATGACAGGctctcctctccatGGCAACAAGTACATGGTGGTGGTGACAGACGGCCACCCGCTGGACGGCTATAAGGAGCCGTGTGGCGGGGTGGCACACACCGTGTCTGAGGCCAGAGCCATGAACATTAACATCTTCAGCGTGGCTATCACTCCACATCACCTGgacaACAGACTTGGTTCCATAGCAACAGATGTacaacacacccataacatgtcTGCTACTAGTGAGGACCTGCAGGTTGTTAGGAACACCATCAGCTCCATAGTGTCTACCATGTACAAGGATTCTGAATCTGTGTGCTGTTCGTTCGAGTGCAAGGCTCCCCTGGGATCTCAAGGCCCTGCTGGTGCAGGAGGGGGCGCGGGAACTCCAGGACGTCAGGGGGTTGCCGGGAGACCGGGAAGTTTGGGAGCAAAGGGGAATGCAGGTGACCAGGGGCcccaaggacacagaggagagaagGGTGACCGTGGTCTTACTGGTGACAGAGGTCCAAGAGGACCGTCTGGACAAAAGGGTGAGAAAGGAGCGGATGGAGTGGACGGGAAGGATGGCCTTGTGgggGACTTTGGGGTTATGGGCCTGTCTGGTTGTAGAGGAGACGAGGGGGCAGAGGGGGAGCCAGGTCCTCTGGGGCAGAAAGGAGATGAAGGATCTTATGGATTACCTGGACAAAAGggagagatgggaacaCCTGGGGAGCCAGGGGTTCCTGGAGTGTCTGGAGCCAACGGAGCCAAGGGGGAGCCTGGACCAATCGGAGGACCTGGAAATAAGGGTGACCAAGGAGACGAAGGGGACTTTGGACCGTCTGGAGCGCCAGgcacagagggtgtagggggagagaggggactaAGAGGTGCTCCAGGAATAAGAGGTGGTCAAGGGGAGACGGGTGACACAGGCTCTGCTGGAGCACAGGGTCATGAAGGTCAGGCTGGAGACGTGGGTTCACAGGGTCTGGGTGGAGTGTCTGGGCTCAAAGGGTACAGAGGAGAGCCGGGACCTTACGGGCCTGCGGGTGTTAAGGGCCCCAGGGGGCCTCCAGGAGCACCAGGAGATGCAGGGCCCATTGGGAAAAGGGGTGATGCTGGAACACAGGGAGAAGGCCAACCTGGATATCCAGGGTTCCAGGGATACCCTGGTCTGAGAGGACCTGCAGGTttaaagggcATCAGGGGATTCACAGGGCTGAAGGGTGATGTCGGCCTGCCAGGTGATCGCGGTGATGATAACGACCAGCCAGGTCGGGGAGGACCCCAGGGGCCAAAAGGATACCCTGGTCTCACAGGAGAGAATGGATCACCAGGCCCAGTGGGCAATCCTGGGGCAGACGAATGTGAGATCCTGGAGGTCATTCAGAAACTCTGCTtgtgtgagtgtggtcCGGTGAAGCTACTCTTTGTACTGGACAGTTCAGAGAGTGTTGGGCTGCAGAACTTCACCCTGGAAAAAGAGTTTATAATTCGAATCATCAACAAGATTACCAAGTTCAGCAAAGACAAGAAGGAGCTAGGATCACGAGTGGGTGTAGTTCAGTACAGCCATGACGGCACCCAGGAGCTGGTATCTATGGAGGACCCCAAGATCACCACAGTAGCACAGCTCAAAAGCTCGGTGAGAAACATGCGCTGGATTGCCGGTGGTACGTACACGGGAGAGGCGCTGGATTTCGCCCGGCAGGCATTCGGCAGCTCCCAGCTGGACCGAAAGGTGGCCATAGTCTTGACAGACGGACGGTCGGACACCCGCCGGGACGCCAAACCGCTGTCCTCCCTCTGCTCTGTGCCCAATATAAGGGTGGTGGGCATTGGCATAGGTGACATCTTCAGACGGGCGTCCTACGCTGCCATGCTGGAGGAGATCACCTGTCTGGGCACAGCCTCACCTGGACTCTACCTGAAGATTACAGACCACGTGCAACTGCTGGAGGACTCCTTGTTCAACAATGTTACTGGCTATATCTGCCAAGATAAGAAATGTCCTGATTACACCTGTCCAGCCAACTTCCAGGAAGCTACAGACATAGTCTTCATGTTGGACGGCTCCTCCAGTGTGGGCCAGGCCAACTTCTACAGAGCCAGAGAGTTTGTTGAGAACATGGCCGCCAGGCTGCTGTCACAGGACCGGGGAGGGCTGCTCCGCCTGTCCGTCATGCAGTACAGCGATGGGCAGCAGCAGAGAGTGGAGGTGCCCTTCACTGCTAGTGTTGAGGATGTGCTAACGGGGCTAGCAGCTACGCTCTACATGGACGGGGCCACCGACTTACCGGCTGCCCTGGCCTTCCTGACCTCCACCCTCCAGAGGGAGGGCCGCTCTGCTGTCCCCAGGAAAGTGGTGGTATTCACAGACGGCAGGTCTGTGGCCTCTGCCCGGGCTGCTATCCCCAGAGCCGCCGCCGCCGCTCTGGCAGAGAACACACAGCTGCTGGCCGTCACTGTGGGCGAGGGCTTTGACGAGGCGGGCGTGTGCCAGCTGGTGACGGGACAGGCGAACGGGTTTGATTACCGCGTCGTGGATAGTCGTGTCCACCGAGTGGCGCTGTACAGTGACCTGGCCAGACGGGTGGTCATGCAGAGCCTGGCTAGAAAGCTCTCTAAAGCTCTCTGAAGCTCTCCAAAGCTCTCAGAAGTTCTCTAAAGCTCTCTAAAGCTTTCTGAAGCTCTGTAAAGCCCTCTGAAGCCCTGTAAAGCTCTCTAAGGCTCTCCGAAGCTCTCTGAAGCTCTGTAAAGCTCTCTGGAGCCCTCTAACGCTCCTAAAGACCTCCCTACTACTGAACTGTCTATGAATTGTCCTGTTGTGCCATGTATTAAGAAATTAGATAGATATGGTGCACATTTTATACTTTTGTGTTTTCCTTATGCCTTTGAGGGCCTCCTGCTTTTCATGTGAAATAAAATGAATATGTTTGTCATAAGAAGCACTTGGGTAGATTAATAAACGTTACGCTGTAAGTTTGGTGATAAGATGAACAGTTTTCTTTTGCTCAAATTTTCTGGAGGTCTTGACAAATAAAATATTGGACAAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132227 lncRNA upstream 49272 14037240 ~ 14037747 (+) True G115153
TU132198 lncRNA upstream 140231 13944714 ~ 13946788 (+) True G115129
TU132194 lncRNA upstream 141662 13944447 ~ 13945357 (+) False G115129
TU132289 lncRNA downstream 31618 14166664 ~ 14168403 (+) True G115198
TU132307 lncRNA downstream 64207 14199253 ~ 14202942 (+) True G115216
TU132344 lncRNA downstream 157713 14292759 ~ 14297388 (+) True G115252
TU132136 lncRNA downstream 182502 14317548 ~ 14318010 (+) True G115081
TU132354 lncRNA downstream 200111 14335157 ~ 14335397 (+) True G115262
XM_036961829.1 mRNA upstream 43376 14027970 ~ 14043643 (+) True LOC110534090
XM_036961817.1 mRNA upstream 44047 14027966 ~ 14042972 (+) False LOC110534090
XM_036962053.1 mRNA downstream 77368 14212414 ~ 14230202 (+) False LOC110513267
XM_036962061.1 mRNA downstream 85380 14220426 ~ 14230202 (+) True LOC110513267
XM_036961838.1 mRNA downstream 105186 14240232 ~ 14316219 (+) False LOC110535510
XM_036961851.1 mRNA downstream 110272 14245318 ~ 14314631 (+) False LOC110535510
XM_036961843.1 mRNA downstream 127004 14262050 ~ 14314631 (+) True LOC110535510
TU132139 other upstream 124207 13961261 ~ 13962812 (+) True LOC110535330
TU131892 other upstream 377645 13701610 ~ 13709374 (+) False LOC110520780
TU131856 other upstream 463054 13621977 ~ 13623965 (+) True LOC110520769
TU131145 other upstream 1122089 12949360 ~ 12964930 (+) True G114323
TU131068 other upstream 1324192 12762232 ~ 12762827 (+) True G114263
TU132281 other downstream 6836 14141882 ~ 14144267 (+) True G115190
TU132280 other downstream 99468 14234514 ~ 14236854 (+) True G115189
TU132383 other downstream 270998 14406044 ~ 14407912 (+) True G115289
TU132480 other downstream 421409 14556455 ~ 14565113 (+) True sec61b
TU132987 other downstream 618577 14753623 ~ 14770903 (+) False stx17

Expression Profile