RNA id: XM_036939752.1


Basic Information

Item Value
RNA id XM_036939752.1
length 1713
RNA type mRNA
GC content 0.52
exon number 12
gene id dap3
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17484825 ~ 17495968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGCTAGCTATTGAGTTTAGATTACATTGCTAGTCCTAATAACATAGTCATTATTTTACAGTGAAGGTCGCCCCTGCAATAGTACAGATGGCACCAGTGTAACTGTGTAAACTGACCTGGGTTTATGTACTTATTCATGTTCCAGACCATGGCCCTTCACAGACTATCCTTGAGATTACGACAAACGGTAGCGCAGGTGCGGCCGCTCCATGGCAGTGGGTGTGGCCAGCAGCAGGAGGCGATTGGCATGGAGACGAGACCGGAGACATTCTCCATCTTCAGAACACAGGAGAACGACCCAgCCTGTCAGTCAGAACAGCACCTAGGGCAGTACTACACTGTGCCCCCCTCCCACTTCCACACTGTCTTCCCCCATGGCCTGCCTCCACGATACCAAcaacagGTGAAGACGTTTAACGAGGGCTGTGTGATGGTGAGGCAGCCTGCTCTGGAGCTGATATCTCACCTGAAGAGAGCTGACTACAGCAAGCCCACCCTGCGCTACCTACTCTATGGGGTGAAGGGCAGTGGGAAGACCATGTCTCTCTGTCATACTGTCCACTACTGCTCCACACAGGGATGGCTAGTACTACACATACCAGATgCCCACCTGTGGGTGAAGAACTGTAAGGAGCTGTTGCCCTCCTCCTACCACGCCTCCCGCTTTGACCAGCCAATACAGGCCTCCAACTGGCTACGCAACTTCAGAACCACCAATGAACACTTCCTTTCTAAGATCAAGTTGAGGCAGCGGTACGTGTGGACTAAGCGAGAGAGCACTGAGGAGGGACGGCCACTAGGGGAGCTGGTGGACATGGGAGTGTCTCGTGTGAAGAGCAGCAGTGATGTGGTGGGGGCAGTTCTAAAGGAGCTGAGGCTACAGGCTGGGGGGACAGAGGGGGGCTTCAGGCTGGCTGTGGCTGTTGATGGAGTCAACGGTCTCTGGGGAAGGACCACGCTCAAGAAGGAGGACAAGAGCCCTgTGGCTCCAGAGGAGTTGACGTTGGTTCATAACTTGAGGAAGATGATCAACAATGACTGGtgtggAGGGGCGGTCATCGCCACTCTGTCTCAGACAGGATCTCTCTACGCTCCAAGCTCTGCCTACCTGCCCCAGGAGCTGCTGGGAGAGGAGGGCTTTGACAGCATGGACCCGTTTGTCCCAGTACCAGTCTCCCTCTACAGTGAGAAGGAGTTTGAGAGCTGTTACCTCTACTACCTGGACCGCCACTGGCTACAACACCCACACAgtcagacagaggaagggaagaaaGAACTGATCTTCCTCAGCAACAGAAACCCTTCTGTACTGGAGAGACTGTGTGCCTTCCTGTAACATCACACATGGGCCCACACcctcccactcacacacacccataaTCATGGACAAACCatatagatagaggactcatctttatatCTGTGCCTTTACagcatctgtgacagcatgggcagtgccattgaggctacaacccataggaatccccactcAGTTGACTACTATAAGATGGTGGAAGCCTTCGATGGTGCTGCCCACACAACATCAAGGCCACTAgcggcctctatcattctctatgggacAACCGCCAATACAGACTCATACATAACTACAATGTTATATtccatgtatatgtgtgtgtccccCCATAAATTATTCTGTTGTGATGCATGATAGTGTGTCTTTTTCATAATAAAAATGTACATGAAAAACA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
K17408 DAP3, MRPS29; small subunit ribosomal protein S29

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135644 lncRNA upstream 41500 17442891 ~ 17443612 (+) False G117842
TU135645 lncRNA upstream 41500 17442891 ~ 17443612 (+) True G117842
TU135621 lncRNA upstream 63452 17412955 ~ 17421660 (+) True LOC110520798
TU135617 lncRNA upstream 63605 17412955 ~ 17421507 (+) False LOC110520798
TU135683 lncRNA downstream 3970 17499938 ~ 17500230 (+) True G117864
TU135684 lncRNA downstream 4678 17500646 ~ 17501204 (+) True G117865
TU135710 lncRNA downstream 40552 17536520 ~ 17543637 (+) True G117883
TU135784 lncRNA downstream 164816 17660784 ~ 17661055 (+) True G117943
TU135755 lncRNA downstream 187719 17683687 ~ 17684278 (+) False G117926
XM_036939706.1 mRNA upstream 32626 17426432 ~ 17452486 (+) False rusc1
XM_036939710.1 mRNA upstream 32626 17426432 ~ 17452486 (+) False rusc1
XM_036939711.1 mRNA upstream 32626 17426432 ~ 17452486 (+) False rusc1
XM_036939715.1 mRNA upstream 32626 17426432 ~ 17452486 (+) True rusc1
XM_021598292.2 mRNA upstream 59116 17422056 ~ 17425996 (+) True fdps
XM_036939779.1 mRNA downstream 10607 17506575 ~ 17515027 (+) False gba
XM_036939785.1 mRNA downstream 10608 17506576 ~ 17515027 (+) True gba
XM_036939811.1 mRNA downstream 27116 17523084 ~ 17532237 (+) False polr3c
XM_036939797.1 mRNA downstream 27117 17523085 ~ 17532237 (+) False polr3c
XM_036939802.1 mRNA downstream 27117 17523085 ~ 17532237 (+) True polr3c
TU135495 other upstream 27090 17455765 ~ 17458022 (+) True G117735
TU135611 other upstream 63452 17410632 ~ 17421660 (+) False LOC110520798
TU135623 other upstream 63452 17410632 ~ 17421660 (+) False LOC110520798
TU135631 other upstream 75825 17400013 ~ 17409287 (+) False LOC110520798
TU135467 other upstream 411411 17073201 ~ 17073701 (+) True G117714
TU137226 other downstream 961390 18457358 ~ 18476354 (+) False LOC110536658
TU137225 other downstream 980456 18476424 ~ 18477134 (+) False LOC110536658
TU137398 other downstream 1137871 18633839 ~ 18636041 (+) True G119153
TU137405 other downstream 1174545 18670513 ~ 18672320 (+) True G119160
TU137542 other downstream 1463168 18959136 ~ 18961465 (+) False G119245

Expression Profile