RNA id: XM_036962078.1


Basic Information

Item Value
RNA id XM_036962078.1
length 1386
RNA type mRNA
GC content 0.54
exon number 8
gene id stx17
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14753455 ~ 14775822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTGCTATAATATTCACTATTGAACTTCATTCAATAACGTTCAATTAATCAGAAAGGTTACTGTATGTGACTGCTGTAGATTCAGCCTCAAGTGGCGGACCTTTCTCTCTGTGGGCTAAGGTTTTAGATCGGAAGTAATTCGTCTGCACGCAAGGAAGAGAGTTGTTTACAAACAGAAGAGAAAGTTGGACATGTAGCTAACTTGAGACAAACAGTTACGAAATAGCCTAGAAGAATGCATCTCTCAAGTTTTACACTCATGGATTTGTACTTTAAGTAGCTGAGTGAGAGGAGCACGTGTGTATGGTTGCAGGTGTGAGAACCCACCCGGGGTCAGATGTCAGGGAGGATGTCAGAGGAAGGGGGCAATCTGACGCTGAGGCGTCTTGAAGGGCCGATCCACAAGTTCACTAAAGTAGCCCTGCCGACAGACCTAGAAAgactacagagacaccacagcaATATACTGAAgTTCCAGCATAGTGGACAATGGGATCGCCTTCACCAGGAGCACATCAATGCCAGCCGCACTGTGCAGcaGTTGAGGTCTAAtgttagagagatggagaagcTGTGTGGACGTGTCCGCCCGGAGGACAGCCCCGCCCTGGAGAGGCTGGTTCAGCCAATCAGAGACCGAGCATCTGCTGCCACGCAAGACTTCCTACTCCTGCATTCTAACCCCGCCCCTCTGCCACAGGCACCACGCCCCCCAGACCACTCATCCTCAGGTGGTTCCCATGGTGATGATGTGGGCAGGGAGCCCCCTCCTGTTAATCAAACGCAGCTCCTCCTCCCAGTGATCCCCCTCAATGAGAGTGCTGCTGAGTCCTGGGACACTCTGGAGGAGGACCTGAAGGAGCTTAGCGGTTTGGTGACAGAGTTCTCTCTGCTGGTCCATtcccaGCAGGAGAAGATTGACAGCATAGAGGAGAACGTCAACACAGCAGCAGCCAACGTGGAGGAGGGGACCAGGAGCCTCGGGAAGgCGGTGGGCTACAGGCTGGCAGTGTTACCCGTGGCGGGGGCAGTGTTAGGGGGGGTGTTGGGTGGGCCGCTGGGCCTACTGGTGGGGTTCAAGGCAGCGGGGGTGGCAGCAGCGCTTGGAGGGGGGGCTCTGGGGTTTGCAGGGGGGAACCTGGTCCAGAAGAAACGCAGAGCTAGAGTAGAGTCCCAGATGAACCAGCTCACTGCACACCCTACGGAACCAGAACCACCGCTGGACAAGGACAAGTGACCTCTGATTGGTCGTGAAGGGACCTCTGACCTCCAGAAGCTTACACTGGTCCAGGTACTGCCCGACTACATTGCAGACACATGCTAGAgcttacatatacagtggggcaaataaagtatttagtcagccaccaattgtgcaagttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133023 lncRNA upstream 3194 14749935 ~ 14750266 (+) True G115763
TU133021 lncRNA upstream 5095 14748126 ~ 14748365 (+) True G115761
TU132959 lncRNA upstream 24388 14677278 ~ 14729072 (+) True G115720
TU133044 lncRNA downstream 88572 14859834 ~ 14860568 (+) True G115784
TU132998 lncRNA downstream 99569 14870831 ~ 14871671 (+) False tmem67
TU133045 lncRNA downstream 122438 14893700 ~ 14894908 (+) True G115785
TU133046 lncRNA downstream 123050 14894312 ~ 14894587 (+) True G115786
TU133061 lncRNA downstream 141108 14912370 ~ 14914389 (+) True G115801
XM_036961983.1 mRNA upstream 8523 14709929 ~ 14744937 (+) False nr4a3
XM_036961979.1 mRNA upstream 8523 14709930 ~ 14744937 (+) True nr4a3
XM_036961990.1 mRNA upstream 11600 14709922 ~ 14741860 (+) False nr4a3
XM_036962200.1 mRNA upstream 188347 14556397 ~ 14565113 (+) False sec61b
XM_036962004.1 mRNA upstream 255679 14430901 ~ 14497781 (+) True galnt1
XM_036961885.1 mRNA downstream 22940 14794202 ~ 14837595 (+) False LOC110535632
XM_036961889.1 mRNA downstream 23842 14795104 ~ 14837595 (+) False LOC110535632
XM_036961883.1 mRNA downstream 23848 14795110 ~ 14837595 (+) False LOC110535632
XM_036961879.1 mRNA downstream 23851 14795113 ~ 14837595 (+) False LOC110535632
XM_036961890.1 mRNA downstream 23851 14795113 ~ 14837595 (+) True LOC110535632
TU132480 other upstream 188347 14556455 ~ 14565113 (+) True sec61b
TU132383 other upstream 345548 14406044 ~ 14407912 (+) True G115289
TU132280 other upstream 516606 14234514 ~ 14236854 (+) True G115189
TU132281 other upstream 609193 14141882 ~ 14144267 (+) True G115190
TU132139 other upstream 790648 13961261 ~ 13962812 (+) True LOC110535330
TU132969 other downstream 89458 14860720 ~ 14865283 (+) False si:ch211-197h24.6
TU132970 other downstream 90524 14861786 ~ 14865283 (+) False si:ch211-197h24.6
TU132971 other downstream 91611 14862873 ~ 14865283 (+) True si:ch211-197h24.6
TU133002 other downstream 105996 14877258 ~ 14878675 (+) True tmem67
TU133106 other downstream 234331 15005593 ~ 15007371 (+) True esrp1

Expression Profile