RNA id: XM_036962200.1



Basic Information


Item Value
RNA id XM_036962200.1
length 940
RNA type mRNA
GC content 0.50
exon number 4
gene id sec61b
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14556397 ~ 14565113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAGGGCACCTAAAATGGTCCTTCGTTCTGTAATCGTGTCCTTTTTAGACAAGCGTCATCTTTCTTGGATTCCTTCTGAATTTGCAGCGATTTGTGTACAGCACTGCTGCCCTTTTGACGTGGACTTCAGTTCGAAGAACAGTTGAAGTTTTCTTCTTTAGTTGAAATCCAAAGTACAACTTAAAATGCCTGGACCAGCATCAAGTGCAACTAATGTCGGTGCAGGGAGCCGATCCCCCAGCAAGACAGTGGCCCCCCGCGCAGCAGGATCCACAGTCCGACAGAGGAAAGCAACGAGCAGTGGCACACGCAGTGCAGGCAGGACCACAGCGTCAGCGGGCGGCACAGGGGGCATGTGGCGCTTCTACACTGAGGACTCACCAGGACTCAAAGTAGGTCCAGTACCAGTGCTGGTGATGAGTTTGCTGTTCATCGCGTCGGTCTTCATGCTGCACATCTGGGGGAAGTACACCCGCTCCTAAACCCCGCCCCATGACCCTTCACCCTCAATCCCTGACCCTGCGGCGCAGCTTCTTAACACATCAGACCTGGACCAAACAACCAACCAACCTGAATCCCCAAACAACACTGCTCGCCTGTCCTGGCGGGCGGTACAGACCCAATCTGTCTGGTGTTCTCTTAGAGCAGCAGTCTAGTGTCCAACTCAAACTGAACTGCAGACCACCAGTGTGTTGCCCTTGAACACAGATCATCTAGGACTGAATCCTGACATGAGACTCATCTCCTACTGGCTGTTGTAGGTTCTGTTGATGACAATGGGTGATTCCTCTCCAGTAAGGATCAGGCACCTAGTCCCCTCATCAGGACGTCAGTAAGCATCTATATATTTCAGCCTGAATTGGAACCTGTAGATGTTTTGTTAACATCATTTGGACAACATTTTTATTGTGATATTGTACAATAAATGGACTCAAACAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU132473 lncRNA upstream 22763 14533357 ~ 14533634 (+) True G115344
TU132472 lncRNA upstream 29204 14526823 ~ 14527193 (+) True G115343
TU132471 lncRNA upstream 29882 14526037 ~ 14526515 (+) True G115342
TU132454 lncRNA upstream 48897 14506661 ~ 14507500 (+) True G115331
TU132445 lncRNA upstream 50859 14504666 ~ 14505538 (+) False G115330
TU132491 lncRNA downstream 12795 14577908 ~ 14578156 (+) True G115361
TU132497 lncRNA downstream 19336 14584449 ~ 14610652 (+) True G115363
TU132494 lncRNA downstream 19644 14584757 ~ 14585497 (+) True G115362
TU132500 lncRNA downstream 38133 14603246 ~ 14617366 (+) True G115365
TU132508 lncRNA downstream 74131 14639244 ~ 14639618 (+) True G115371
XM_036962002.1 mRNA upstream 58616 14430901 ~ 14497781 (+) False galnt1
XM_036962004.1 mRNA upstream 58616 14430901 ~ 14497781 (+) True galnt1
trnat-ugu mRNA upstream 147659 14408666 ~ 14408738 (+) True trnat-ugu
XM_021617848.2 mRNA upstream 199671 14344891 ~ 14356726 (+) True LOC118936243
XM_036962071.1 mRNA upstream 213180 14339490 ~ 14343217 (+) True LOC110490457
XM_036961990.1 mRNA downstream 144809 14709922 ~ 14741860 (+) False nr4a3
XM_036961983.1 mRNA downstream 144816 14709929 ~ 14744937 (+) False nr4a3
XM_036961979.1 mRNA downstream 144817 14709930 ~ 14744937 (+) True nr4a3
XM_036962079.1 mRNA downstream 188342 14753455 ~ 14771262 (+) False stx17
XR_005039421.1 mRNA downstream 188342 14753455 ~ 14774468 (+) False stx17
TU132383 other upstream 148485 14406044 ~ 14407912 (+) True G115289
TU132280 other upstream 319543 14234514 ~ 14236854 (+) True G115189
TU132281 other upstream 412130 14141882 ~ 14144267 (+) True G115190
TU132139 other upstream 593585 13961261 ~ 13962812 (+) True LOC110535330
TU131892 other upstream 847023 13701610 ~ 13709374 (+) False LOC110520780
TU132987 other downstream 188510 14753623 ~ 14770903 (+) False stx17
TU132969 other downstream 295607 14860720 ~ 14865283 (+) False si:ch211-197h24.6
TU132970 other downstream 296673 14861786 ~ 14865283 (+) False si:ch211-197h24.6
TU132971 other downstream 297760 14862873 ~ 14865283 (+) True si:ch211-197h24.6
TU133002 other downstream 312145 14877258 ~ 14878675 (+) True tmem67

Expression Profile