RNA id: XM_036961795.1


Basic Information

Item Value
RNA id XM_036961795.1
length 9188
RNA type mRNA
GC content 0.52
exon number 39
gene id LOC110535417
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14155666 ~ 14187261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTTTGCCTAACCATTCGATGATTCGGGGCGGGGTGTGAGTAGTGGCCGGCCGCACCAATTTCTGCAGAACAAGATTGGGCTTTGGGTTCTATAAGGGAATGGGATTCCTGCCTGCGCGCACCAGATAGTGCTTCAGCCACATTTTGATCTGTCCATGTTTGTGTTCaaggagagagactagagaaacgTTCCAACATGGAGGGGACACAGGGCCTCCTGGCCATCTTCACCATAGCAACATGTTTTCTGGTTAACGGAGCACAAAAAACAGTCTGCAAGGAAGAGGCCGTGGCCGACATCGTCTTCCTAGTGGATGGTTCATGGAGCATCGGCTCAGAGAACTTCAAACAGATTCGGCAGTTCTTGTACACGCTGGTTAACAGCTTTGAAGTGGCCCCCGACCAGGTGCGCATCGGTTTGGTCCAGTACAGCAACACACCACGCACTGAGTTCCTCCTCAACACCTTCCAGGACAAACAGGACATCCTGCAGTACATTACAAACCTGCGTTATATGGGTGGTGAAACCAACACGGGCCTGGGCCTGGACTTCCTGCTGAACGAGCTCTTTGTTGACCGCGCAGGGAGCCGGGTGAATGAGAACGTGCCCCAGATCGGTGTGGTGATCACTGACGGTGAATCAATGGACAATGTGGGGCTGCATGCCCTTAAGCTGAAGAAGCAGGGTGTCACGCTGTACGCCATCGGGATCAAAGAAGCAGACGAAGATCAGCTGAAGGAGATTGCCACTACACCTCACAACCAGCATGTGTACAGCGTGTCAGACTTTGCTGCGCTGCAGGGGATCTCCCAGAGCCTCATCCAGGTGCTATGTACTACCGTAGATGAGGCAAAGAGACCAATATCCAAAGTGGTACAAGAGTGCCTCAACGCCACAGTGGCTGACATTGTGTTCCTTGTGGATGGCTCCACCAGCATCAGCCCTACAAACTTCCAGGAGGTTCGGAGGTTTCTCCACAGCTTCATCGAGGGTCTGGATATTGGAGCGGACAAGGTTCGCATAGGACTGGCCCAGTTCAGTAATGAGATCCAGAAGCaattccatttgggggaacataCGGACCAAAGGGCCCTACTGGAGCAAGTGGACAGGCTTCCACAGCTCGGGGGAGGCACAGCCACCGGCAAAGCCATTACTGTCCTTCGGGAAGAGTTTTTCACCAAGGCAAACGGTAGCCGCGCTGATCAGAGGGTGCCTCAGATTGCTGTGGTGCTCACCGACGGGGCGTCTGCGGACAAGGTAACGCTGCCAGCCAAGGCGCTAAGGCAGCAAGGGGTCATTGTGTTTGCTATTGGAGTTGGGGCAGCCAACACCAACGAGCTGAAGGATATCGCTAACAGGCCCCATGAGCGTTTCCTGGTCAACATAGAAAGTTTCCAGGCCCTACAAACACTTTCTCAGGGTCTGTTGCAGACTGTCTGTGTCTCCATGGAGAACCAGAGGATGGCTCTAATCCCAAAGTTCTCTGATATCTTCTTCCTGGTGGACAGCAATATGATGCAGGCAGACTTCCAGCTGGTCAGAACCCTTCTGATGCGACTGGTCAACCAACTCAACCCGAGCACTAAAACGATGCGCCTGGGTCTGGCCCAGTTTGCCCAGGACACCAAGGTGGAGTTCTTACTGAACACCCACAACACCAAGGAAGAGTACTTGGCAGCTCTTAGGAAATTCAGGCTGCCGCTGCGTCCCAACAGGTCTCGTCACCTGGGCGATGCCCTGGAATACGCCCGTGCACACTTCTTCACTACAGCGTCTGGTGGCCGTAATGAACAAGGCTACCGGCAGTTTCTAGTCACAGTGACAGGGGGGGATTCGAAGGATAACGTGATGAAGGTGGCACGTACTATCAAATCTGAAGGGACAACCATTGTGTCTATCGGGTTGGGTGAATCTACACTTCCAGAGCTAAAGTTAATGGCCACCTCGCCATTCTTTTACCAGACTACATCCATCACCTCTGTGCTAAAGACTGTCTTTGAGACTGAAGAGGTGGTCACTGTGACTGACGATTGCAGTGAAGCTTCACTGGCTGACATTGTGTTTATAGTTGATGAGTCTTCGAGCAATAGAACTGCAAACTTCCAGCTGGTTCGTGGATTCATCCACAAGATAGTAGACGGCCTAGATATAGACTTCAACAGGGTGAGGGTGGGCATCGTCCTCTATAGCAACAAGGCCTCGGCCCAGGTCTACCTCAACTCCTTCCAAGAAAAAACAAATATCCTTCAGTTCATCAAGATCCTGCCCTACCGTCGCGGTCTCACATACACTGGCGAGGCCCTGGAGTATGCCAGGGAGAAGATGTTTATCAAGGAGAGGGGCAGCCGGAAAGAACAGGGGGTGCAGCAGGTGGCGATAGTCATCACCGGAAAGTCCCAGGACAACGTAACTTCTCATGCCGCTGCACTGCGCAGAGCTGGCGTCACTGTCTATGCAGTGGGGATCAAGGATGCTGACGAGAACGAGCTGAGACAGATCGCTTCAGATCCCCCTAACAAGCACGTATTGCATGTGGACAGCTTTgccaagctcaagaccctggagAAGAGCCTGAAGAAGAGTGTGTGCTACAACATCCTTAAAAAAGCAGTCAAAGACAACGCAAGGACATACACTGCCAAGCAAAGCTGTTTGCAGACAGATGAAGCAGACATGTTCTTCCTGATCGACCACTCAGGGAGTATTGAATATCCAGACTTTGCTGACATGAAGACATTCATTAACAAATTCATAAACACATTCCACATCGGACCGCATCATGTCCGCGTGGGTGTGGTAAAGTTCTCTGATACACCAGCTCTTGAGTTTGATCTGACAACCTACCCTGACAAACCTTCAGTGGAGAAAGCAGTGGATGGTATCATCCAACTTGGAGGCGGGACAAAGACCGGATTAGCGCTGAACTCTATGGGTCCGCACTTTGATCGGGCTAAGGCCACCCGAAGTCACAAAGTTCGCGAGTACCTCATTGTCATCACAGACGGAGAGTCTGAAGACAACGTGAAGGATCAAGCAGCAAAGCTGAGGGCGCAGGGCATCACCATATATGCCATTGGGGTGAATCTAGCTAACGATACACAGCTGCTGGAGATTGCTGGCAGCCAAGAGAAGAAGTTCTTTGTCAACAACTTTGACGCTCTGAAACCAATAAAAAATGACATCATCACAGATATCTGCTCCCCTGATATTTGCAACGACATGAAGGGGGACGTCCTCTTCTTGATTGACAGCTCAGGTAGCATTAACAACCCAGACTTCCAGAAGATGAAGGTCTTCATGCAATCCATCATCAACAAATCTGACATAGGCCTGGATAAAGTGCACGTGGGCATCATACAGTTCAGCACCAGCCAACAGGTGATCTTCCCTCTCAACAAGCATAACGATAAGGAAGGCATGTTGCAGGATTTACAAACGATGCAACAGATAGGCGGGGGCACACACACCGGCAGAGCCCTGTCCTACACCTCACAGTTCTTTGACCCACCGAAAGGAGGGCGCACTAACGTGAAGCAGTTCCTGATTGTCGTAACCGATGGTGAGGCGCAGGATGAGGTCATGTCTCCTGCCAAGAAACTTCAAGACAAGGGTGTGATCATCTACGCTATTGGGGTGGTCAATGCCAACAATACACAATTACTGGAGATCAGTGGCGCACAGGAGAGGGTCTACTCCGAGAGGGACTTTGATGCACTCAAGGCTTTGGATAGCCAACTGGCATTGGCAATCTGTGATCCGGAGAGAGAGTGTGTGAGGACGGAGATCGCAGACATCATTTTCTTGGTGGACGGCTCCACCAGCATCAGCTCAGATAATTTTGACATAATGAAAAACTTCATGATGTCCGTGGTCAATGAAACCTCTGTTGGGGAGAAGCAGACACGCTATGGTCTGATTGTCTTTTCAGACAACCCCGAGTCTAAATTCACACTCAACGAATACAAATCTAAGCGAGACGTCAATAGTGCCATCACAAAGCTTAGAGAGCCCAGTGGAGACACTTACACTGGAAAGGCACTCAAGTATTCCTTGGGTTATTTTGGTGCACAGTACGGCGGGCGAAAGGCCCTAAATGTTCCCCAGTGGTTGATGGTGATCACAGATGGTGAGGCTACTGACCCCTATAGCCTAGCTGGGCCAGCCAAGGAGCTACGGGACAATGGGATCATAGTCTATAGCATCGGAGTGGTTGGAGCAAATAAGCAAGAGCTTGAGCTCATGGCAGGGGACACGAATAAGGTTTTCTTTGTGGATGACTTCCATAAACTAGACACACTGCACAAAAATATTTCCTTTGAATTCTGCCAAACCAGCAAACCAGtCTGTGAAAAAACGCAGGGGGATCTGGTCCTGTTAATTGACAGCTCAGGGAGCATCAGCACCACCGACTTCACTATCATGAAGAAGTTTGCCACAGACCTTGTTTCCAGCTTCAACATTGCAGAGCAGTCCTTCCGGGTGGGAGTCGCCCAGTTCAGCAGTGATCCTAAAAAGGAGTTCTTCTTGAATGAGTATTACACAGAAGCAGAGGTGAACAACCAGATAAACAATATGATGCAGATTAGGTACACAACGAACATCGGAAAGGCCCTGAACTACGTCCGTAAAGAGTACTTCCAACCAGCTAGAGGGAGCCGTATCAATGCCAAGGTCTCTCAGAACCTGGTTGTAATCACTGACGGACGTTCagatgatgatgttgttgatgcAGCAGAGAAGCTCAAGGCCATGAACATTGAGGTGTTTGCCATCGGTATCGGGAAAGACCACAAACCTGTTGAGCTTGGGCAAATCACTCTCAACCCAGAAAGGGTCTTCTCTGTGCAGGACTTTGCCAGCCTGGACAAGATCAAGAAGAAGGTGGTGGATACTATATGCTCCTCCAAGGTACCAGACACTCAAGCGGGCTGCACCATAGACATCGCCATGGGGTTCGATATTACACGCAGGGCCACCGCCCAGGGGCTCTTCGATGGCCAAGCCCAGCTACAGGCCTTCCTGCCACAGATCATCCGCTATGTGTCCAACCTGAAGGGCCTGTGCTGCGTGGCGGGAGATGGTTCCATTGAGACTAACATTGGCTTCCGCGTGGTGGAGCAGGACGGAAAGGTTCTCTACGACTACAACTTCGAGAAGTACGACGAGAAAATTGTGGAGAAGGTTATGGCCCTGCAGACCACCCAGACAACATACTTCAACTCCTTCCTCCTGCGCTCCTTCAGTGATAAGTTCCAGAAATCTAACGCTGGCGTGAAGGTGCTGGTGATCTTCTCAGACGGACTCGATGATGACGTGGTGAAACTGGAGCAAGAGTCGGAACTTCTCCGCACTAAAGGTATCAACGCCCTGCTTACAGTCGCCCTAGAAGGTGTCCAAAATGCCAACCTTCTTCAGATGGTGGAGTTTGGGCGAGGATTTGGCTACAAGCAGCCGCTCAACATTGGCATGCACAATTTGGGAAACACCCTGTTGACACAAATAGACACAGTGGCTGAGAGGGAGTGCTGCAATGTGATGTGTAAGTGCACCGGACATGAGGGTATCCGTGGCAACAGAGGACGCCCAGGGACAAAGAGTCAGCCAGGACTGAAAGGACACCCTGGCTTCCCTGGCGAGGAGGGGGGAATTGGCGAGAGAGGTCCACCAGGTCCCACTGGCCCACAGGGACTACAGGGCTGTTCTGGGAGGAGAGGCCTCAAGGGCTCAAGAGCCTACAGAGGGGACAGGGGTGATGACGGAGACCATGGCCTTGATGGGGTTGATGGTGAACAGGGTCTGATTGGAACAGCTGGagctgcaggagagagaggaaacccAGGAAGACCAGGCAACAGCGGCCTCATAGGAGAGCCAGGAGTGAAGGGGCAGCGTGGACTTAGAGGTGACCCTGGAGACTCTGGAGTGGACAGCATTGTCGCGGGTCCCAAAGGAGGAAGGGGAAACCCAGGACTACCGGGAGACCCAGGAGAAGAGGGCAGTCGAGCAGAAAGTGGAATCGTCGGAAACCCAGGTCCTCAAGGAAGAAGAGGTCTCCCTGGTCCAAATggaaCACCAGGGGATCCAGGAGTTGTAGGCCTCCAAGGAATTCCTGGCCCTTCTGGACCACAGGGTATAAGAGGAGACTTGGGCCAGCCTGGACCCAGGGGCCTGCAGGGTTTACCTGGACCTCAGGGCACACCTGGAACTATGGGTGGCAAAGGTTCAACAGGAAGACGAGGGATGAATGGACAGAAGGGCCAACCTGGGGACCTCGGGGTCAACGGAGCCCTTGGAACACTTGGGCCAAGAGGGATGCCGGGTCTTGATGGCAGTGACGGCCATGGGCCTCCCGGACCCCAGGGAATGAAGGGAGAGCCTGGTTTCCATGGTTACCCTGGATTACAGGGTGAAAGTGGTGATTTTGGAGTCAAAGGAGGTCCAGGCCCCAAAGGAAACCGAGGCAGAGGGGGGAACTCGGGCAGATCGGGTGAGTCAGGAGATCCCGGATCCATTGGACCACCGGGACACACTGGCTCTAGAGGCAGACCAGGAGAGAGAgccatgtctGAATGCCAGCTGACCACCTATATCCGTGATAACTGTGCATGCTCTCAAGGCCAGGCAGCGTGCCCAGCCTACCCCACAGAGCTGGTCTTTGCTCTGGATATGTCACAGGATGTGGAGCCTGCCACGTTTGAGAGGATGCACTCCGCTCTCCTCTCCATATTGGATGACGTTGCCATCGCCGAGAGCAACTGCCCGACGGGTGCACGTGTTGCCGTGGTATCCTATAGTGCCAACACCAAGTACCTGATCCGATTCCAGGACTACCAACGCAAGCCGGAGTTGTTGGAGGCCATCCAAAACATTGCACTGGAACGAACGTCCAACCAGCGCCATCTTGGGGAGGCCATGCGCTTTGTGGGGCGCCATGTCTTCAAGCGAACCCGTAAAGCGTTGACGATGAGGAAGGTGGCAGTGTTCTTCACCAACGGGCCCTCTGTGGACAGCGCTGCCATCGTCACGGCCGCCATGGAGTTCAAGGCCTTGAACATCGCTCCTGCTGTCATCGCACTGAGGAACTCCCCCGATGTTCAACGGGCTTTTGAGGCTGATGACACGGGCAGCTTCATCCTTGTTCGGCTGGTGGATAGGTCACAGGACCAAAATGCTGTGCTGACAAGAATAAAAAATTGCGTCATCTGCTACGACCACTGTAAACCAGCCCAGGGGTGTGATTTTACTGACGCTCAGCGGCCCCTGGTGGTGGATATGGACCTGACCCTGGTGGTGGACGGTTCAAGGGAGATCCGGGCCGATCAGTACGCTGGCGTCCAGGAGCTTCTGGGCTCAGTGGTGAAGCAGGTAGCCTGGAGCCCCAAACCCAGCGTGGCTGACGGCCGGGCCAGAGTGGCCCTTCTCCAGACCAGTGGTTCTCTGCTCCCCCAGACTTCCCAGGCCGTCAAGGTAGAGTTTGACCTGCAGAAGTACCACAACCACATTGGTCTACAGAGACACCTGAGGAGCATGCAGCAGCAGGGAGGAGTGTCGTCTCTGGGGCAGACCCTGGAGTACGCTCTGAGCAAGGTGTTCCTCAAGGCCACCAGGCCCAGGAAGAGTAGAGTGGTGCTGGCTGTGGTGGGGGCCGAGACAGCCCACTGGGACCAGGCCAAGCTGGCCTACATTTCCCAGAAGGCCAAGTGTCAGGGCGTTTCCCTGTTTGTGATCGCGGTGGGCGACCATTACAACAGCACCCAGGTGGAGGAGTTGGCGAGCACGCCGTCAGAGCAGCACCTGCTCCATCTGTGGCACGtgaaggagtgggagagaggctaCGCACAGCGCTTCTTCAGAGCCTTCCTCAGGGTCCTCAGTAAGGGAGGGAACAGCTACCCTCCTGCCCATCTCAAACTCAAGTGTGATCTGATGCTGGGACAGGAACACGGACAGGGacaaggacaggcagagtgggatgtgtggaaagaggaagaggagtacACAGATGAGGAGGAGTTCCTGGAGCACACTGGTGTATTTCCGACTCAGATAGCTCTTGACCAGGTTGACACTATACATGCCTTCTCCAGGGGAGATGGAGCCACTTCACCCCCCCGGCCACAGCCAAACTCTAATGATCACACAACCCTCCTGAGGACAGAGGAAAGTACAGTTCTTAACCAGGaTGCATGTTTCTTCAAACAGGACAAGGGAGGTTGTGAGAACTACACTCTGAAGTGGTACTTTGACACGACACAGAGCGAGTGCTCCCGTTTCTGGTATGGCGGCTGTGGCGGCAACGCTAACCGTTTCGAGACGCAGGAGACTTGTGAAGGCCTCTGTCTGAGGAGGAACTCCACACATGTAAAACCCTGATTAGAGTGAATAGAAGAAGATCACGCCAGAAAACCAGCCAAACAAATGTCTCATTCAAGGTGTAAACATCAAaaacaacactgtctgtgtaAATAACTCTGGCCCTTATCTTTTAGCATTTAGTTGTTCTCCTTTTGGGTACAAATGGAAATTACTGAAACAGAAGTATGAATATTTCTCTCTTTTATTCAAGTCTGTTCAAGCAGACCTAAGTAACGGATCTGACTCTCATGCAGTCATGCAACAATGCATAAGGGCACTGCTGCTTTTGTGAGAATGACTTTAAAGCAATGAAATAACCTGTGTTGTCTCTTGTGGCTATTTTCCATCATCACAGATCAACAGCTACCAAACCAAGTCAAGCACCAGGCAATGCACTGTTAACTTGGATGTTAACCGTACATGTAAATTCAGGCTGTATGTCATCCGCTCAGTGTTTTGTAAATAGGATTTGTtgcactgtgtgtctgtgtttcctcTAACTTGACcattttgtttacataccctacatctcatatgtatatactgtactcgataccatctactccatcttgcctatgccgctctgtaccatcactcattcatatatctttatctacatattctttatctctttacacttgtgtgtgtgtataaggtagtagttttggaattgttaggttagattactcattggttatttctgcattgtcagaactagaagcaaaagcatttcgctacactctcattaacatctgctaaccatgtgtatgtgacaaatacatttgatttggtgcTACATGTTGAAAATAAAACTCCACAAATTCCCTA

Function

GO: NA

KEGG:

id description
K06238 COL6A; collagen type VI alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132654 lncRNA downstream 11249 14109507 ~ 14144417 (-) False G115484
TU132655 lncRNA downstream 25549 14109879 ~ 14130117 (-) True G115484
TU132672 lncRNA downstream 28482 14126196 ~ 14127184 (-) False G115492
