RNA id: XM_036939074.1


Basic Information

Item Value
RNA id XM_036939074.1
length 3775
RNA type mRNA
GC content 0.50
exon number 6
gene id osgin2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15623977 ~ 15633803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagcagtagcagcagcagcagcaggaggaggaggaggaggaggaggaggatgatagGCGGGAGCTAGACAGACCGCGgtgccgctttgtggacaacgactcccattgtagGGCGGAGAGACGTGTGTCTTGTCAGTAATCCATAGTCTTTGGTCAAACACAGAAACCGTTTTCTTTCCTTCTGAAGCAAGGACATCTGTCCTTGAGGTGGATAGATAAAAGTGTCGGGTGACATTAGTAACATATTCAGGATTGGATGCTGTCATTAATGGTTAAAACACATCTCATCAGACATTATCTGTTCactgcagagagagcgagagagaagctgagagtgagtgagggaggtgGTATGTGTGTCATCTCATGAGCTCGATAGAGCCTCCCACCGGCGACTGCATATATACAGTGAGAGCGGCGGCCGTCGGCCGTACAGAGGAGTGATTGGGAGATATAGAGATACATCGTACGGAGGTAAGTAGCCTACAGAGCTGCCGCTTCAGAGCTGAGGGATGGTGTTGCTGCTTTCTCTTGGAGGGATGCGGAGAGCTAGAGGATGGCCGGGAGTGTCTGACAAATTATAGtgtgccGGCTCTGGCTCTGGCTACAGCCATGCCTCTTCTGGAAGAGACCACTGTGCCTCGAGAGCATCCCCCCACACTGCCTGTGGTCATCATAGGTAACGGGCCATCAGGTATCTGCCTGTCCTACCTGCTGAGTGGCTACAAGCCCTACCTGGACCCTTCAGCTGTTCACCCAAACCCTGTTCTGTACAGGAAGTTACAGGAGACCAGACACCTGCCCATCACTGAACAGGATCTGGAGTATCTGAGTGAAGGTCTGGAGGGGCGGTCAGGAAACCCTGTAGCGGTGCTGTTTGACACCCTGCTGCACCCCAATGCGGATTTTGGCTACGAGTTTCCCCCTGTGCTACAGTGGAGAAGAGACAAGCAGCAGCACCTCCCTCACCTGGTGCTGGGCAGGGCAACGCCTGGAGGGGCCTGGCACgTGATGGAGGGCTCCATGCTGACCATCAGTCTGGGCATCTGGATGGAACTGCCAGGGATCAACTACCGAGACCTGACTAACAATGGCAAATGCAGgggcgTGACCAACGACCGGGCCACTCCAGAGGAGATCTCGTCTTACTACCGTAACTACGTCAAGCTGATGGGCCTGAAGCAGAACTTTGTTGACAACACCTACGTGACCTCTGTGCAGAAACTTTTCCGTGGACCCGAGGGCGAGGGTCTAGAGAATGGTCATGGAGGGTtgggggaggagggaaagggggTGTACGAGGGGGGAAAGGGGGTGTACGAGGGGAGGGAGAGTCAGGGTGTAGACGAAGGGGGAGGTGGGGGCCTGTGGGAGGTGAGGGGGTACCAGCGGGTGCAGGGCGACACCCACGTTCCTTTCTGCCTGTTTTCAGAGAATGTAGTTCTTGCCACGGGCGCGTCTGATTCGCCAGCTCAGCtgggtgtggagggggaggagctTCCCTTCGTGTTCCACAGCATCTCTGCCCTGGGATTGGCTGTGAGCCGGAAGAAGCTTGGGCCAAACTCTGATCCGGTGCTGATTGTGGGGGCGGGGTTAAGCGCGGCGGATGCGGTTTTGTGCGCTTGTAACAACAACATTTCCGTGCTGCATGCCTTCCGCAAACACGTAGACGACCCAGGCCTCATCTTTAAACAGCTACCCAAGACCCTCTACCCAGAATACCACAAGGTCTACCACATGATGCACTCCCAGACCCACGCAACACCAAACATGGCTGCCACCTCCACCACCAATGGCCTTCCCAGCATGGCCGCCTCAGTCTGCTCCAAGATGTGCTCCAAGCCCCAACCCACCACAACTAACACGGCCGCCagtggtggtcccgttctgttcCCTGACTACACCAGCTTCCCAGAGCACTGCGTGGAGTCCTTCCAGCCAGACATGAAGTGTGTCCTGCAGGGGAGCAACTCCCTCAAGGCCTTTAAGATCTCCATGGCCCTGGTGTTGATCGGCACCCATCCCAACCTGTTCTTCCTCAAGGGCCAGGGCCAGTACCTGGGACTGGACCCCACCAAACCCATCTCCTGCAAGCAGAACCCTGTGGATGTGCACCCCTACACCTTCGAGTGCACCAAGGACCCAGGACTGTTCGCCATGGGCCCGCTGGTGGGAGACAACTTTGTTCGCTTCCTAAAGGGCGGTGCTCTAGGCATTGCCTCCTGCCTGCTCAAGAGACTGAAGAAGAAAGGCAAGCTGATCGCAGAAgggggaggagtaggaggaggggaGTTTATCTAGGTGAAGTGTGGATGGAGAGGAACGAGGTGGTGAATAAgttggaagggagagaggaggaagaggcatcTTTATTTAAGCGAAGGGAGAAAGGAtgtggagaaagggaggagaggaaggaggaagaggagggggttcaTCTTAGTAAAAATAGCTACTATAACCAATGGAGTTCTGAGTTAAAAGGGCAAAGCCAAACAGTACGTTTTTTAATATTTTATTGTTTGCAGTGGACATGCCTATTTGAACTCTGAAGCTTTCTTACCACTTCTGAGAGAACTGAAAACAATGGAAGTGGAGGCAGGCTAGTTACAGTTCATGACCAGGTTCAGCCCACCACCTGTTACAGCTCCACTGTTCTGGTTTCTGCTGGGAAGCTGTCACAGGGTTTAATGTCCTCTATCCAGAAATCCAACCTGCAGTGTGAAAATGTTTTTTAGAGTCATATTTGTGACATTTTGTAATGTCTTGAGTTTTTATTTGCTCACCTTGTCTTTCAAGCAAGTGCATTTTCTGATTTCTCATCTACTTTAAACAATTGTTCTACTATTTCTCTGATGGCCTTCACCATGCAATGGACTGTGAACCACTACAACTCCCCTTTAAAGCTTCAAGGAAATGGAACTTTGTAGAGATAGGCCCATAGCTGCTATAGTGTTTCTGCCATCATCTCAATTCTGAGTTTCTCATCAGTGCCAAGCTTCAGACCCCAAGCAGTATCTGGTTGTGATCTTTGAAAAATAATGATTTTGGATGCAgcagttgttagctagaatgctaacgctcATTGACATAGGCTGTAGAAAAGGCTAGTCAAATagccattttactggttgaagttgaagtgttttttaagtataatgcagttgatttgGGGTAACACAAACgttatattaagcaggacattcatacgagccttaaaatccaattataatccaaaagtagtgtgaaatgcactcataagtAACATCTAAATATAGGCTTTTTTGCTGCCACCAATTTGCAGCAATGTTAACACAGAAAGGGGTCTATAAACTACTACTAGTCGACGACTCCTGATAAGTGTACATTGGATAAACGCAAACTGTAGCTGCATTCTTTGACGTCCATCAGTCTGAATACAAAACTACTTGTCCATTGCATTTATCAGGAGTTGACTATCGCCTATTGAAGTCATAATGACTGTTAAATGCACATTTTCTGGTTGCCATTATGGAGTAAATATTATGCCTGTGGCTCTGATTCCAGGTCCGTATAGTATTCTCTGTGACATTTCTCATACCATGTCACTTTCACACAGCCATCATACGCCTCATGTGTTTGTTTTGCCAAATACCTGTTACTGTATGTAAAGCTGTGAGGACTGAGGGTGGAGTTTCATTCATTTATTGAACCAGTCAGTCGCCTTTAGAATGTGTGTATTCATATGCAGTTTATTTCCGCATGCACTCATCCTCAAGACTGAAGCTGCTTgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133633 lncRNA upstream 9023 15610702 ~ 15614954 (+) True LOC110535866
TU133631 lncRNA upstream 9710 15610702 ~ 15614267 (+) False LOC110535866
TU133722 lncRNA upstream 20039 15593195 ~ 15603938 (+) True G116325
TU133720 lncRNA upstream 48240 15567226 ~ 15575737 (+) True G116323
TU133685 lncRNA upstream 120132 15503282 ~ 15503845 (+) True G116289
TU133741 lncRNA downstream 11094 15644897 ~ 15649115 (+) True G116340
TU133791 lncRNA downstream 65610 15699413 ~ 15699661 (+) True G116368
TU133783 lncRNA downstream 94041 15727844 ~ 15730523 (+) False LOC110535950
TU133784 lncRNA downstream 96253 15730056 ~ 15734894 (+) True LOC110535950
TU133843 lncRNA downstream 182635 15816438 ~ 15816979 (+) False G116416
XM_036938988.1 mRNA upstream 9710 15482391 ~ 15614267 (+) False LOC110535866
XM_036938997.1 mRNA upstream 9710 15482398 ~ 15614267 (+) False LOC110535866
XM_021621155.2 mRNA upstream 146022 15467158 ~ 15477955 (+) True LOC110535823
XM_021621164.2 mRNA upstream 172121 15448845 ~ 15451856 (+) False LOC110535842
XM_036938948.1 mRNA upstream 172122 15448845 ~ 15451855 (+) False LOC110535842
XM_021621339.2 mRNA downstream 38183 15671986 ~ 15681594 (+) False LOC110535935
XM_021621334.2 mRNA downstream 38300 15672103 ~ 15681594 (+) False LOC110535935
XR_005035193.1 mRNA downstream 38300 15672103 ~ 15681594 (+) True LOC110535935
LOC110534191 mRNA downstream 57329 15691132 ~ 15694443 (+) True LOC110534191
XM_036939143.1 mRNA downstream 67383 15701186 ~ 15729563 (+) False LOC110535950
TU133662 other upstream 172289 15450468 ~ 15451688 (+) True LOC110535842
TU133604 other upstream 257188 15355858 ~ 15366789 (+) True LOC110535783
TU133587 other upstream 286275 15337430 ~ 15337702 (+) True G116224
TU133558 other upstream 287619 15329582 ~ 15336358 (+) True LOC110535811
TU133565 other upstream 352368 15271202 ~ 15271609 (+) True G116207
TU134636 other downstream 549883 16183686 ~ 16185784 (+) True G117048
TU135335 other downstream 1361907 16995710 ~ 16998361 (+) True LOC110536275
TU135454 other downstream 1416329 17050132 ~ 17050839 (+) True G117704
TU135467 other downstream 1439398 17073201 ~ 17073701 (+) True G117714
TU135631 other downstream 1766210 17400013 ~ 17409287 (+) False LOC110520798

Expression Profile