RNA id: TU135438


Basic Information

Item Value
RNA id TU135438
length 2618
lncRNA type sense_over
GC content 0.49
exon number 2
gene id LOC110536287
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17026878 ~ 17055189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGATGCTGAAATTGCCCTGAAGCCATTTTTGAATACACAAACCTtctcattaaaacacacacacacagaatgctcATCATGTAGGAATTGGATCCCAGGAAAGTATTCTGCCATCTTGACAGATACCTGAACAAGGAACATGTTTACGTCACCTGTGTGTTTTGTGTACCTCCTAAAGACATGTGGACATTTCAGACATTGGACAGAATAGCACAAAAAGAACCCTGTAAGATGTTGACCATGTTAAGCTCAATCTGTATTCATTCAATGCTAGCCTAAGCTTTCTGTTCTGCTGATGCCTAACCGTGGGGTCATAACACTGAACTCAGAAGTGCATCTCGATTTACATGTTTTGTGTCTTTCTGTTCTTGAGAAAAGGTGTGATGCTTTAGAAAACACATCGTGATTGTCAGTCTGTAGGATATGTCTATGGTGTTGGTTTAGGTGAGTCTTTGGTTCAATTGATATATCGGTCCTTGTGTATCTGAAGACGCTGCAGTGTTCAGAACGACCTGCAGGGGTCTCCCTCCCACTGAGAAACACTAGATCAGTTCCTATACAACAGGGCTGGCCAGTATTCTAACAGAGGGCCAGTGTGGGTGCAGGCTTTTGCCCCAGCCAAgcagtaacacacctgattcaatatCTGGTGGATGTTATCATTGGATGCTGATGCAACACCACACACATCTTTAAATGCAGTGTTAACCTACAGCAGGGTTTCCCAGTGGTGCAGTAGGAGCTACACGGAGGTATACACCCTAAACCCCACAGAGGTTTAAACAGTGGTGTAGTAGGAGCTACACGGAGGTATACGCCCTAAACCCCACAGAGGTTTAAACAGTGGTGCAGTAGGAGCTACACGGAGGTATACGCCCTAAACCCCACAGAGGTTTAAACAGTGGTGCAGTAGGAGCTACACGGAGGTATACACCCTAAACCCCACAGAGGTTTAAACAGTGGTGTAGTAGGAGCTACACGGAGGTATACGCCCTAAACCCCACAGAGGTTTAAACAGTGGTGTAGTAGGAGCTACACGGAGGTATACGCCCTAAACCCCACAGAGGTttcaataaaggttcaataaaataaatatgcACGAAACCCACTTTTTGTTCAGTGGACATTGGGTATAGTCACTTCTTAATTCCCACTGAtccgtatcaaagtagtgtactggTGGTATAAATGGTATCAAGTATGTggtacaatagagaaagtagcctacacaatcgTAAAGCACGTGTAATATATTCACGTGCGCTGCACACAGCCAAGTTTCAGCTGAATATCATGGCAGTAAGAGCAGCAGCTGGTTGTCCCATGGAGCAGCTCACAGCTGGTAGGGTAGGTaggacttgcctagtaaaataaaggttaaatgaatcAAATCCAGAAACAATGGGTAAGCAAACCAGGTATTGAAACAGTTTGGTCCAAAGTCTTGGTTGAATCTTTGCAGTGCTCAATTCAGTCATTATGTGCTGTTTTGAATGAACATTTCCAAATGCTTTCCCAAGGAAAACTTCctaattaaagctgcaatatgtaactttgtGCAACCAAACaagttcacatagaaatgtcactgtcatcattgaaagcaagtctaataaGTGGTAGATCTATtatatgtgcactatttctatgcttcccattcttaagtttagtttttgcatcttttattttgttttgtacaCCATTTTCAGACGGCTGAAAATACAAtctttttggttatggaaaatgtatTGCAGAGGTTGAGATTGTACAAAGACTATACAATTACCtattgttttgtcacaaactgaaattaggcaaacttagaattttagcaaccaggaaatggcggagccaTTTCGgtatagtgcatctttaaatgtTGACTACAAATTAGGCCTACATTATATAATTATGATTTGTATCAATCTGGAGGGCATTTATTTTGAAAACTCTGCAAtcacatgtactctactgtaggcTTACATTGTAGAGTACAGACACTGCGAGCCACATGGTATTTGGCTAGTAGCTTAATTATTTTAAAGGGCAACTAGACCCtcccaaaaaaatattttatatttttcccAGACCTAAAAAATTGTATCCTTGTGCGGTATAAGCATTGATGTGGGCTTAACATGcatttgttgtttttctatgaaAGATTTTTCTGGCAAAATGATGGTGTACTCACTTCTCCAGGCATCGCTACACCAATGGGTTTTCCTGTATCTGTGAGTGATTTGATTTGGGACCTGAATCTCCAACAGGCTTAGGCTGTTTACACGATGGATCATCATGTCTCACTCCCATAGGCTGCTTCACTTGTCAATCATGTCTCTGCTATCTCGCCCTGTAATCTGCGatatctctctctcaaacactcctctgtctctcatcgTCAACTCTTTATTTAAGTAAGATATTAAGCAACTTCTCTTATCCTACAGTATCTTCACCTGTCTGACAAATCAAGcaaatgagaaaataaaacaaTCTGAAGAAAACCACACAGGGTTGAATTGATGAAAGCTGATGTCATTTAGTAATTTAACTTATTGACTTATTGTAATGAATTGTAACAttattttaaatgaaatgattTATTAATGCAAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135451 lncRNA upstream 9604 17041521 ~ 17042910 (+) True G117701
TU135370 lncRNA upstream 149269 16902902 ~ 16903245 (+) True G117638
TU135368 lncRNA upstream 151025 16901279 ~ 16901489 (+) True G117636
TU135363 lncRNA upstream 158517 16887027 ~ 16893997 (+) True G117632
TU135320 lncRNA upstream 176659 16871618 ~ 16875855 (+) True LOC110536210
TU135458 lncRNA downstream 9984 17065173 ~ 17065377 (+) True G117708
TU135464 lncRNA downstream 13396 17068585 ~ 17072226 (+) True G117711
TU135510 lncRNA downstream 108996 17164185 ~ 17164471 (+) True G117750
TU135532 lncRNA downstream 188220 17243409 ~ 17254914 (+) True G117772
TU135540 lncRNA downstream 209433 17264622 ~ 17286752 (+) True G117780
XM_036939681.1 mRNA upstream 47919 17002350 ~ 17004595 (+) True LOC110534239
XM_021621917.2 mRNA upstream 51151 16998821 ~ 17001363 (+) False LOC110536241
XM_021621926.2 mRNA upstream 51151 16999126 ~ 17001363 (+) True LOC110536241
XM_021621976.2 mRNA upstream 54158 16995630 ~ 16998356 (+) False LOC110536275
XM_036939685.1 mRNA downstream 86475 17141664 ~ 17161398 (+) False LOC110534250
XM_036939687.1 mRNA downstream 86475 17141664 ~ 17161398 (+) False LOC110534250
XM_036939688.1 mRNA downstream 86475 17141664 ~ 17161398 (+) False LOC110534250
XM_036939689.1 mRNA downstream 86475 17141664 ~ 17161398 (+) False LOC110534250
XM_036939686.1 mRNA downstream 88444 17143633 ~ 17161398 (+) True LOC110534250
TU135454 other upstream 1675 17050132 ~ 17050839 (+) True G117704
TU135335 other upstream 54153 16995710 ~ 16998361 (+) True LOC110536275
TU134636 other upstream 866730 16183686 ~ 16185784 (+) True G117048
TU133662 other upstream 1600826 15450468 ~ 15451688 (+) True LOC110535842
TU133604 other upstream 1685725 15355858 ~ 15366789 (+) True LOC110535783
TU135467 other downstream 18012 17073201 ~ 17073701 (+) True G117714
TU135631 other downstream 344824 17400013 ~ 17409287 (+) False LOC110520798
TU135611 other downstream 355443 17410632 ~ 17421660 (+) False LOC110520798
TU135623 other downstream 355443 17410632 ~ 17421660 (+) False LOC110520798
TU135495 other downstream 400576 17455765 ~ 17458022 (+) True G117735

Expression Profile