RNA id: XM_021621651.2


Basic Information

Item Value
RNA id XM_021621651.2
length 3559
RNA type mRNA
GC content 0.52
exon number 6
gene id chrnb2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16133770 ~ 16173038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACGGACAGCCAATCCCGCTCGGCTCGACTCCTAAGTATACCTGGAGATTTTAGACACGAATAAAAACTATGTCTGTACTGAGAAGACCTGACGGAACCATGACAGGTACCGAGTGAAGAATTAATAAAGGAATATCAAGAAGAGTGCACTGCGTCTGTTCCGGAGGCATTCGAGGATCGAGTGAGCACCTTTTGGTTCGGAgcgcacacatacgcacgcagCTGAGCAGCGATGGGCGCTTGGACGCGGATGCTGTGCCTACTCGCCATTGTGAGAGGCAGCCTGGGGGCGGATACTGAAGAGCGGCTGGTGGAGCACCTGCTAAACCCCGCCCACTATAACAAACTGATCCGCCCAGCGACCAATGGCTCTGAGCTGGTGACGGTTCAGTTGATGGTGTCACTGGCCCAGCTCATCAGTGTGCACGAGAGAGAGCAGGTCATGACCACCAACGTCTGGCTCACACAGGAATGGCAGGACTACCGTCTGACATGGGTCCCTGAGGAGTTTGATGGCATGGAGAAGGTCAGACTGCCTTCCAAACACATCTGGCTGCCCGACGTTGTGCTGTATAACaaTGCTGACGGAATGTACGAGGTCTCCTTCTACTCCAACGCGGTGGTCTCCCATGACGGCAGTATCTTCTGGCTGCCTCCAGCCATCTACAAGTCAGCCTGTAAGATCGAGGTCAAACACTTCCCCTTCGACCAGCAGAACTGCACCATGAGGTTCCGCTCCTGGACCTACGACCGCACAGAGATCGACCTGATCCTGAGGTCCGACGTGGCCAGCATGGACGACTTCACACCCAGCGGAGAGTGGGACATCATCGCCCTGCCGGGGCGCCGCAACGAGAATCCTGCCGACCCCACCTACGTAGACATCACTTATGACTTCATCATCCGCAGGAAACCTCTGTTCTACACCATCAACCTCATCATCCCCTGTGTCCTCATCACCTCTCTGGCTATCTTAGTGTTCTATCTGCCCTCTGACTGTGGAGAGAAGATGACCCTGTGTATCTCTGTCCTGCTGGCCCTCACTGTGTTCCTCCTGCTGATCTCTAAGATCGTCCCCCCCACCTCCCTGGACGTTCCTCTGGTCGGGAAGTACCTGATGTTCACCATGGTCCTGGTGACCTTCTCTATtgtcaccagtgtgtgtgttctcaacGTGCACCACCGctcacccaccacacacaccatgCCCCCCTGGGTCAAGCTGGTGTTCCTCAACAAATTGCCTGCGCTGCTCTTCATGCGCCAGCCCCAGAACAGCTGCGAGCGTCAGAAGCTGCGCCAGCGACGTAGGGGCcaggagcagagggaggggggcagggaTGGGGGCTCTGCCGGGGGGCTGATGGTGGGCCTGGGGCTGGGGGGCGGAGGGGGTGGCACGGATAACAACGACCCCTGTACGTGTTACGTGAACCGGGCATCGGTGAAACAGTTTGTAGGGGAGCTGGGAGGGGGCGCGGGGGGAGGAGGGTCGATGGAGGGGCTGAACGGGCTGAGGGAAGACAGGGAGGGGGGGCAGGGGAACCGGCCCAGGGGGAAACAGGTAGAAGGGGGCCCAGCCCTGACCCAGGCCGTGCTAGGACAAGCCTGCCCTGGGTTGGAGGAGGCTGTCGACGGGGTCCGCTTCATCGCCAACCACATGAAGACTGAAGACGACGACCAGAGCGTGAGCGAGGACTGGAAGTATGTTGCCATGGTGATCGACCGTCTCTTCCTGTGGATCtttataattgtgtgtgtgtccggaACCGTCGGGATGTTCCTCCAGCCACTGTTCCAGAACTACACTGCCAAGACCATCACCAACACCAATGGCTGACCAACCAGGTTCCCAGCAGCATCGATGGACACCGCCCCGACCCAATCAGCACAGCAGGACAGGGGCAGgagggagggacctgcccagcaGGGGAAGTGGGTTTTATTAAGTCTGTGGAACTATATTGGACAGGAGCCACACCTGTTAACCTTTATAGCCTTTCTACTGAACTGTTCTGAACTGAAGAACTAAACTTAACACCAACACCGTATTAAAGATCGTTTTTTTTTCCAGAGGAGGGATAAATGGATGGACAACTCTTCCCTTTTTCCCAGAGGAAGGTGGAGttatgcctctcctctctccctctgagtGATCAGGGAGAGAGGACAATCTCTAAATTGTTTGACATCCTGTAGAACGCTACGCCAGCCAATCAATGCTCTTCATTCCAAGCTGACTGTGCAAGCTTACTGAGAGTATATTGTTGCACCTTAACTGGTACAGAACTTAATGCTTCAGTAACAGAACCTTGATTGGAAACTGTGTCAACCAATCagaaaaatgtaaaggcaattgTTTTTCCAAGCCACTTCTGTTATTAAGCCAActgatagtacagtacagtatattttaCCATAGCATAGCAGTGTACCACAGTATAGCTTTGAATATAATGTTATTGCGATTTCTCTGTGTCTTCCTGAGAGAAAGGTAGGGTGCAGTGGTTTGTTGTATGATTCTCTACGCTTTTAAACAAGAATGTGATATTACCTGTACTACACAGCCTGTGACGTGCACGCTAACACTATATGAGTAGAAGAGACAGATcgtgaaggagagagatgaaagagagagagggatattgACAGAGAGTTAGATGGAATGAGATGAAGTAGTTATAGTGAATCCCAAACCGCCCCCTTGCCAATACCAACTCCCTCCGTTGTCACGTGTTGTTGACGAAGCTCCGAGGGTGACTTCCAGAGAGTGTCGATGGGATCAATAAACCCACCGGGACCAGTCTCTGAATCAGACATAAACACATGCACGTGGTATATAATTAGACACGCCTCTCCGTTTTTTACAATTCAATTGTGCTAACTTCAGACATATAGCAGTGAGTGTTGGGATAGCACTTCGCTCTGAAGCCTGCATCCGTGCTGGCTAGGTCGAAGTGGCTATAGGAGGATCTAATTAGCCCCTACACCCAATTTTCACTCCCTCAGCTTTAGTACACTTGTGCAAATGGCGGAGGCTCGTGTGAACGCGCAAATGGAGTGCCGAGGGGCCAGGCGAATGGGGTGATTTGGGATTCAACCTTAGAGAAAGATAAAGGTGTAGGATGTCTGCATATACAGCTCTATTGGGATAATAGCAGCTTGTGCCATCGGGTACAGTTGCAAGGGGATGAGTTTAGATTCAGTTCCTGGGAAACTGAGATTGGGTTGAGCCAAGATGGAGGAAATTCCCTCCTTTTACAGTTGAGCCATGATTGCACAAAATTGGGTGGTCGAATATAGAACTGACAGATGATATGTATTGTTGGAATAAGGATGTTTTCTCATGAAACATAAGCTATTGTGTGTTATGAATGTTTGCATAAATGTTCATTTCTGTCATCACTGTGATTCTCATTATCAGAGTAAGACAGTGTctcactctgtcctctcttcctttcctccctatctcctcccctccttccccctcctgtcctcccctccttctccctctctcctctcttcctttcctccctctctcctcccctccttccccct

