RNA id: TU136544


Basic Information

Item Value
RNA id TU136544
length 2576
RNA type TUCP
GC content 0.41
exon number 3
gene id LOC110520799
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17455727 ~ 17484284 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAGAGTGTGCCGTGTGTTGCTTTCAGCTTGTTTGAGACTGCTGTAACCTTCTACTCAGTGCTTCTACTACAGGCGCTTTCCGCTCAGAAGCCCCCGTTTTGTGAATGGGCTTCAGTCCGCTCTGACTTCAACCGTGCCCGGGTAGCGCAAAGAACGAATTCAGATATGCAAACAGGTAACTGCTTGGGAAAGAAGGGCCAAGAGAAAGCCAGGCTTGATATGTCGTCgccattttgttagttttttttatataattaTGTATTTCTAAATTATTTAGGCTATTTTGTGAACATAAGTTTttagctacttttaaaaatcatTTAGATGCACATTGAACTGTTGAGGTATTTTATTATTTCGGCCAACTGCACATATAGCTTCTGAATACATTTTCTCATGAAAGTTGCCTTTGCTAAGAGATTGCTGGCGTATGTGCTCATCATTTATTACGAGTGAAGCTCGCAACGATGCAATCTAATAGAAAGCCTAGCTGTCAACAATGTTTTGGCACAGAATGACGCAGCCTCACGGGGGGCGTTCACCGTTCTCGAGCACAGTGCACGATCTGATCAGTCTGAAGGAAACAATGTAGCCTAACTTTCCCTTTTCCTGGCTGGCTGAGAAAcagttacaaaataaactaaacaAAACTGGCCCGCGAGTGATAACCCACCTCCCCCATTTTTTATTACAAAATAAAACATAGGATTttgtttatgtaaaaaaaaaaaaaaaaaaaaaatgacaaggAATTCAGCTACACATTTGTTTAATTTAGGAAATACGTTCCCAAGTATACCACAAATTAAAAACGGGACATGTCTTTTGTATGTGAtcatgtctcaatgtaatcaaggtatgaaatgaTTGTATTTTGAAAATAACAATCAATTATTGGTATTAGTTGTGGTGAATTTGCAGCATTATTATAATGATGTCCCGGCCCATAACCATCGActccgcggctgaatctagttgccttcGCCTGCAGTACTGTAACTAGCTCTCCACCTAGCTGTCGAGACAAGTTACTACGGAGAATGCTGCTGTAGTGTCTTCAACCGAGCGCTATGAAAACCGCCGCGCAAATGTTGTTCTCTTCTGTATCCAGCCAGCCTATGCGTAGGGTTTCCTAGGAGGAGTAGGCCTAGCGACTTTAGTTATGTAACCAAACCAATATCTGAATACAGTGCATGATTGTTGACGGTTGTCGAGAGGATAGGACAGTATCACCAAGCTCTCTTATCTTCTCTAATGTAGACTAAACGCAGTTCTGGGACGCGCACGCTGGTTCaagtctgactgactgacagacagacagagagggacaaagCGCTGGACAGTTGGGTCAAGAAAGCCTTTTGATATTTAATCTCTGGACAATACCTGTTCCCTTCCACCCTGGGTgctgccccccccacccctcccccctcacatCTCTGATGGACCAGAGAGCGAAGGGGGGCCCATCTCTACCTCCACCATCCTCACTGCCTCTCCTCCCCACAGCCCCACCACAGCAGTACCCAGAGAAAGAGGTAGGCGGTGGGacgaggaagaggacagagaaggaaGGAGGTGGTGCAGTACTGGAGGTGCTCATTGAGGGGTGCTGTGGTGCTGCAGGGCAGAGACAGCTCCCATTCCCAGGCAGAGAGAGGAGCTGCACTGAGGGCAATGTGAGGCTGAGGATCGGAGTCCAAGCGGCCAAACGCACCAAGAAACCCCCCAGGACCCTGGAGGGCTACGAGTGTAAACCCACCATCAGGACGTACCAGAGGCCTGGGAGGGGGAGTCAGGAGGTAGGGGGGAGTGGGCAGGGGAACCGTCCTCAGGAGGAGGGGGACGGAGAGCAGAACCAGGGGTCAGACCCCAGCACCACCCAGACCAGGAAGATACACTCCTCCCTGCCTccgtcttcatcatcatcatcatcagccccTACAACCACCCCTCCCAGCCCAGCCAACCCTCAGACTGCGCCAGCCAAACAGCAGGTCCCTGTGAACCTGGGCTATAAGAAGTCAGACACCCTAACGGAGAAACCAAGGCACCCTGACCCACCTGATGCCCACAGCAAACTACCTTCACCTGCCCAAATGAACCAGGCAATCGCCTCTGACCCCACAGCTTCATCCCCCCattccccccctccctcatcaCCCCATTCCCCCTTGGTAAAGGACCCTAGCGGTGAGGGAGGCATGCTGAATGGGGGAGTACCTACAGTCACCTGCCATCCTACCAGACTCACAAAGGTCAAAGGTCGCAAACAGAACTGTTCTTCCTCAGCCGCCCCCACTAACGTGAACTCAACAACAAGACCTCCAGCCTCCAGCCCCCATCAGGCTGACCTTGCAGCCCAGGACAGGACTACAGGCTTCAGCTGCCCTCCTACACCACCTCCATTCACAACCCTACTTCCAGACCAGAGAGGAGCCCCAGTGGCTGATGGGAGACTGAGTCCTGCTGCCTCCCTCACCAGCCTGAGCAGGGGACCATTACTACCGTCCTCTGTGggaaatgagagagggaaggaggagaaagccaagaagaagaaagagaaagatgaCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136537 