RNA id: TU135003


Basic Information

Item Value
RNA id TU135003
length 2071
RNA type TUCP
GC content 0.42
exon number 3
gene id LOC110536122
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16203014 ~ 16208363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgcattatttggtgttctacgttgtacatggaggatgtttttgcagaattctgcatgcagagtctcaatttggtgtttgtcccattttgtgaattcttggttggtgagcggaccccagacttcacaaccataaagggcaatgggttctataactgattcaagtattttaaaGCCAGTTCATAATTGGGATGTCAAATTTGATATTCATTTTGATGGCGTAGAAAGCgcttcttgccttgtctcacaGATCGTTCagagctttgtggaagttacatgtggtgctgatgtttaggccgaggtaggtatagtgtttttgtggtcctggcgactggaccttttttggaactcCATTATTGTTGTCTTTTTTTgagagatttactgtcagggcccaggtctgtcagggcccaggtctggcagagtctgtgcagaagatctaggtgctgctgtaggccctccatggttggggacagaagtaccagatcatcagcaaacagtaaacatttgagttaagatctctctgtctctttctcattaCCGTACCAACGACTCAACTTCCTGTCCACCATGGAGCGCCTATGCCAGACCGAAGACGACTTCCTGTCCTACGTCTCCACAACGGCCACTGTGTGCACCCTCCTGTGCTTGGCGCTAGGATACAGCTTCCTCCGCTGGCCCTGTGTCGTTCTATTCTTTCATCTGAGAGGATGGGTGGAGCGACGTgtggggaggaggatgggggaacAGTGGGAGAAGCTGATAGAGGTGAGGTATGATGAGTTTGTGTCGTTCAGCAGTCGTGACATGGCGTGGGTACTGGGAGAGATGGCCCCGATGCTAGAGGGGGAGCCACGACTATGACTGTGTCTGCACCACCAAGactttgaggtgtgtgtgtgtgcgcgggcgAGTGCGTGCTTCaacatgcaagtgtgtgtgtgtgagaatggaGAATATGTGCTATAATAGTACAAACACAAATACATTAGATTAGATTGATAAACAGCACCCAGCCTGTTGTGTCCTGTCCCAGGTAGGGAAGGGCATCGTGGATAACATCGCTGAGAACATCTACTGCAGCAGGAGGACGGTGTGTGTGTTGACCAGACGCTACCTGAGGAGTGACTGGTGTGGCCTGGAGATGAGAGTGGCCACACACCGCCTGTTGTCTGAGCGCAGCCACAGACTCATCCTCATCTTCCTAGAACACATCTCCCCCTTCGAGCTGTCCGCCTTCCACAGGCTTGCTAAGCTGGCCAGAACCCGGACCTACCTGGACTGGCCCCAGGATGAGGACGAGAGGGTAACGTTCTGGGAGCATTTACGACAAAACATTACAGAGAGCGACACAGAGGAACTGCATGATCCTCCAGAAGCATCCTGAAGTCATCTGCATGTTCCACGTGATGTTCTacgtttagagagagagagagtgttcgcTACTGATCTCAGATTAGGGTGACGTCAAGGGACTCCTTTCTGGActgttttttaaataatattttgACGTTGATATCTTTGCCTTCCACTtatcagatgctcttatccagagcgacttacagggttaagtgccttgctcaagggcacgtcggcATATGTTTCACTTAGTcggcccaatgctcttaaacgctaggctACCTTTCTTTTGTCTCCTTTCATTCACTGATTGTTCAATTAACTGTTCTTGGATCTGTGCTGTGTGTATTTGAGCACAAAGACAACATTAATATGCTAAACATTCTCCCatgaaaacaacacatttcaattGGTTAGATGTTGTTTCCTGTATATGACCACTTGTTTTAATACAtgttgctgtcacgccctgaccttagttatctatgttttctttattatttaggTTTTGTGTTGTCTATTGTTTTTGTATGTCATGGGGTGTTTGTAAGCCTAGGCATATGTAGgtttatggtggcctgaatttgttcccaatcagaggcagctgtttatcgttgtctctgattggggaccatatttaggtagccatgtTCCCTTGGGtatttgtgggttcttattctatgtttagttgcctgtctgcactattcgtattagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134982 lncRNA downstream 13386 16189373 ~ 16189628 (-) True G117327
TU134627 lncRNA downstream 27489 16175228 ~ 16175525 (-) True G117041
TU134623 lncRNA downstream 28981 16171188 ~ 16174033 (-) False G117040
TU134992 lncRNA upstream 8619 16214036 ~ 16217352 (-) False G117333
TU134997 lncRNA upstream 8619 16214036 ~ 16217352 (-) True G117333
TU135024 lncRNA upstream 51330 16256747 ~ 16259206 (-) True G117354
TU135001 lncRNA upstream 86413 16291830 ~ 16298545 (-) True G117335
TU135032 lncRNA upstream 96131 16301548 ~ 16301846 (-) True G117362
XM_036939496.1 mRNA downstream 1466 16199987 ~ 16201548 (-) True LOC110536110
XM_036939492.1 mRNA downstream 1510 16199987 ~ 16201504 (-) False LOC110536110
XM_036939499.1 mRNA downstream 1537 16199987 ~ 16201477 (-) False LOC110536110
XM_036939472.1 mRNA downstream 7252 16189940 ~ 16195762 (-) False LOC110536103
XM_036939480.1 mRNA downstream 7361 16189940 ~ 16195653 (-) False LOC110536103
XM_036939503.1 mRNA upstream 12054 16217471 ~ 16245556 (-) False LOC110536154
XM_036939507.1 mRNA upstream 12054 16217471 ~ 16245556 (-) False LOC110536154
XM_036939512.1 mRNA upstream 12054 16217471 ~ 16245556 (-) False LOC110536154
XM_036939517.1 mRNA upstream 12054 16217471 ~ 16245556 (-) False LOC110536154
XM_036939522.1 mRNA upstream 12054 16217471 ~ 16245556 (-) False LOC110536154
TU134980 other downstream 7397 16189951 ~ 16195617 (-) False LOC110536103
TU134981 other downstream 7397 16189951 ~ 16195617 (-) True LOC110536103
TU134469 other downstream 95038 16098572 ~ 16107976 (-) True LOC110534219
TU134485 other downstream 243012 15951610 ~ 15960002 (-) False LOC110518702
TU134479 other downstream 284069 15916233 ~ 15918945 (-) False LOC110518702
TU136192 other upstream 622254 16827671 ~ 16828022 (-) True G118273
TU136239 other upstream 728152 16933569 ~ 16934290 (-) True G118303
TU136262 other upstream 790103 16995520 ~ 16998093 (-) False G118319
TU136270 other upstream 791933 16997350 ~ 16998093 (-) True G118319
TU136361 other upstream 845764 17051181 ~ 17055124 (-) False G118392

Expression Profile