TU132667 lncRNA downstream 28827 14125617 ~ 14126839 (-) True G115491
TU132624 lncRNA downstream 36495 14037361 ~ 14119171 (-) True G115460
TU132747 lncRNA upstream 112910 14300171 ~ 14307142 (-) True G115557
TU132752 lncRNA upstream 136819 14324080 ~ 14324335 (-) True G115561
TU132756 lncRNA upstream 149733 14336994 ~ 14337288 (-) True G115564
TU132759 lncRNA upstream 152887 14340148 ~ 14340542 (-) True G115567
TU132776 lncRNA upstream 153386 14340647 ~ 14345292 (-) True G115575
XM_036961808.1 mRNA downstream 74866 14046340 ~ 14080800 (-) False LOC110535427
XM_036961811.1 mRNA downstream 74866 14046340 ~ 14080800 (-) False LOC110535427
XM_036961932.1 mRNA downstream 127788 13981286 ~ 14027878 (-) True LOC110534084
XM_036961937.1 mRNA downstream 128074 13981286 ~ 14027592 (-) False LOC110534084
XM_036961933.1 mRNA downstream 137868 13981286 ~ 14017798 (-) False LOC110534084
LOC110513641 mRNA upstream 102955 14290216 ~ 14291275 (-) True LOC110513641
XM_021618058.2 mRNA upstream 145490 14332751 ~ 14335014 (-) True LOC110533643
XM_036962190.1 mRNA upstream 178468 14365729 ~ 14374923 (-) True LOC110490474
XM_036962023.1 mRNA upstream 199472 14386733 ~ 14398249 (-) False LOC110490494
XM_036962024.1 mRNA upstream 199472 14386733 ~ 14398249 (-) False LOC110490494
TU132617 other downstream 94708 14057542 ~ 14060958 (-) True LOC110535427
TU132581 other downstream 179105 13962185 ~ 13976561 (-) True G115431
TU131953 other downstream 494075 13653902 ~ 13661591 (-) True LOC118937748
TU131946 other downstream 573060 13574535 ~ 13582606 (-) True G114928
TU131917 other downstream 655383 13494448 ~ 13500283 (-) True LOC110534058
TU132669 other upstream 36598 14223859 ~ 14224919 (-) True G115492
TU132791 other upstream 222505 14409766 ~ 14412176 (-) True LOC110535605
TU132828 other upstream 338807 14526068 ~ 14526520 (-) True tmem245
TU132893 other upstream 367998 14555259 ~ 14556168 (-) True alg2
TU132822 other upstream 376542 14563803 ~ 14565399 (-) False G115601

Expression Profile