RNA id: XM_021621339.2


Basic Information

Item Value
RNA id XM_021621339.2
length 2793
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC110535935
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 15671986 ~ 15681594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAGCGCACTTATtcgtcttcttttttttttggagAGCGCTTCACTCAAACCATCCCCATGCCCGCCCACCTGTCACGGTCcatgctatccgggatccttgggacgagCTTACCTCCCTTTGAAGTTGGTTAATAATGCTTAAGGTTAGGTAAGgattatggttaaggttagagtaagagtagggtttaaggttaggatttaggGTATGGACGTCCCAAGGCTCCCAGATAGCACTAGCATACCTGGCATTGCTACGCGGAAGTAAGTGGATGAATGCACTCCGGAATTCAAGGGAATATAAACGTAAAAAGTATGCGGGCTGTGTCTGCGCTAGTGTTCCTGGCCGTGggtgtgatggtggtgttgatgtacCAGGCGGTCCGCCAGGAGCTGACTCTGCAGGGTCTTAAAGCCCGCGCTCTGGAGAGCTCCTCTCAGGTCAAGCAGAAGGAGAACGACATCGTCCAGGTCAAGATGAAGATCCAGAAGCTGAATGGTGAGCTGGAGCCCATCAACACCCAGAGAGAGGAGCTGACTAAGAAGAAGGAGCAGTCTGCTAAAGCCACAGGCGAGGCGGACAAGAGTCTAAAGACCTGTCATACAGAGAAGGCCGATGCGGAGAAAAAGAAGACTGACGCGTCGGCGGCCCTTCAGAAAGTTAAAGATGATCAAGAAGCACAGAAGAAGAAAGCTCAGGAGGAGATCCAGGCGTTGAAACAGCAGATTCTGGAGCGGGACAAGGCACTGTGTGCCTTTGTGGACCAGACCAATGAGGAAGGACGGAAGCTGTGTGGAATCACAGAGGCCCCAAAATGAAGACTTGGACTAGACTATcagcctccatccctccctccctccctcatgcttGCCGTgatgcacacacacccatacacatcaTCGTTGTGCAGCTCATAACATTCCCCACCTACAACCACCTTCACTTCACTGTACCTCTCAATACTCaggaaaataaaaaacaagaaggGTTTGGAAAACCCAGTCTGAATGTCATGtcttcattacatacagtacactgtTAGTTTGTGTATGCAGGTAAGGAAGGGAgacattacattttttaattAGTGAGTTTCATCCTATGGTACAGGACATTAATGTAGGAATGACTGAAAGAGGTTAGGGCTAATTCCCTCAGAGATGGAGCAAGGTGTCTCTGAGGTGACTTCTGAATGTTGCAAAGGTTCTAGAGAAGAGTTCTAAAGAAGTGTGAAGGTGCATGCCCATCTGGTTCAATTGTCTATTAAATATTTATTATGCATAGATGTATGATTGACCTTTATAGTGCATCAATGTATGAATTACCTTTATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTTATATTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTCATAGTGCATAGATCTATGATTGACCTTCATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTCATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTTATAGTGCATAGATCTATGATTGACCTTCATAGTGCATAGATCTATGATTGACCTTTATAGTGCATCGATGTATGAATGACCTTTATAGTGCATAGATGTATGAATGACCTTTATAGTGCATAGATGTATGAATGACCTTTATAGTGCATAGATGTATGAtttacctatatagtgcatagATCTATGATTGACCTTTATAGTGCATCGATGTATGAATGACCTTTATAGTGCATAGATGTATGAATGACCTTTATAGTGCATAGATGTATGAATGACCTTTATAGTGCATAGATGTATGAATGACCTTTATAGTGCATAGATGTATGAtttacctatatagtgcatagATCTATGATTGACCTTTATAGTGCATCGATGTATGAATGACCTTTATAGTGCATAGATGTATGAATGACCTTTATAGTGCATAGATGTATGATTGACCTATATAGTGCATAGATGTATGATTGACCTTTATTGCATTTGGGTGTGGTGTGCGTTAATCAGAGTAGAACATTGCCCTGTGTGGGTGTGGGTAATGGGAAAATTTCAGATGAATAAAGTGAATATTCAGTTAACAGTAATTAACACAATGATTAGCATATGTATATGTTTTCCCTTTCTATAATACACATGATTTCCAATGTTCTATTTGTGAGACTCACTTTTGTATGGGTTAATGGTCACTAGACCTGAGCTACTGAAGGTACAAGGACCGAGAACACACATTATTATTGTATTGATGACATTATGAACACTGAGTGATTCTGTAGCAGACGGCAAAGTCACTGTCTTTGTATTGACTCCAAGCCTCTCTGGCTGATATTTTAGAGAACATTTGGTACTGTCTGATTAGAATATGAAGGTTCTGTCTCCAAAAGCCCCGTTGGACATTTTCTATGCTTCTGTTCTGGAGGTGTCTCCCTGAATGATTGTATTAAACTGGATGGATTTGATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133741 