RNA id: XM_036961843.1


Basic Information

Item Value
RNA id XM_036961843.1
length 3663
RNA type mRNA
GC content 0.57
exon number 25
gene id LOC110535510
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14240232 ~ 14316219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACACCCACCCAGACTGTCTGCTCAGACCTGTAGGACTATTTGGGCACCCACCCAGACTGTCTGCTCCAACCACCTATTCACCATCCAGTGATTACAGCAGGACTTGGGTGCTCTTTAGTTGGCGGAGGTTCCGCCACTCTGCGGAGTCTGCCAGCCATGGACTTCTGGGGAGATATTGTCAATTTGAAGACCACCACAGCAGCCCAAGCTCcatgtgtgGGGAACGATGATGAGGCGGTTGTGGACCTGGGGAAGACTAGCTCCACCATTCACACCAACTTTGAGAAAGAGGAGCTAGAGAGTCACAGAGCGGTCTATGTGGGTGTCCATGTTCCTCTGGGCAGAGAGACCAAACGGAGGCACCACCGCAGCCACCGCGGCCACAGACACCACCGCAAGAGGAGAGACCGCTCGGACCATGAAGATGGACGAGAGTCTCCTTCCTATGACACCCCGTCCCAGCGGGTCCAGTTCATCCTGGGGAcagaggatgatgatgaagagcACATGCCCCACGACCTGTTCACTGAGCTGGACGAGCTGTTCTTCCGGGACGGACACGTCTACGAGTGGAGGGAGACAGCCAGGTGGTTAAAGTTTGAGGAAGAcgtggaggatggaggggagcGTTGGAGTAAGCCCTACGTAGCCACGCTGTCTCTCCACAGCCTCTTCGAGCTCCGCAGCTGCATCCTCAACGGCACTGTCATGTTGGACATGAGAGCTAACACCATTGAGGAGATCGCAgACATGGTGATAGACAGCATGGTGGCGTCGGCTCAGCTGGAGGAGGAGTTGAGGCAGAAGGTGAGGGAGGCCATGTTGAAGAGACACCACCACCAGAACGAGAAGAAGCTCAGCAACCGCATCCCTCTGGTGCGCTCCTTCGCTGACATCGGCAAGAAACAATCTGACCCACACCTGCTTGAGAGAAACTGCCTCCTGGCATCCCCCCAGTCGGCTCCTGGGAACCTGGAGAACAGTAAACCGAGTGAGAGCCGCATCAACggaggaagcagagagaacagcactGTGGACTTCAGCAAGGTGGACATGAACTTCATGAAGAAGATCCCTCCTGGGGCGGAGGCGTCCAACGTGCTGGTGGGAGAGGTGGAATTCCTGGAGCGACCAATCATAGCCTTCATCAGGCTGTCCCCCGCCGTGCTGCTCACTGGTCTCACTGAGGTGCCCGTACCCACCAGGTTCCTGTTCCTGCTGCTGGGTCCGTTTGGGAAGGGTCCTCAGTACCACGAGATCGGCCGCTCCATCGCCACGCTGATGACAGACGAGGTCTTCCATGATGTAGCGTACAAGGCCAAAGACCGGAACGATCTGCTGTCGGGGATAGATGAGTTTCTGGACCAGGTGACCGTCCTACCCCCAGGAGAGTGGGACCCTACGATACGAATCGAGCCCCCCAAGAGTGTCCCATCTCAGGACAAGAGGAAGATGCCCTCATTGCCCAACGGCTCTGCCCATAATGATTCCTTCAAGGAAGACCAGCACCAAGCAGGACCAGAGCTACAGAGGACAGGGAGgatCTTTGGGGGCCTGGTGATGGATGTAAGGAGGAAAGCTCCGTTCCTGTGGGGAGATATTAGGGATGCTCTGAGCCTGCAGTGCCTGGCCTCTGTGCTGTTCCTCTACTGCGCCTGCATGTCCCCTGTCATCACTTTCGGAGGCCTGCTGGGCGAGGCCACCAAGGGAAACATTAGTGCGATCGAGTCGTTGTTCGGGGCGTCTCTGACGGGCGTGGCCTTCTCCATGTTTGCGGGCCAGCCACTCACCATTCTGGGCAGCACCGGACCAGTCCTGGTCTTTGAGAAGATCCTCTTTAAGTTCTGCAGTGACTACGACCTGTCCTACCTGTCCTTGAGGACCAGCATCGGCCTGTGGACGGCCTTCCTGTGCCTCGTCCTGGTTGCCACGGACGCCAGCTCCCTGGTCTGTTACATCACCCGCTTCACGGAGGAAGCCTTCGCAGCGCTCATCTGCATCATCTTCATCTACGAGGCCCTGGAGAAGCTGGTTCACCTTGGGGAACTCTACCCCATCAACATGAACAACAAGCTGGACAACCTCACCTTCTACGTATGTCAATGTTCTCCGCCGGTTAACGCCACGCCTGAGATCCAGCAGGTCTGGAACCACAGCGGGGTCGCACCAGAATCAATATCTTGGACCCAACTGGATGTCGATGAGTGTTCTAGGCTGCGTGGGGAGTTTGTTGGGCCAGCTTGCGGCCACCATGGTCCCTACATCCCTGACGTCCTCTTCTGGTCCGTCATCCTCTTCTTCACtaccttcttcctctcctccttcctcaagCAGTTCAAGACCAAGCTCTACTTTCCCACCAAGGTACGGTCGACCATCAGTGACTTTGCGGTCTTCCTGACCATCATGATCATGGTCCTGGTGGACTACCTGGTGGGCATTCCCTCCCCCAAACTGAATGTGCCTGACCGCTTTCAGCCCACGTCTGAGAACCGTGGCTGGGTGATCTCCCCGCTGGGGACCAACCCCTGGTGGACCATGCTGGCTGCAGCCATCCCTGCCCTGCTCTGCACCATCCTCATCTTCATGGACCAGCAGATCACCGCCGTCATCATCAACAGGAAGGAGCACAAACTCAAGaaaGGCTGTGGCTACCACCTGGATCTTCTGGTGGTGTCTGTGATGCTGGGGGTGTGCTCCATCATGGGCCTGCCCTGGTTTGTAGCGGCCACCGTGCTCTCCATCTCCCACGTCAACAGTCTGAAGCTGGAGTCAGAGTGCTCGGCCCCTGGGGAACAGCCCAAGTTCCTGGGGATCAGAGAGCAGAGGGTCACCAGCTTCATGATCTTCATCCTCATGGGCTGCTCTGTCTTCATGACCTCGGTGCTCAAGTTCATCCCTATGCCAGTCCTCTACGGGGTGTTTCTCTACATGGGTGTGTCCTCACTCAAAGGCATCCAGTTCTTTGACCGTATCAAGCTGTTCTGCATGCCAGCTAAGCACCAGCCGGACCTGATCTACCTGCGCTACGTTCCCCTGTGGAAGGTCCATGTGTTCACCCTGGTGCAGCTCACCTGCCTGGTGCTGCTGTGGGTCATCAAGGCGTCTGCCGCCGCCGTCGTCTTCCCCATGATGGTGTTGGCCCTGGTGTTTATACGGAAGCTGCTGGACCTATGTTTCACCAACAGGGAGCTGAGCTGGTTGGACGACCTGATGCCTGAGagcaagaagaagaaggaggacgACAAGAAGAAGAAAGCCAAGGAGGAGGCCCAGCGCATGCTGGACGTGGAAGAGGGCATAGCACACCCCTGCGACGGGCCGGGCATCCTCAAGACCCTCAAAGTCAGTTTGGACCCCTCTATGGTAAACATTTCTGATGAAATGGCCAAAACTGCCAATTGGAAGTCTGTCTCCATGAACTCTGACAGTGCCAAAGCTCTGAAGCATAGTGGCAGCCAGGCGAAGGTGTCCTGTGTGAAGATAAACTTGGAGAATGACCAGGGGGAGAAGTATGGGGATGCTGAGACCTCCTTATGAAGGAGGGACGGGAGGAGCAGGGAGAGTGCCACTTCAGCCTCTAGCCCACCAGGTGGcgttgtcctcctgtcctcccacaCAGCAGGGGGCAGTGTCCTTCATGGCCCTGTCCGTTGCCCT

