RNA id: XM_036961687.1


Basic Information

Item Value
RNA id XM_036961687.1
length 4379
RNA type mRNA
GC content 0.53
exon number 15
gene id LOC110520798
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17395343 ~ 17421816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCTGGCGTGCCTTTTCGTCACATGACGACGTGTCGGTTTACAAACACTAGGCATTCCTTTCTTTTGCCTCtatggtgaaggagagagaatggagggttGGGGTGATGGTGAACGGGAAAGAGAAGAATGATCATCAGCAAGGCTCTTTGACTTGGGAAACGGATGTGTGTGAAACTGGAACCGATCGcttgaggcgtgtgtgtgtgtgtgtgtgtgacgtataATTCGGTGCAGTGAGGTAGATGTCCGGGATATACACGAACGGGAGGCCCGCGTGACTGCTgcagggaagagagaagaggacagagggagtgagTTTGTGTGGTCCACCGCAAAACTCCCACGGAGTCAAAAGATGGAAAGAGGAGGAATAGCAAATGAAAACAGCACAAACGTGCGGACGGCTCAAGGAGGATGGACTGTCTATAATATATTTACGTTTACTTTCGACGGATTTAATTAATTTCTTAACCTGAACGGTTTGCCGACAGGACCGATTAAGATCTGATCAAGAGCTATCTCTCTCATCCTTCGGATAGGTCCGGTAGTCGGACCTTCGTGAGGACAGGACAACTCGGGCCTTGTTTCGATGCTTGTTCCTCGTCACCTTGACAAGATCCAGACCCACTCACTGCCCTACGCAATACACGTGGTTTCTCATTACCGTAGAAACAACGGGATATCTGGTGCTTAATAACGGGTGCTGCTACAGGACTGCGGCCTCGGGGCTCCGCCCACCGCAATGCTATGGGCCTTGGGAGGTAGAGATATTGAGAGAAAAGAACAGAGGAACGGAGCTGTGTGTCGTAAATGCATTCAGGTTCTCAAGGATTAGCCCTAGgtattttttcttatttttctcctCACGTGAACATGTTGAAGTTTGTCTGGGGTGCAGATGTAATAGGACATATACACTCTGCTAAGCAGCTATTGCTGTTTTCATATGCTAAATAGCCCAGTCTTCTGAGTTGAGAGTTTTTGGAAACTGCACTGTGGCGTGTCAGGATCGAACCTTGGGGATTGCACAACGGGCTTTGTCATCTGCCAATTGACAACGCAGGGCCAAAGTGAAAAGGGGGTGATTTTTTACAAAGCAAccaactctccatctctcctacacacacacacacacacacacacacacacacaccgcatataggcctacacacacgcacacatacacaggctCACCActctccacacatacacacaccaaccaTGCCATCCCCGTCAGACTCCAGCAGTGTAGTGTCAGCCTCTGGGTCTAGGGGCTGGTCAGATAGCTGCCGGGGCATGTCTGGCCGTCAGGGTGGGGCCAAACTGCTGCTGTACCTGGGGCTGTGCCACCTGGGCCTGGGGGCCATGGTCCTGGCCTTCTCCTTCACCAGCATGGCCTTCACATCCTCAGCCCGCGTCCGACAGTCCTGCCCCTTCTGGGCCGGCTTCTTTGTTGTGGCATCAGGGTTAGTTGGACTTATCTCATGGAGAAGACCACTCACTCTTGTGgTGTCCCTCTTCATGCtgctgtctgctgtgtgtgtcatCCTTAGTCTGGCTGGATCCATGCTCTCCTGTCAGAACGCACAGATGGTCAAGTCACTCCTCACCTGCCAGgTGGAgaatgggttgtgtgtgtgttgcgccCCAACACACTCCTGCTCTATAAACGAGGAGGAGACCCTGGTACTCTACCTAAACGCAGACTGCCACTCTGTCAGACATCAGCTCAagGATCTGTTGTTCAGTGCTTGTGGTCTGAGTATTCTCTCTACCATCATCTGTACTCTCTCTACTGTCACCTGTAGTATACACATCTTCTCCCTGGACCTAGTGCACCTGCTCGCCCCGCACCGCTCTCGCTCCGTCAACCCAGAATGCACCACTCCTCAGGACGCCTTCCTGACCAACATCATGGACTTTGAGGAGTTTGTCCCGCCCATCCCTCCGCCCCCCTACTACCCCCCTGAATACACCTGCAGCTCTGAGACAGACGCACAGAGTATCACCTATAACGGGTCGATGGAGAGTCCAGTTCCTCTGTACCCCACTGACTGTCCCCCTCCTTACGAATTAGTGATGGGGCAGAGAGCAGCTAGCCAGGCCACGGTGTTTGACAGCCATGGGAATGAGCTGTCTGGAGAGAGGGCCACATCCACTGCCTTCAGCGGAGAGGtctccATGGACAGTGGTTCTCTGTTGATGTCGGAGATCATTGACATCCCAGACGACTCCTCACCTTCAGAGGACTCCGGCCttgtgggggtgggggtgagggctaggggggagggaggggagtaTGTGAGCTTCCGTGGCCCCCCTCCCCAACCCCCGGAGAGTCCCCTGGTAGAGAGTCCCCTGATGGGCCCCAGGGCCAGGCGATGCTACAGAGGAGAGAGGTCCAACTCCTGCTCCTCATCTAGCACTGCTACAGCTACATACAGGTCTCCAGTGTTGAGGCGACAGGCTATGTTGGCCAGTAGTTGTTCCCAGTTGGAGCTGCTAGGGGGCGCCACCTCTCACCAGCGCTCCTCTATCCTAGAGAAACGAGTCGGGCCTTGCACCCCTTTACGACGCggttctgcctctgcctctgcagCTCCTCCCACTTCCTCATCCTCAGCTGTCAATCAGCAGGGTGGTCACGGCAACGGCATACCCCTTCCCCTACAGCCGTTGTACTTGCGTCGTCAGGGCGGAAGGAGCGAGAGGGGGGATAGTGACGGGCTTCTGCCCCTAGTGAGGTCACACAGCGAGCCTGGCCTCAGCTCTTCTGCTGATACAGTTGACTTCAGTGGTGGCTCAGTGGGCAGTAAAGGAGTGAGGGAGGGCTCTCAGACCTCTACAGACACAGGTCCGGCCTCCGAGGCATGCCTGCTACCCCGCTCCTCTCTGGTGCCCCCCTCAGCCCTCCTCCCCAGGAAGGGCAGTGTGAAGGCAGCCACCATGGGGCGCACCTTGCCCCTCTCCAAAGGCCCTGCCAACTCTCCCTTGCACCTGCCCAAAGAATGCAACCGCTCTCTTGGGGACCTCAAGGTGACGAGGGGGTTGGTGGCTCGCTTCCTGCAGCGCTCCAAACGGAACCTGGCGTCCGCTGCAGAGAATTCTGGGAACACGGGACAGGGTCAGAAAAGGAGAGGCGGGGTGGAGGGCAACGGGACAGGCCATCTCCCTTTAgagcaggTGTTACGTAACTCCTGGGGGGCCAGCCAGGGATCCCACCCGCCACACCCTCATCACCGTGGTCACCACCACTCCTATAGCGACAGCCGCCACAACCGCCGTCATTGCAACCAACCCCCTGTGACGGAGGGGATCCACTTGCGCAGCTGCGGCGACTTAAGCTCCTCCTCCTCTGCGTCGCTATGGCGATTACTGACGGCCAACCCCCCTCACGGGTCATCAGGGGCACTGTACACAGAGTCAGCCCTgtaagagggagaggaaggatgaaGGAACAGGCTACTGACATATCCTGATGGGCGGTGGAGGGAGTCAGCATTATGAGGAGGGAACGACTGGACCTTTGCTACAGCCTTGTTCCAATACTTTCAACATGCATCctacctctttcccttcctccttccccttGGAGCCCTCCTCTGCACCTGCGCCTGGCCTTCCTTTCCTGAACTTTGACCTCTCAACTAACCTCCTACCTTCAACCTCCACCTAGCCATGCTGAACACAACTCTCTGGGATCTCTCTTTAACTTCAAGactagagaggatggagagaaggagtagGATAATGAAGTTTCCCCTAGACTCTGAGCTATGGTCAGTTTAGTGTTTCTcctcctaatggttaaggttaggatcagTGGAGcataagctgatcctagatctgtgtctaaGGTAAACACTTTTCTGGAGCTGTGAACATCACTCTTATACGAACCGCATACACTCATTAAACTGCTCACTCTTTTTCAAAACTCAAATGTACGTTCATTTGTCCAGCTCTTCATCCGGAGCGAAATTCACTAAGTGTTCACGGAACTCACCTTTTTGTCTTCCACTCGTGAAATGGTTAACCTTCCTTTTTTCCTGATGACACTGTAAAATGTACAGAACATTTTTTTTTGCCCACTGACAGTGAAAGTTTAATGGCCTGCTAGTGTCGCCGTATGTTTACAAACTTACATCTTTATTAGTCTTTTTTTTGTGGTTCATTTTCTTGAGGTAAAATCAAAATGTAATCCTCAACACCCCTCATCTAGTCCATCTCCAATCTGCCTTCAGAAGAAAGGTGCctcaaactcaaaactcacacaccatctaccccaaactcaaaactcacacaccatctaccccaaactcaaaactcacacaccatataccccaaactcaaaactcacacaccatctaccccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135485 lncRNA upstream 12772 17378012 ~ 17382571 (+) False G117728
TU135484 lncRNA upstream 12854 17379455 ~ 17382489 (+) True G117728
TU135486 lncRNA upstream 14133 17378012 ~ 17381210 (+) False G117728
TU135487 lncRNA upstream 14133 17378012 ~ 17381210 (+) False G117728
TU135488 lncRNA upstream 14981 17378012 ~ 17380362 (+) False G117728
TU135644 lncRNA downstream 29002 17442891 ~ 17443612 (+) False G117842
TU135645 lncRNA downstream 29002 17442891 ~ 17443612 (+) True G117842
TU135683 lncRNA downstream 86049 17499938 ~ 17500230 (+) True G117864
TU135684 lncRNA downstream 86757 17500646 ~ 17501204 (+) True G117865
TU135710 lncRNA downstream 122631 17536520 ~ 17543637 (+) True G117883
XM_036939700.1 mRNA upstream 553 17383063 ~ 17394790 (+) True LOC110520882
XM_036990388.1 mRNA upstream 72924 17169568 ~ 17322419 (+) False LOC100135972
NM_001124312.1 mRNA upstream 74827 17171041 ~ 17320516 (+) True LOC100135972
XR_005035392.1 mRNA upstream 79516 17311128 ~ 17315827 (+) True LOC110520897
XR_005035389.1 mRNA upstream 79528 17311128 ~ 17315815 (+) False LOC110520897
XM_021598292.2 mRNA downstream 8167 17422056 ~ 17425996 (+) True fdps
XM_036939706.1 mRNA downstream 12543 17426432 ~ 17452486 (+) False rusc1
XM_036939710.1 mRNA downstream 12543 17426432 ~ 17452486 (+) False rusc1
XM_036939711.1 mRNA downstream 12543 17426432 ~ 17452486 (+) False rusc1
XM_036939715.1 mRNA downstream 12543 17426432 ~ 17452486 (+) True rusc1
TU135467 other upstream 321642 17073201 ~ 17073701 (+) True G117714
TU135454 other upstream 344504 17050132 ~ 17050839 (+) True G117704
TU135335 other upstream 396982 16995710 ~ 16998361 (+) True LOC110536275
TU134636 other upstream 1209559 16183686 ~ 16185784 (+) True G117048
TU133662 other upstream 1943655 15450468 ~ 15451688 (+) True LOC110535842
TU135495 other downstream 41876 17455765 ~ 17458022 (+) True G117735
TU137226 other downstream 1043469 18457358 ~ 18476354 (+) False LOC110536658
TU137225 other downstream 1062535 18476424 ~ 18477134 (+) False LOC110536658
TU137398 other downstream 1219950 18633839 ~ 18636041 (+) True G119153
TU137405 other downstream 1256624 18670513 ~ 18672320 (+) True G119160

Expression Profile