RNA id: XM_021621917.2


Basic Information

Item Value
RNA id XM_021621917.2
length 1374
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110536241
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 16998821 ~ 17001363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGCCGTAGTCCAGCAATCGCCTAGTCTTAGATTAAATCTGCCGTAGAGTCCACCATTTACACAAGCACACGCAACGTAACATGCAAACCAAGGGGGGCCATTGTATAATTTCCTACTAACGAAGAAACCGGAAGTGTGATTGTTTTGTTCTGTAGAAGGTGTTATGGCGGCGCCAGTGGAGGGAATTTCAAAATTGAGCAGATCCTGCTAAATAGAGTTAATCTATCCTCATGTATTAACAGTGAAAACTACAAGAAACGTGTGAGCAGTCATTCGGGGCGCTTCCTCATAACATAACAGAGCCTTCACCCAAAGATAAAGACCCAGACTGGTGACCTAAGATGACCAGAGTAGGTCCCCTGCAGCAGCGTCCTCTAGCAGGGTGCAGTGACCCAGACATCTGGCTGGTCCCCCTGCCTGCCCCGGTGCCCCTGGTCCCTGCTAGCCTCCTGCGGTGCCCAGAACTGGacctgtctctccccctcagcCCAGACCCGCCACGGCCCAACCCGGCTAGCCTGCTGAGAGGACGCAGCCACCGGCAGGTGCGATTTGCCTCCGAGGAGCCTGTGGTTGACACGGTGATAGCAGAGCCTAGCAAAGACCCTCCACCTTGGCAATGCCCTGGACACTCCAGCAGTTACTCAAAGGGGAAAAGACTCCATGGTGGAGAACTGCGTTGGAGGGCAAGGTCAGCAACCAATGAGGAGGCTCCCTGTGAGGAGAGGGGTGGCAGCCTCCCTGAAGGGGCGGAGTTAAATACTACTCTGGCTCTGAGGGCTGAGCTAGATAACGTGGCAGGGGCAGAGTTTAACTCCCAGAAGGCCGTGCAGGAGCAACTACAGAAGTCAGACAGAACCAAGAACAGCATCAGCACCCGGGCTACAGAGGGGGTGAACGTCCCTCCATCCCAGCACCTCTACAGGGCATTGGTCAGTGTGAatgtggtggaggaggagctTATCAGCCAGGCTCTACGTGACAGGCTTCAGCTGGTCTCGCCCACATGCAGCCATGGCAACAAGaaaGAGGACAGTCCTGACCTGCAGGTTTTCTTCAGGGGGGATCTGCTGAGAGAGAAGCCCCTCCTACCAGGGGAGGAGATTACCATACCACGCCCCCAGCCCATCCCACGCCCCGCAGACACAACCTTCGACCTctaccacagacacacatgctGGGAGGCTggaccctgacacacacacacttactctgaACCTCTAGACTGAAAGGCCCTGTCCCAAAACTTAAGAAAAGCATTTTCCCTTctttccctccctacctctgtcATTCTCAGatataaatattatattttaAACTAATTTAAGATATTAAAGGAATAAACCTGTATCATGTTGATGATCGATCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135370 lncRNA upstream 95576 16902902 ~ 16903245 (+) True G117638
TU135368 lncRNA upstream 97332 16901279 ~ 16901489 (+) True G117636
TU135363 lncRNA upstream 104824 16887027 ~ 16893997 (+) True G117632
TU135320 lncRNA upstream 122966 16871618 ~ 16875855 (+) True LOC110536210
TU135331 lncRNA upstream 148463 16848256 ~ 16850358 (+) True G117610
TU135441 lncRNA downstream 25515 17026878 ~ 17055189 (+) False LOC110536287
TU135451 lncRNA downstream 40158 17041521 ~ 17042910 (+) True G117701
TU135437 lncRNA downstream 51151 17052514 ~ 17055189 (+) False LOC110536287
TU135438 lncRNA downstream 51151 17052514 ~ 17055189 (+) True LOC110536287
TU135458 lncRNA downstream 63810 17065173 ~ 17065377 (+) True G117708
XM_021621976.2 mRNA upstream 465 16995630 ~ 16998356 (+) False LOC110536275
XM_036939679.1 mRNA upstream 465 16995963 ~ 16998356 (+) False LOC110536275
XM_036939680.1 mRNA upstream 25959 16970054 ~ 16972862 (+) True LOC118937935
XM_036934599.1 mRNA upstream 48223 16948431 ~ 16950598 (+) True LOC118936983
XM_021621938.2 mRNA upstream 63950 16932705 ~ 16934871 (+) True LOC110536252
XM_036939681.1 mRNA downstream 987 17002350 ~ 17004595 (+) True LOC110534239
XM_036939682.1 mRNA downstream 26408 17027771 ~ 17055189 (+) False LOC110536287
XM_036939684.1 mRNA downstream 26408 17027771 ~ 17055189 (+) False LOC110536287
XR_005035385.1 mRNA downstream 26408 17027771 ~ 17055189 (+) False LOC110536287
XR_005035387.1 mRNA downstream 26408 17027771 ~ 17055189 (+) False LOC110536287
TU135335 other upstream 460 16995710 ~ 16998361 (+) True LOC110536275
TU134636 other upstream 813037 16183686 ~ 16185784 (+) True G117048
TU133662 other upstream 1547133 15450468 ~ 15451688 (+) True LOC110535842
TU133604 other upstream 1632032 15355858 ~ 15366789 (+) True LOC110535783
TU133587 other upstream 1661119 15337430 ~ 15337702 (+) True G116224
TU135454 other downstream 48769 17050132 ~ 17050839 (+) True G117704
TU135467 other downstream 71838 17073201 ~ 17073701 (+) True G117714
TU135631 other downstream 398650 17400013 ~ 17409287 (+) False LOC110520798
TU135611 other downstream 409269 17410632 ~ 17421660 (+) False LOC110520798
TU135623 other downstream 409269 17410632 ~ 17421660 (+) False LOC110520798

Expression Profile