RNA id: XM_036939503.1


Basic Information

Item Value
RNA id XM_036939503.1
length 3512
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110536154
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16217471 ~ 16245556 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACGTCAGAGAATGCCCTTCCCGGTTGGACAAGAGAGCCTGGCTCACGCAAGTGTCAAAGACTCTTCCAAGTTCCGAAGTTGGGTGCATTCAATTAATTTGTCAGAAAGGGATTTACACACAATTGCCATTTATAAGGGAACCACCGCGTTCAGAGGTGCTGGTCAGAGCCACGAGGGGGCAATGTCTGACAACAGTGGTGCTGCCAACAGCAGTAGCTGGACTGTCCTCACAGCTGAGGAGACTGTTGCTGAGACACTGAGGCCTGTAGCGGAGGGAACAGAACACCATGAaaatacacccagtcatactgctgcagagaaacctacaggtacacccagtcatactgctgcagagaaacctacagagAGTAGGCCTGGGGAGGATGCAGTGTCTGCTGAAGAGTCTCACTCTGTGAAGCTACAGCAGGAGACCCAGGAAacacaaccagagagagacaaggaTTACACCCCTGTTGTAGAGAGTCCCACCCATGACCTTCCTTTTGACCCTGCCCCTGACTCCACCCCTGCCCTTGACTCCACCTCTGCTAGTGTTGCTCCTCCGAGCTCTCTGTTAGAAGTCCCCGCCCCCACAGGGCTTGACCCAAATACACACAGCCAATCCAGAAGCCTCCCTGGGaactcagcccctcccatctctgACCCTGATTCGTTCTCTGACTCCTACACCCACATTAGCTCCTCCCCCGATCTTGAAGAGCCCCCTGCCTTGCTGCTCAACACTGAGCCCCCGGAAGAGGTGGGGCTTGTACAGGAAGCGGAGGGGTATATACAGGATGTGCATCATCATTATGAAGAGGGGCTTgggcaggaagaggaggagtctgATCTGTCTGACATCAGGGCCAAGACAGACTCCCATCTGGAAGCggaggtggtgggggaggaggaggaaggggtgtcaggggtgaggaggaggagggggtctcTCCTGGCGGCTCTGGAGCAGATcggaagggaggaggaagaagaggaggaggatgagttCCGGATTCCGCAGCAGAGGGAGCAAGAGGAGACTGGTTTCTCTCTCAACAAGTGCATCCTAGGAGCTGTCATACTGCTGGGCCTCGGAACCATCATcttctcagGTGTCTTCCTGGACCTGGATGGtgCTGTTGTCCTTCCAGAGGGGGACTATGATGCCAGGGAGCTGAGAGAAACAGAGGTGGTGGGAAAACAGGAATGGCTGAATCCTGAGGTTCCTCTTCCACCACCTGTAGAAGTTGACAGTACAGACCAACTGAATAAACTGGCTAAAGAAGACCCACGGATAGCTGTACTGCAAGCCCAACTCCTGgCACAGAAAGAGGAGCTAAAAGTAGCCCAGAAGGAGGcggaggatggagggaaggagagaaagaagagggaggaggtggagagggagcaCGGTAGGCTGAAGAAAGAGATGATGTCACTCCCTGTCCTTCAGAAGGAGAacgagaggatgaagagagagctGGAGTCTGTTCCTGTCTTACAGAAGGATCTAGAGACACTCAGAGCCACAGTGACTGAACTaaaacacagcacagCCAAAGAAGCAGCATCACCTCCAGTCTCTGCCTCTGTCCCGCCCCCCTCTGGCCAAGCTGGGGATGACAGCCAGAACACAGCCGGAACAATAGAGAGGAAGGTCAAGAAACCAGGGAAGGGAGAGAAAACAGAGTTGAAGGAAGAGAAGACGGATTGGAATAAGGGAGGGAAGACGGATTGGAATAAGGGAGGGAAGACTGATTGGAATAAGGGAGGGAAGACGGATTGGAATAAGGGAAGGAAGACGGATTGGAATAAGGGAGGGAAGACTGATTGGAATAAGGGAGGGAAGACTGATTGGAATAAGGCAGGGAAGACGGATTGGAATAAGGGAGGGAAGACAGATTGGAATAAGGGAGGGAAGACGGATTGGAATAAGGGAGGGAAGACAGATTGGAATAAGGCAGGGAAGACAGATTGGAATAAGGGAGGGAAGACGGATTGGAATAAGGGAGGGAAGACGGATTGGAATAAGGGAGGGAAGACGGATTATAAGGTTGAAAAAGAGTGGAGAAGTGGAAAATATGACCAGGAGAAAGAAGGAAAAGAGGAGAAAGAGTGGAAGAAGAAAGAAGACAAGAAGGGAGAATGGAAGAAAGATAAATCTAGCAGAGGGGATGAGGGCAAACCATGGAAGGACAGAGGAAACAAGATGGAATGGAAGGAGAAGAGTGAGAAAAAAGACTGGAAGGTGGAGAAAGATTGGAAAAAGGAAAAACCTGAAAGATGGAGTGATAGCAAGGAGTGGAATGGAGAGAAGAATGGAAAAGAGGAGAAAAATCTAAGGAAAGGGGGTTGGAATGAGGGCAGGGATGAGTGGAAGGGAGAGAAGAATGGAAAAGAGGAGAAAAATCTAAGGAAAGGGGGTTGGAATGAGGGCAGGGATGAGTGGAAGGGAGAGAAGAATGGAAAAGAGGACAACATTCTAAGAAAAGGAGGTTATAATAAGGGCAGGGATGAgtggaagggagagaaggagtggaagaAAGACAAGGATGACTATAAGGACCTTGGCaaaggatggaaggagagaggagagaaaaaggagtggaagggagagaaagattgGACAAAGAAAGACGTCAGTAAAGAGTGGAAGAGTAAGGACAACAGGAGAGAAAATGAGTGGTCGGATGGAAATAGAAAGATGGAAGgattgaaggaggagagaaatggTGGGAACTGGAAAAGGGACAGGGGGAATGACAAGTACGAGAaggaccaccaccaccaccactactctaagGAAgggcagaaagagaggagaaggagagaaaagggccCTCCCCAAACCCACCGAAGACCCCCCCTTGAGCAACCTGACTACTGGAGTTACCAGAGAGAACGACTGCAGCACAAACCCAACCCTCAAACCCACTGCAGTTCAGTGGAGGCCTGCGCTCAGGCAGAGGGGCTGCTCCCTGTCACCATGCCGGAGTTTGAGGCCCTGCTCCTGGGTTACCTGGTCAAGGcagagagggtgggggtggaggCCTCCAAGAGGGAGGAGCTCAGTAAGCTAACCAAGGAGTTCTTCCGTGACGGAGTGTTCGTTCACGACCAGATGAGCTTCAAGGACTttgtggaggatgtggaggacATCTTAGAGGTTAtggtggaggatgaggaggtagaggaggaggtggatgaCTTTGAGGAAGAGGCAATGAACAGGTTTTCAGTtccagggggaggagagagggagaagtggaaGAAGGATAGTGGGAGAGGACGGGTGTGATGGAGTGAGAAAGGGAGTCAACGCATGTCAGGAGGAGCGGAAAGATAAAGGTGGAGGAAAATAGATGGATGTGCTGCAAGGTAGAATTTAAGAGgagcaacacacacatacacacacatacatatatatacactaccacgGTTCAGAAGTTTgaggtcatttagaaatgtccttgtttttgaaagaaaagcacttttttttgtccattttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134992 lncRNA downstream 119 16214036 ~ 16217352 (-) False G117333
TU134997 lncRNA downstream 119 16214036 ~ 16217352 (-) True G117333
TU134982 lncRNA downstream 27843 16189373 ~ 16189628 (-) True G117327
TU134627 lncRNA downstream 41946 16175228 ~ 16175525 (-) True G117041
TU134623 lncRNA downstream 43438 16171188 ~ 16174033 (-) False G117040
TU135024 lncRNA upstream 11191 16256747 ~ 16259206 (-) True G117354
TU135001 lncRNA upstream 46274 16291830 ~ 16298545 (-) True G117335
TU135032 lncRNA upstream 55992 16301548 ~ 16301846 (-) True G117362
TU135087 lncRNA upstream 168162 16413718 ~ 16414705 (-) True G117407
TU135098 lncRNA upstream 185802 16431358 ~ 16433176 (-) False LOC118937848
LOC110536122 mRNA downstream 9108 16203064 ~ 16208363 (-) False LOC110536122
XM_036939496.1 mRNA downstream 15923 16199987 ~ 16201548 (-) True LOC110536110
XM_036939492.1 mRNA downstream 15967 16199987 ~ 16201504 (-) False LOC110536110
XM_036939499.1 mRNA downstream 15994 16199987 ~ 16201477 (-) False LOC110536110
XM_036939472.1 mRNA downstream 21709 16189940 ~ 16195762 (-) False LOC110536103
XM_036934596.1 mRNA upstream 213 16245769 ~ 16247419 (-) False LOC110536166
XR_005034377.1 mRNA upstream 215 16245771 ~ 16247417 (-) True LOC110536166
XM_036939564.1 mRNA upstream 3875 16249431 ~ 16289164 (-) False LOC110536161
XM_036939559.1 mRNA upstream 3875 16249431 ~ 16289166 (-) False LOC110536161
XM_036939546.1 mRNA upstream 3875 16249431 ~ 16289171 (-) False LOC110536161
TU135003 other downstream 12054 16203014 ~ 16205417 (-) True LOC110536122
TU134980 other downstream 21854 16189951 ~ 16195617 (-) False LOC110536103
TU134981 other downstream 21854 16189951 ~ 16195617 (-) True LOC110536103
TU134469 other downstream 109495 16098572 ~ 16107976 (-) True LOC110534219
TU134485 other downstream 257469 15951610 ~ 15960002 (-) False LOC110518702
TU136192 other upstream 582115 16827671 ~ 16828022 (-) True G118273
TU136239 other upstream 688013 16933569 ~ 16934290 (-) True G118303
TU136262 other upstream 749964 16995520 ~ 16998093 (-) False G118319
TU136270 other upstream 751794 16997350 ~ 16998093 (-) True G118319
TU136361 other upstream 805625 17051181 ~ 17055124 (-) False G118392