RNA id: XM_036939785.1


Basic Information

Item Value
RNA id XM_036939785.1
length 2475
RNA type mRNA
GC content 0.52
exon number 12
gene id gba
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17506575 ~ 17515027 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCAGTCAGTTTGAGTAGTGCCTGTGTACGTTGGGTCCGGGTTGGTGGATGTTGGTGGGCACTATATTCATCCAAATACACTTCAACTTGATTATTTCATGGAAAATGATCGTCCCGAACTGTTTGTGCTAGTTAACTAGCTACGTGAGTTTCAGTGGCTTTGCAGGCTCGTTACACATTGGTTACACTACTATGGTGGGCAGTGTTCCCAACCTTGTATTTGTCACTGGCGACCTCTAGCGGTAAACTACAATTTACATTGAAGTGACGTACCATAGTGCGCTTGTCATATGACTATCGAGGTCCATACAATTTTGAACAATCCGGAAATAGCAGAGAAAATCAGTTGGACATGCGACTCAATATTTGACGTGCACTTTATGTCAAAGATCCTGATAAAAACTAGATAGAATGCCATTGTCAACAGCACTCATCCCTCTCGCTTTGTTCATTGGAGTAGCAACACGATCCAGAGGCAGTGATGAGTGTGTGGCCCGTAACTTTGGCCATGGCTCGGTGGTGTGTGAGTGTAACTCCACCCACTGTGACAGTATTGGGTCGGGCACACTGCCTGCACTGGGTCAGTTCCTGTCCTTCACCAGCAGTAAGGCTGGCAGCAGGCTgcagagaggacagggacagGTACAGAAGAACAGCACTGGAGCAGttCTCAGGCTGACTGTGGTTCCCTACCAGAAGTACCAGAGGATCAGAGGGTTTGGAGGAGCCATGTCAGACTCCGCTGCCATCAAcatcctgtctctgtcccccagAACACAGGACCAGCTACTACGACAGTACTTCTCTGCTCAGGGTATTGGGTACAGTGTGGTGCGGGTGCCCATTGCCAGCTGTGACTTCTCAACCCATCTGTACACCTACGCTGACTCACCTGGCGACTACAACCTGGACAACTTTACCTTATCACCAGAGGACACGAACATGAAGATCCCACTGCTGCAGCGAGCCCAGGCCCTGTCGCCCCGCCCCCTGTCTCTGCTGGCCAGTGCCTGGAGCGCCCCCGCATGGTTGAAGACCAACGGTGCTCTCACTGGCAAGGGCTCTCTGAAGGGCCAGCCTGGGGGCAAGGAGCACAAGACCTGGGCTAAATACTATGTCAGGTTCCTGGAGGAGTATGCCAAATACAACCTATCATTCTGGGCCGTGACCACAGGCAACGAGCCCTCTGCTGGACAGATGACCAACTACAGTTTCCAGGCTCTGGGCTTCACAGCAGAGGAGCAGAGGGATTGGGTGGGCCTGGACCTTGGCCCCGCCCTACACACctccacacacccccacacacacctcctcatccTGGACGACAACAGACTGCTACTGCCACACTGGGCTAAAGTGgtcctcagtgatgtgcgTGCTGGCAGGTATATCCATGGTGTTGGAGTCCACTGGTACCTGGACACCCTGGTGCCGGCAGAGCTCTCCCTGGGCACTACCCACCACCTGTACCCAGAATACTACCTGTTTGGAACGGAGGCCTGCGCTGGCTGGAGCCCCTCAGACAGAGGAGTACGGCTGGGCAGCTGGGAGAGAGCTGAGCAGTACGCACACAGCATCATACAGGACCTGAACCACTATGTGGTGGGCTGGACAGACTGGAACCTGGCTCTGGACCAAGGAGGAGGGCCCAACTGGGTGAAGAACTTTGTGGACAGCCCTATCATCGTGGACCACAGCCGAGACATCTTCTACAAACagcccaccttctatagcatggcccacttcagTAAGTTcctgtgggaggggtctcagaGAGTGGGTGTGTCCTTCAGTCAGGAAACAAAACTGGAAAGCTCTGCCTTCGTCAGGCCAGACGGGTCAGTGGTGCTTACCATCCTCAACAGgttgtCGTCAGAGGTCCAGTTTGAGGTGTATGATCCTGCTGTGGGTTTCATCTCCTCCAGTGCTCCAGCCCACTCCCTGCTCACACTCGCTTGGAACACACTCTGACCGCACTGGAATGGAACACACACCTTTACTGCCAGGGCCAAAGCATTGTCACAGTCCTCACTACCAGGTCTGCTACATTTCCACCACTACACACTCAACTCCCACCACCATCCGAAGCCCAATGTGCTGCCTCCTCAGAACAGCATATCTAATAGATAACCTGCAGCATCGTGGGCTCTGGCATTTCTGGGATCAGAgcttgaaatgtgtgtgtgttttagccaaTACAGCCAAATATGTTGCGTGTTCCTATGCTGTGACTATCTGCACTGATCTTTATCACGCTGGGAGAAGCTCTGGAATGTGTGAATATAGCATGTGATCAAACCAGGACCAGGTACACTATCTACTATGATCAGACACTGCTGCTGCTTGAGACGGTCTGACCATTACACTGCTAACAACCGTTTCTAAACTGAAATCTGGTTTAGAAAAGAGATCATGTACCGAATCTATTAATGCCGTTTAAACCATTTGCCTTTTGAATAAATGATGTCTCTCTA