lncRNA downstream 18819 17448699 ~ 17454715 (-) True G118521
TU136573 lncRNA downstream 66132 17406659 ~ 17407402 (-) True G118551
TU136571 lncRNA downstream 71594 17401548 ~ 17401940 (-) True G118549
TU136528 lncRNA downstream 90944 17378012 ~ 17382590 (-) False LOC110520880
TU136529 lncRNA downstream 90944 17378012 ~ 17382590 (-) True LOC110520880
TU136543 lncRNA upstream 11864 17496115 ~ 17496337 (-) True G118527
TU136594 lncRNA upstream 13904 17498155 ~ 17498423 (-) True G118572
TU136599 lncRNA upstream 17360 17501611 ~ 17502846 (-) True G118575
TU136602 lncRNA upstream 21054 17505305 ~ 17505774 (-) True G118578
TU136607 lncRNA upstream 40312 17524563 ~ 17532233 (-) False G118582
XM_021598326.2 mRNA downstream 90850 17378012 ~ 17382684 (-) False LOC110520880
XR_005039482.1 mRNA downstream 92146 17381253 ~ 17381388 (-) True LOC118944170
XR_005039483.1 mRNA downstream 92579 17380819 ~ 17380955 (-) True LOC118944171
XM_036939693.1 mRNA downstream 331966 17073218 ~ 17141568 (-) True LOC110519673
XM_036939694.1 mRNA downstream 352211 17094247 ~ 17121323 (-) False LOC110534246
XM_021598295.2 mRNA upstream 30833 17515084 ~ 17523081 (-) False rnf115
XM_021598294.2 mRNA upstream 30833 17515084 ~ 17523082 (-) True rnf115
XM_036939768.1 mRNA upstream 48436 17532687 ~ 17603672 (-) True itga10
XM_021598320.2 mRNA upstream 139883 17624134 ~ 17636768 (-) True crabp2a
XR_005035401.1 mRNA upstream 178942 17663193 ~ 17666667 (-) False LOC110536309
TU136508 other downstream 141506 17331115 ~ 17332028 (-) True G118494
TU136451 other downstream 221258 17244124 ~ 17252276 (-) False G118456
TU136453 other downstream 221258 17244124 ~ 17252276 (-) False G118456
TU136456 other downstream 221258 17244124 ~ 17252276 (-) True G118456
TU136386 other downstream 378418 17094334 ~ 17095116 (-) True LOC110534246
TU136678 other upstream 181079 17665330 ~ 17666566 (-) True LOC110536309
TU136666 other upstream 197771 17682022 ~ 17710023 (-) True G118606
TU136791 other upstream 425242 17909493 ~ 17919751 (-) True LOC118938160
TU136786 other upstream 515222 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other upstream 515222 17999473 ~ 18003296 (-) True LOC110536375

Expression Profile