Function

GO: NA

KEGG:

id description
K04813 CHRNB2; nicotinic acetylcholine receptor beta-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134017 lncRNA upstream 41451 16090562 ~ 16092319 (+) True G116548
TU134008 lncRNA upstream 51120 16082016 ~ 16082650 (+) True G116545
TU134006 lncRNA upstream 53698 16077034 ~ 16080072 (+) True G116543
TU134000 lncRNA upstream 58575 16073919 ~ 16075195 (+) True G116542
TU133999 lncRNA upstream 62591 16069308 ~ 16071179 (+) True G116541
TU134031 lncRNA downstream 223 16173261 ~ 16174047 (+) True G116560
TU134033 lncRNA downstream 1081 16174119 ~ 16174776 (+) True G116561
TU134637 lncRNA downstream 9852 16182890 ~ 16185701 (+) False G117048
TU134645 lncRNA downstream 16996 16190034 ~ 16264925 (+) False G117053
TU134647 lncRNA downstream 16996 16190034 ~ 16195631 (+) True G117053
XM_036939430.1 mRNA upstream 16211 16108811 ~ 16117559 (+) True LOC110536089
XM_036939344.1 mRNA upstream 97781 16023748 ~ 16035989 (+) False LOC110536080
XM_036939353.1 mRNA upstream 97781 16023749 ~ 16035989 (+) False LOC110536080
XR_005035208.1 mRNA upstream 307240 15820843 ~ 15826530 (+) True LOC118937786
XM_021621452.2 mRNA upstream 331999 15787793 ~ 15801771 (+) False znf687a
XM_021621796.2 mRNA downstream 117107 16290145 ~ 16298549 (+) True LOC110536177
XM_036939628.1 mRNA downstream 343043 16516081 ~ 16667428 (+) True LOC110512627
XM_036961677.1 mRNA downstream 560295 16733333 ~ 16747286 (+) True LOC118936591
XM_036939646.1 mRNA downstream 586698 16759736 ~ 16767223 (+) False LOC110520867
XM_036939656.1 mRNA downstream 698504 16871542 ~ 16875899 (+) False LOC110536210
TU133662 other upstream 682082 15450468 ~ 15451688 (+) True LOC110535842
TU133604 other upstream 766981 15355858 ~ 15366789 (+) True LOC110535783
TU133587 other upstream 796068 15337430 ~ 15337702 (+) True G116224
TU133558 other upstream 797412 15329582 ~ 15336358 (+) True LOC110535811
TU133565 other upstream 862161 15271202 ~ 15271609 (+) True G116207
TU134636 other downstream 10648 16183686 ~ 16185784 (+) True G117048
TU135335 other downstream 822672 16995710 ~ 16998361 (+) True LOC110536275
TU135454 other downstream 877094 17050132 ~ 17050839 (+) True G117704
TU135467 other downstream 900163 17073201 ~ 17073701 (+) True G117714
TU135631 other downstream 1226975 17400013 ~ 17409287 (+) False LOC110520798

Expression Profile