Function

GO:

id name namespace
GO:0006665 sphingolipid metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0004348 glucosylceramidase activity molecular_function

KEGG:

id description
K01201 GBA, srfJ; glucosylceramidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135684 lncRNA upstream 5372 17500646 ~ 17501204 (+) True G117865
TU135683 lncRNA upstream 6346 17499938 ~ 17500230 (+) True G117864
TU135644 lncRNA upstream 62964 17442891 ~ 17443612 (+) False G117842
TU135645 lncRNA upstream 62964 17442891 ~ 17443612 (+) True G117842
TU135621 lncRNA upstream 84916 17412955 ~ 17421660 (+) True LOC110520798
TU135710 lncRNA downstream 21493 17536520 ~ 17543637 (+) True G117883
TU135784 lncRNA downstream 145757 17660784 ~ 17661055 (+) True G117943
TU135755 lncRNA downstream 168660 17683687 ~ 17684278 (+) False G117926
TU135758 lncRNA downstream 168660 17683687 ~ 17686455 (+) True G117926
TU135804 lncRNA downstream 207734 17722761 ~ 17723043 (+) True G117959
XM_036939755.1 mRNA upstream 10608 17484825 ~ 17495968 (+) False dap3
XM_036939761.1 mRNA upstream 10608 17484825 ~ 17495968 (+) False dap3
XM_036939764.1 mRNA upstream 10608 17484835 ~ 17495968 (+) False dap3
XM_036939752.1 mRNA upstream 10608 17485112 ~ 17495968 (+) True dap3
XM_036939715.1 mRNA upstream 54090 17426432 ~ 17452486 (+) True rusc1
XM_036939811.1 mRNA downstream 8057 17523084 ~ 17532237 (+) False polr3c
XM_036939797.1 mRNA downstream 8058 17523085 ~ 17532237 (+) False polr3c
XM_036939802.1 mRNA downstream 8058 17523085 ~ 17532237 (+) True polr3c
XM_036940059.1 mRNA downstream 501768 18016795 ~ 18047915 (+) False LOC110536418
XM_036940051.1 mRNA downstream 501770 18016797 ~ 18047915 (+) False LOC110536418
TU135495 other upstream 48554 17455765 ~ 17458022 (+) True G117735
TU135611 other upstream 84916 17410632 ~ 17421660 (+) False LOC110520798
TU135623 other upstream 84916 17410632 ~ 17421660 (+) False LOC110520798
TU135631 other upstream 97289 17400013 ~ 17409287 (+) False LOC110520798
TU135467 other upstream 432875 17073201 ~ 17073701 (+) True G117714
TU137226 other downstream 942331 18457358 ~ 18476354 (+) False LOC110536658
TU137225 other downstream 961397 18476424 ~ 18477134 (+) False LOC110536658
TU137398 other downstream 1118812 18633839 ~ 18636041 (+) True G119153
TU137405 other downstream 1155486 18670513 ~ 18672320 (+) True G119160
TU137542 other downstream 1444109 18959136 ~ 18961465 (+) False G119245

Expression Profile