RNA id: XM_036939797.1


Basic Information

Item Value
RNA id XM_036939797.1
length 1998
RNA type mRNA
GC content 0.54
exon number 14
gene id polr3c
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17523084 ~ 17532237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCAACTCTTTGGGAAAATAAGCTTACCTGTGAGGGCGGAAATTCGTTGTGTTGTGGCGCTGGCAATCACATGTGTTTGGGATTCTGAAGTTGTTTTGCGAGGATTCTCCCGAAACTCATTTCATGATCTGAAAAGGGTGTTTTGCAGAGCATATGACTGCCCAGGAGGTGCGGCTGTGTGGCCTGCTGCTACAGGAGCACTTTGGAGAGGTGGTGGAGAGGATAGGCACTCACCTGCTCAGAGGAGGGGCACAGAACCTCAGGACCATCGCCAATGAGACCAACACACCACTGGACCTGGTGAagaagtctctgtgtgtgttggtacagCACGGTGCTTGTGAGTTCGGGTCGGGCCGGCGAGGCCCCGGGAGCCCAGTGGAGTACCGGGCCAACTGTGAGCGGGTTCTAAGGGTTCTGCGGTACCCGCGGTACATCTACACAGCTAAGACCCTGTATGGAGACACAGGAGAACTCATCGTGGAGGAGGTCCTACAACGAGGCCATATGACCATGAGCAACACGGTCAAGACTGTAGCTGACCGACTCACTCATAACAtggaggAGGGTCGTAGTATGGAGTACAGTGAGGTGGTCTCAGCCTTCTCTAAGCTGGTGGAGACTCACTTCCTGCAGCGCTGTCCTCCGGTGGCCGAGATGGGAACTGCAGCCTCCTCCACTACCCCGGCGACCCCCAGCACCCCTGCCGCCCCCGCCTCCACTGCCCCCCCAACAGCAGAGAGCAACCCCGACTGCTACAAGCTGCCCCATGTCACACTCATAGGTCGTGGGAAGCGCAGACGCTCCAGTGACGATagtgaggagcagagaggagggaagaaagcCAAGATGGAGGTAGAGtCGTGTGGTGATGAGGGGATCTACTGGCAGGTGAACTTTGAGAGGTTCCATCAGCACTTCAGAGACCAGGCTGTCATTAGTGCTGTGGCCAGCAAACTGGACCAGACCAGTAGTGAGATAGTGAGGACTATGTTGAGGATGAGTGAGGTTACCACCACACAGACTGCCGCCTACACTCAGCCCCTCTCAGCCAATGAGATCTTCCGCTCCCTCCCGCCCAACTACAGCATCAGCAGACCAATCCTGGACCAGTACCTCTCCCTTCTGGTGGATGACCCGaTGGAGTTTGTGGGGAAATCAGGTGACAGTGGAGGAGGAATGTACGTGGTCAATCTCCAAAGAGCCCTGGCCAACCTGGCGAGAGCCACACTGGAGTCTGTGGTACAGGAGAGGTTTGGCTCGCGGTCGGCTAGGATCTTCCGTCTGTTGCTAAGGAAACGTCACTTGGAGCAGAAGCAGGTGGAGGACTTTGCTATGATCCCTGCCAAGGAGGCCAAAGACATGCTGTACACACTGCTGTCAGAGAACCTGGTAcagctacagGAAATCCCTAAGACTCCTGACCACGCCCCTTCACGTACCTTCTACCTGTACACTGTCAACCAGCTGCCTACTGCCCGCCTACTGCTACAACACTGCTACAAGACAGTGGCTAATCTGATTGAGAGGCGCCTCTTCGAGACCAAGGAGAACAAGCGTCTGCTGGAGAAGTCCCAGCGAATCGAGGCGATCCTGGCATCGCTGCAGGCCAGTGGGGCGGAGCCTGAACAGCTGACAGAGGTGGAAGAGATGATCACTGCCCCCGAGAGACAGCAGCTAGAAGCCCTGCGACATCACATCAACAAGTTGGACTCTACAGAGAACCAGGTGGATGAGACTGTCTTTCTTCTGGAGTCCTACATCTTCTCTACCAAGAccaagtgagagggagggaggggagaaactcAATGGACATAAAGCTGCATCAATAAAATCTGTTTGGGTTTTCATATACCTGTGCTTTTTCTGCCTGACATACAGGCGTCGTTATTTCAGTTATGTGTTCAACAATGTCTGCTAGTGTGAAAGTGTTTATTCTTTTATAGAATGAAGTAGTCTGAAATGCcagattaaaaataaaaagttatGTAATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135684 lncRNA upstream 21881 17500646 ~ 17501204 (+) True G117865
TU135683 lncRNA upstream 22855 17499938 ~ 17500230 (+) True G117864
TU135644 lncRNA upstream 79473 17442891 ~ 17443612 (+) False G117842
TU135645 lncRNA upstream 79473 17442891 ~ 17443612 (+) True G117842
TU135621 lncRNA upstream 101425 17412955 ~ 17421660 (+) True LOC110520798
TU135710 lncRNA downstream 4283 17536520 ~ 17543637 (+) True G117883
TU135784 lncRNA downstream 128547 17660784 ~ 17661055 (+) True G117943
TU135755 lncRNA downstream 151450 17683687 ~ 17684278 (+) False G117926
TU135758 lncRNA downstream 151450 17683687 ~ 17686455 (+) True G117926
TU135804 lncRNA downstream 190524 17722761 ~ 17723043 (+) True G117959
XM_036939779.1 mRNA upstream 8058 17506575 ~ 17515027 (+) False gba
XM_036939785.1 mRNA upstream 8058 17506576 ~ 17515027 (+) True gba
XM_036939761.1 mRNA upstream 27117 17484825 ~ 17495968 (+) False dap3
XM_036940059.1 mRNA downstream 484558 18016795 ~ 18047915 (+) False LOC110536418
XM_036940051.1 mRNA downstream 484560 18016797 ~ 18047915 (+) False LOC110536418
XM_036940041.1 mRNA downstream 484562 18016799 ~ 18047915 (+) False LOC110536418
XM_036940069.1 mRNA downstream 520268 18052505 ~ 18071232 (+) False LOC110536431
XM_036940078.1 mRNA downstream 520268 18052505 ~ 18071232 (+) False LOC110536431
TU135495 other upstream 65063 17455765 ~ 17458022 (+) True G117735
TU135611 other upstream 101425 17410632 ~ 17421660 (+) False LOC110520798
TU135623 other upstream 101425 17410632 ~ 17421660 (+) False LOC110520798
TU135631 other upstream 113798 17400013 ~ 17409287 (+) False LOC110520798
TU135467 other upstream 449384 17073201 ~ 17073701 (+) True G117714
TU137226 other downstream 925121 18457358 ~ 18476354 (+) False LOC110536658
TU137225 other downstream 944187 18476424 ~ 18477134 (+) False LOC110536658
TU137398 other downstream 1101602 18633839 ~ 18636041 (+) True G119153
TU137405 other downstream 1138276 18670513 ~ 18672320 (+) True G119160
TU137542 other downstream 1426899 18959136 ~ 18961465 (+) False G119245

Expression Profile