lncRNA upstream 22871 15644897 ~ 15649115 (+) True G116340
TU133633 lncRNA upstream 57032 15610702 ~ 15614954 (+) True LOC110535866
TU133631 lncRNA upstream 57719 15610702 ~ 15614267 (+) False LOC110535866
TU133722 lncRNA upstream 68048 15593195 ~ 15603938 (+) True G116325
TU133720 lncRNA upstream 96249 15567226 ~ 15575737 (+) True G116323
TU133791 lncRNA downstream 17819 15699413 ~ 15699661 (+) True G116368
TU133783 lncRNA downstream 46250 15727844 ~ 15730523 (+) False LOC110535950
TU133784 lncRNA downstream 48462 15730056 ~ 15734894 (+) True LOC110535950
TU133843 lncRNA downstream 134844 15816438 ~ 15816979 (+) False G116416
TU133844 lncRNA downstream 134844 15816438 ~ 15816979 (+) True G116416
XM_036939074.1 mRNA upstream 38183 15623977 ~ 15633803 (+) False osgin2
XM_036939081.1 mRNA upstream 38183 15623978 ~ 15633803 (+) True osgin2
XM_036938988.1 mRNA upstream 57719 15482391 ~ 15614267 (+) False LOC110535866
XM_036938997.1 mRNA upstream 57719 15482398 ~ 15614267 (+) False LOC110535866
XM_021621155.2 mRNA upstream 194031 15467158 ~ 15477955 (+) True LOC110535823
LOC110534191 mRNA downstream 9538 15691132 ~ 15694443 (+) True LOC110534191
XM_036939143.1 mRNA downstream 19592 15701186 ~ 15729563 (+) False LOC110535950
XM_021621383.2 mRNA downstream 60736 15742330 ~ 15755295 (+) True ecm1b
XM_036939200.1 mRNA downstream 78355 15759949 ~ 15783001 (+) False LOC110535970
XM_021621404.2 mRNA downstream 78420 15760014 ~ 15778972 (+) False LOC110535970
TU133662 other upstream 220298 15450468 ~ 15451688 (+) True LOC110535842
TU133604 other upstream 305197 15355858 ~ 15366789 (+) True LOC110535783
TU133587 other upstream 334284 15337430 ~ 15337702 (+) True G116224
TU133558 other upstream 335628 15329582 ~ 15336358 (+) True LOC110535811
TU133565 other upstream 400377 15271202 ~ 15271609 (+) True G116207
TU134636 other downstream 502092 16183686 ~ 16185784 (+) True G117048
TU135335 other downstream 1314116 16995710 ~ 16998361 (+) True LOC110536275
TU135454 other downstream 1368538 17050132 ~ 17050839 (+) True G117704
TU135467 other downstream 1391607 17073201 ~ 17073701 (+) True G117714
TU135631 other downstream 1718419 17400013 ~ 17409287 (+) False LOC110520798

Expression Profile