Function

GO: NA

KEGG:

id description
K13861 SLC4A10, NCBE; solute carrier family 4 (sodium bicarbonate transporter), member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132307 lncRNA upstream 59108 14199253 ~ 14202942 (+) True G115216
TU132248 lncRNA upstream 86157 14066024 ~ 14175893 (+) True G115170
TU132238 lncRNA upstream 90480 14061335 ~ 14171570 (+) True G115162
TU132136 lncRNA downstream 2917 14317548 ~ 14318010 (+) True G115081
TU132354 lncRNA downstream 20526 14335157 ~ 14335397 (+) True G115262
TU132355 lncRNA downstream 21080 14335711 ~ 14335955 (+) True G115263
TU132129 lncRNA downstream 48591 14363222 ~ 14364303 (+) True G115077
TU132138 lncRNA downstream 50008 14364639 ~ 14366242 (+) True G115083
XM_036962057.1 mRNA upstream 31848 14109544 ~ 14230202 (+) False LOC110513267
XM_036962053.1 mRNA upstream 31848 14212414 ~ 14230202 (+) False LOC110513267
XM_036962061.1 mRNA upstream 31848 14220426 ~ 14230202 (+) True LOC110513267
XM_036961871.1 mRNA upstream 127004 14087047 ~ 14135046 (+) False LOC110535435
XM_036962071.1 mRNA downstream 24859 14339490 ~ 14343217 (+) True LOC110490457
XM_021617848.2 mRNA downstream 30260 14344891 ~ 14356726 (+) True LOC118936243
trnat-ugu mRNA downstream 94035 14408666 ~ 14408738 (+) True trnat-ugu
XM_036962002.1 mRNA downstream 116270 14430901 ~ 14497781 (+) False galnt1
XM_036962004.1 mRNA downstream 116270 14430901 ~ 14497781 (+) True galnt1
TU132280 other upstream 25196 14234514 ~ 14236854 (+) True G115189
TU132281 other upstream 117783 14141882 ~ 14144267 (+) True G115190
TU132139 other upstream 299238 13961261 ~ 13962812 (+) True LOC110535330
TU131892 other upstream 552676 13701610 ~ 13709374 (+) False LOC110520780
TU131856 other upstream 638085 13621977 ~ 13623965 (+) True LOC110520769
TU132383 other downstream 91413 14406044 ~ 14407912 (+) True G115289
TU132480 other downstream 241824 14556455 ~ 14565113 (+) True sec61b
TU132987 other downstream 438992 14753623 ~ 14770903 (+) False stx17
TU132969 other downstream 546089 14860720 ~ 14865283 (+) False si:ch211-197h24.6
TU132970 other downstream 547155 14861786 ~ 14865283 (+) False si:ch211-197h24.6

Expression Profile