RNA id: XM_036939665.1



Basic Information


Item Value
RNA id XM_036939665.1
length 609
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110536234
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16889578 ~ 16891184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aataatacgaaatgctctgagaccaggctctCAGACATCGTCTCTTGGAAACACAGGCTAAAACACCCAATCAGATGGGCGTTGCCTGCACGCTTTAAATTCTCGTAGTTGCGCTACTTCCCCACCCTGTTCTCCAGCAGCTCTCAGTTCGtgTGTCAATATCTGCAGCCATGCCATCTGAGCTGGAGCGTTCCATGGAGTCCCTGATCATGGTGTTCCATCTCTATTCTGAAAAGGATGGTGATGGCAACACACTGAGCAAGAAGGAGCTCAAAGAGCTGATGAAGACAGAACTGGCCAGCTTCCTGAAGtcCCAGAAGGACCCAGCCGCCATAGACACGATCATGAAGGATCTGGACCAGAATGGTGATGGGAAGGTGAACTTTGAGGAGTTTGTCTCTCTGGTGGTGGGCCTCTCCATTGCCTGTGAACAGCTCTACCAGCTCCACACCCAGAAGGCTTCTGCCAAGAAGTGAGGGAGGACAGGACAAGGAGAAAGAGAAGCAGAGATGGATGCTTTTCTATATGTCATTTAGCTTTTCTATATGTCAAATAAGTCATTTTATAAATGTCTTACTGTTGTGAATAAACAGTGgctttcccactctc

Function


GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU135320 lncRNA upstream 13723 16871618 ~ 16875855 (+) True LOC110536210
TU135330 lncRNA upstream 35851 16847610 ~ 16853727 (+) True G117609
TU135331 lncRNA upstream 39220 16848256 ~ 16850358 (+) True G117610
TU135329 lncRNA upstream 40324 16843365 ~ 16849254 (+) True G117608
TU135323 lncRNA upstream 60167 16829057 ~ 16829411 (+) True G117602
TU135368 lncRNA downstream 10095 16901279 ~ 16901489 (+) True G117636
TU135370 lncRNA downstream 11718 16902902 ~ 16903245 (+) True G117638
TU135441 lncRNA downstream 135694 17026878 ~ 17055189 (+) False LOC110536287
TU135451 lncRNA downstream 150337 17041521 ~ 17042910 (+) True G117701
TU135437 lncRNA downstream 161330 17052514 ~ 17055189 (+) False LOC110536287
XM_021621876.2 mRNA upstream 10226 16875994 ~ 16879352 (+) True LOC110536226
XM_036939656.1 mRNA upstream 13679 16871542 ~ 16875899 (+) False LOC110536210
XM_036939657.1 mRNA upstream 13679 16871542 ~ 16875899 (+) False LOC110536210
XM_036939646.1 mRNA upstream 122355 16759736 ~ 16767223 (+) False LOC110520867
XM_036961677.1 mRNA upstream 142292 16733333 ~ 16747286 (+) True LOC118936591
XM_021618966.2 mRNA downstream 5116 16896300 ~ 16897824 (+) True LOC110534232
XM_036934598.1 mRNA downstream 21666 16912850 ~ 16917506 (+) True LOC118936967
XM_021621938.2 mRNA downstream 41521 16932705 ~ 16934871 (+) True LOC110536252
XM_036934599.1 mRNA downstream 57247 16948431 ~ 16950598 (+) True LOC118936983
XM_036939680.1 mRNA downstream 78870 16970054 ~ 16972862 (+) True LOC118937935
TU134636 other upstream 703794 16183686 ~ 16185784 (+) True G117048
TU133662 other upstream 1437890 15450468 ~ 15451688 (+) True LOC110535842
TU133604 other upstream 1522789 15355858 ~ 15366789 (+) True LOC110535783
TU133587 other upstream 1551876 15337430 ~ 15337702 (+) True G116224
TU133558 other upstream 1553220 15329582 ~ 15336358 (+) True LOC110535811
TU135335 other downstream 104526 16995710 ~ 16998361 (+) True LOC110536275
TU135454 other downstream 158948 17050132 ~ 17050839 (+) True G117704
TU135467 other downstream 182017 17073201 ~ 17073701 (+) True G117714
TU135631 other downstream 508829 17400013 ~ 17409287 (+) False LOC110520798
TU135611 other downstream 519448 17410632 ~ 17421660 (+) False LOC110520798

Expression Profile