RNA id: XR_005039420.1


Basic Information

Item Value
RNA id XR_005039420.1
length 2846
RNA type mRNA
GC content 0.47
exon number 10
gene id stx17
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14753455 ~ 14775822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTCTTGCTATAATATTCACTATTGAACTTCATTCAATAACGTTCAATTAATCAGAAAGGTTACTGTATGTGACTGCTGTAGATTCAGCCTCAAGTGGCGGACCTTTCTCTCTGTGGGCTAAGGTTTTAGATCGGAAGTAATTCGTCTGCACGCAAGGAAGAGAGTTGTTTACAAACAGAAGAGAAAGTTGGACATGTAGCTAACTTGAGACAAACAGTTACGAAATAGCCTAGAAGAATGCATCTCTCAAGTTTTACACTCATGGATTTGTACTTTAActagctaacagctcgAGACAGACTGAGAACCTGTTATTCAAACCTTGGGCACGAGGGAGTCAGCAAACCTCCCTACTAGCCAGAAATGGTAGCTGAGTGAGAGGAGCACGTGTGTATGGTTGCAGGTGTGAGAACCCACCCGGGGTCAGATGTCAGGGAGGATGTCAGAGGAAGGGGGCAATCTGACGCTGAGGCGTCTTGAAGGGCCGATCCACAAGTTCACTAAAGTAGCCCTGCCGACAGACCTAGAAAgactacagagacaccacagcaATATACTGAAgTTCCAGCATAGTGGACAATGGGATCGCCTTCACCAGGAGCACATCAATGCCAGCCGCACTGTGCAGcaGTTGAGGTCTAAtgttagagagatggagaagcTGTGTGGACGTGTCCGCCCGGAGGACAGCCCCGCCCTGGAGAGGCTGGTTCAGCCAATCAGAGACCGAGCATCTGCTGCCACGCAAGACTTCCTACTCCTGCATTCTAACCCCGCCCCTCTGCCACAGGCACCACGCCCCCCAGACCACTCATCCTCAGGTGGTTCCCATGGTGATGATGTGGGCAGGGAGCCCCCTCCTGTTAATCAAACGCAGCTCCTCCTCCCAGTGATCCCCCTCAATGAGAGTGCTGCTGAGTCCTGGGACACTCTGGAGGAGGACCTGAAGGAGCTTAGCGGTTTGGTGACAGAGTTCTCTCTGCTGGTCCATtcccaGCAGGAGAAGATTGACAGCATAGAGGAGAACGTCAACACAGCAGCAGCCAACGTGGAGGAGGGGACCAGGAGCCTCGGGAAGgCGGTGGGCTACAGGCTGGCAGTGTTACCCGTGGCGGGGGCAGTGTTAGGGGGGGTGTTGGGTGGGCCGCTGGGCCTACTGGTGGGGTTCAAGGCAGCGGGGGTGGCAGCAGCGCTTGGAGGGGGGGCTCTGGGGTTTGCAGGGGGGAACCTGGTCCAGAAGAAACGCAGAGCTAGAGTAGAGTCCCAGATGAACCAGCTCACTGCACACCCTACGGAACCAGAACCACCGCTGGACAAGGACAAGTGACCTCTGATTGGTCGTGAAGGGACCTCTGACCTCCAGAAGCTTACACTGGTCCAGGAACTCCTCCTCATTCTCACTGCCaatagacagaggagagaggtctGTCAAGAGAGGCCTACTGTGAAGAGAAGCCTGCCCCTGGGATCTACCACTTCCCAAtcaataagacttttaaacaTTGTAGGAGAGCCTTGAGGACCTGAGTGTGAAAGGGAGGTGTGAATGCTGTGTTAGTTGAGTGTGATGTATGTATATATGCTGGGTCTGTTGGCTTTGTATTTAAAACttaagtaactgtccagtgtttccagatttctattaaATATGACCtacacatttttacaatataaatgaaatagttttccttccaaaatattttaaatatgttaaaaagcagcttgtctgtgttggaatggtgtgggcgtatactGATCTTAAAAATATTCATGcgagtagaccgctgattggccagctcatcctctgAGGAAACAGCAAGTTTTGAGATACAAGTTTGCGTTTTTTTTTGTTCTACAATTAATATTTTGCCCACACATACAGGTATAGGATGAGTCAACTGGACTTTCACTGCACAGTTACTTTAagtgtatgatatgttatgaaaaGATGTGCATTATTAGTAGCAAACACTACAGCCTGTCTAGTTTTGTAACATAAGTCCTGCTGTTTGGTGCCTTTTAGTACAGATGGGGAGATGGTAGTTTTATTAAAGTCATGTTATTATACTGTGTTTCTTGGACAGACTTGTCTTAACTTCCCTCAGTCTTGATCAAATACACACTGTGCCAAAGCCAGACACTGCCTGGGTCGAGCAGTCACCCATCTCTCTAGTTTATGAACTTATTGATGTTTATCTGAGTCTGCTGCTCTGCTTAGAGTATACAGCTCAttaacagagggaggagggaggtataaACAGCAGTAAATGTCAAGACTGTGTCCTGGTCTGAACCCTGCTGGAGAGGAGGTCTGCTCCCTCTGACAGACTGGGGAGCAGAGAATAAGAATTAGTGATTGTGATTGAGAAAGGTTAGGAGGATAAACAGCTGTCCTGGGTGTACCAGGTAGAAAGTTGTGATGCGTGATAGGCCAAAGTTTCCCCTCTAATAAGTGCCACGAGAGAAACAGGTCACACCTGATGTCATCTACTACAACAGTAGATGACCTCTGAACTCAGACCGGGACCAACCAAATATGGATGCTCTTAATCTATGTGATGATTTACTGGGGTTTTATATTGCCAAAGAAAACCAATAAAATCTGCTTCTGATGaaagaattgtgtgtgtgtgtgtaaagagtaTTCTCTGTAGAACTGAACAAACAGACTCAACACACAACATCCTGTAAAATGGTTTCATTTACTTGttttattttctccctctccGAGATGACTGATTTAGAAATGAGATTTCTCCCCCTTTAACCCTCCCTTCGTGATTGGTCAGATCAGGGTACTGTTGGGTTCTAGGGAGGGACTGTACACACAGTACTATAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133023 lncRNA upstream 3191 14749935 ~ 14750266 (+) True G115763
TU133021 lncRNA upstream 5092 14748126 ~ 14748365 (+) True G115761
TU132959 lncRNA upstream 24385 14677278 ~ 14729072 (+) True G115720
TU133044 lncRNA downstream 85366 14859834 ~ 14860568 (+) True G115784
TU132998 lncRNA downstream 96363 14870831 ~ 14871671 (+) False tmem67
TU133045 lncRNA downstream 119232 14893700 ~ 14894908 (+) True G115785
TU133046 lncRNA downstream 119844 14894312 ~ 14894587 (+) True G115786
TU133061 lncRNA downstream 137902 14912370 ~ 14914389 (+) True G115801
XM_036961983.1 mRNA upstream 8520 14709929 ~ 14744937 (+) False nr4a3
XM_036961979.1 mRNA upstream 8520 14709930 ~ 14744937 (+) True nr4a3
XM_036961990.1 mRNA upstream 11597 14709922 ~ 14741860 (+) False nr4a3
XM_036962200.1 mRNA upstream 188344 14556397 ~ 14565113 (+) False sec61b
XM_036962004.1 mRNA upstream 255676 14430901 ~ 14497781 (+) True galnt1
XM_036961885.1 mRNA downstream 19734 14794202 ~ 14837595 (+) False LOC110535632
XM_036961889.1 mRNA downstream 20636 14795104 ~ 14837595 (+) False LOC110535632
XM_036961883.1 mRNA downstream 20642 14795110 ~ 14837595 (+) False LOC110535632
XM_036961879.1 mRNA downstream 20645 14795113 ~ 14837595 (+) False LOC110535632
XM_036961890.1 mRNA downstream 20645 14795113 ~ 14837595 (+) True LOC110535632
TU132480 other upstream 188344 14556455 ~ 14565113 (+) True sec61b
TU132383 other upstream 345545 14406044 ~ 14407912 (+) True G115289
TU132280 other upstream 516603 14234514 ~ 14236854 (+) True G115189
TU132281 other upstream 609190 14141882 ~ 14144267 (+) True G115190
TU132139 other upstream 790645 13961261 ~ 13962812 (+) True LOC110535330
TU132969 other downstream 86252 14860720 ~ 14865283 (+) False si:ch211-197h24.6
TU132970 other downstream 87318 14861786 ~ 14865283 (+) False si:ch211-197h24.6
TU132971 other downstream 88405 14862873 ~ 14865283 (+) True si:ch211-197h24.6
TU133002 other downstream 102790 14877258 ~ 14878675 (+) True tmem67
TU133106 other downstream 231125 15005593 ~ 15007371 (+) True esrp1

Expression Profile