RNA id: XM_036939888.1


Basic Information

Item Value
RNA id XM_036939888.1
length 3305
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC110519442
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17733938 ~ 17808531 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAAACGCTACGGTAGCCTATACACTGAGGGAAAAGAGGGGTAGCGCGGGAGGGAAACGTTAGATATTAATAAGTATATTTTAATATATGTGTTAGCCTTTAAATGTTTATATAAATGGACTGCTGGATTTATCAATAGCTGGCTGCTGCAGAAATAGTTTTAAAGAATATAGCCTTGTAGCCTAATAATTGCAGAAATTTGACTATTCTAACAGGCAGGGCAGTACTCAGAGAGTGACTGACTGGCTTTACCGGATTTGCCAAGAGTCGTGACGAGAGGATAGAGCAAATAACCGATCACCGAGGCACCGGGTTGGGGATATGTGATCTGATGATCGCTTGCCAAGACGTGAGACCTTAACGGGAGCAGCAACTCCACTGATCTGTTACGGATTCGAAACCGGGAGAGGGAGCGATTGGCACAAAGAGCGGAGAACGAATCGCATTGAGTCTACTATTCCCGGAGGGAGGATAACAGGAGACGCGCACTGAAGACAACAACGCCACGGTAAAACGTGGttaaaataaacaaaatcatCTCAAATTACTCTCGGGATTATTTTACAACGTGGAGTGAAGGATCTCTTGAAATCGGGGCTCCGAACACCCTCACGTCCTAAAGCTCTGGTCGCTCCTCTCCAGAGGACCGACTCTGCTCGCACTCACCCCGCTCTTCTCACCTCGAACCCCGCAGAGCACCTGTCGTTCTCCCCGCTGTCTCCCGATGAAGGAAGCCGACGCGATCAAGCTGTTCGTGGGGCAGATTCCTCGGAATCTAGAGGAGAAGGACCTCAAACCGATCTTTGAACAGTTCGGGAAGATCTACGAGCTGACGGTGATAAAGGACAAATACACCGGCATGCACAAAGgatgtGCATTCCTGACATACTGTGCGAGGGAGTCAGCGCTGAAGGCCCAGAGTGCTTTGCATGAGCAGAAGACGCTACCGGGGATGAACCGACCCATCCAGGTAAAACCAGCCGAcagcgaggggagaggagAAGACAGGAAGTTGTTTGTGGGCATGCTGGGTAAACAGCAGAGTGATGAAGACGTCAAGAGGCTGTTTGAGCCCTTTGGCACTATAGACGAATGTACTGTACTACGGGGGCCAGACGGCACCAGTAAAGGTTGTGCGTTTGTGAAGTACCAGGGACATGCTGAAGCTCAGGCTGCCATTAGCACCCTGCATGGGAGCCGCACACTGCCTgGTGCGTCGTCCAGTCTGGTGGTGAAGTTTGCcgacacagagaaggagagagggctgagacGGATGCAGCAGGTGGCATCACAGCTGGGCATCTTCAGCCCCACCATGACACTTAACTTCCCTGCTTACAACGCTTACACACAGGCCGTCAGCGCACAGGCGaTTGTCCAGCAACAAGCTCTGGTTGCTCAGTCAGCGTACCTGTCTCCTGTAGCAACTGTTGCCAGTTTACAGATGCAGCAGATGGCAGCGCTCAACGCAAACGGAATCCTCGCCACGCCCATCACATCTTcctctgAGTCTAGTAGCTGTCAATCACAATATCTCCTCCACTGTGATTGGTCCTCCCGGTTTGCAGGTACGAATACCCCTCCAACCATCTCAGCCACGCCCGTGCCATCACTACCTCCACCTCTAGGAGTCAATGGTTACAGTCCACCAACCAATGGACAGCAAGCATCAGAAGCACTATACACCAATGGCATTCATGCGTACCAAGccCAGAGTCCAGCATTATCTCTAGATCCTCTCCAGCAGGCGTATGCAGGCATGCAGCACTACACAGcGGCGTACCCTGCTGCCTATGGATTGGTCGGCCAGCATTTTCCACAGCAACCTACCCTGGTTGCCCAGCAACACCAGCAGccccagcaacagcagcagcgagaagGGCCGGAGGGTTGTAATATCTTTATCTACCACCTGCCTCAGGAGTTCAGTGACAGTGAGATGCTCCAGATGTTTCTGCCCTTTGGAAACGTCATCTCAGCTAAAGTCTTTGTAGACCGCGCCACCAACCAGAGCAAGTGCTTcggttTTGTGAGTTTTGACAACCCATCCAGTGCCCAGACTGCCATCCAGGCTATGAATGGGTTCCAGATCGGCATGAAGAGACTCAAGGTGCAGCTGAAACGACCTAAAGACGCCAACCGCCCCtactgaaggagagaggagagagGTGAAGTTTTCAGACTCCGGCCGTGGTGGAATcccagcgtgcattgcgccctcAGACCTACTACCTTTCTTTTGAGCGACGGGGAACagcacacatacaccacacacacaaacacaccacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcattgcACTCTAAAAGGACCAAGGCACAGATATTGACCAATGTACATATTATagtcctcacacacacaaacactgacatACTTTCAAATACATATATGTCAGTAATCGTACCCTTTGAACTGGACTCAGTTTGAAAATGGTTTGAGGAGTTTGAGGAGTTTGAGGAGTTTGTCTGGAGTGTGTAGGGCAGTGAAGATCACACACATACACGACCCAGGAAGTACTTACTAAAGTCATTGATGAGATGATGAATAATGGTGATATATCACTTCTTTGGACcataacatgtcatattacatGGCTATTACATGTGTATAACATGATACAAATAGGAAGGCCTCCATTTCGTAATAAAAAAAGGAAAACAGGAAAAAATATTGAGACAAAAATGAGTAATTTAGAGAAACTTTGGAGAGAGATCCTTATGGCCTGTAAATAATTTAGTTTAAGAAGAGTAACATTTAGAAAATTACAAAAAAATGCAAAAAGAAGAGTACTTTAGATAAATCACTGAAAAATGacacaatattattattattattgttattattattattatcttcgTTAGGGGATATTGTATTAGAAATAAAGAAAGGGGAGAATCACAAACATATTTTCAATTTCTACTTAGATTTTAGGATAAATGTGGGTGGGAGGGACTGCACCTTTTCTGAGAGGTTTTAATATTTGAACAAGTTTTTATTTATTGACTAATTTATCAATTATTTTTGTTAATAGGGAGAAATGATGAAGGGTTTAAAGGGGTTACTGATTTTAGAATTTTTTTAGAGCAAAAAAGGGTCTGTTTCTGTCAGACTCTGTCAGAGTAATTATAATTATGAATGAATTATTACAACAATGATATTTATTTCTTATTTATTGAGTCTGTTTTTGATCCAATCTCtttttaagttaaaataaaaagtaTTATACATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136752 lncRNA downstream 4936 17728654 ~ 17729002 (-) True G118663
TU136751 lncRNA downstream 5987 17727691 ~ 17727951 (-) True G118662
TU136749 lncRNA downstream 8552 17725183 ~ 17725386 (-) True G118660
TU136698 lncRNA downstream 103563 17629604 ~ 17630375 (-) True G118629
TU136608 lncRNA downstream 208691 17524563 ~ 17525247 (-) True G118582
TU136819 lncRNA upstream 55823 17864354 ~ 17876646 (-) True G118722
TU136821 lncRNA upstream 60024 17868555 ~ 17899971 (-) True G118723
TU136827 lncRNA upstream 63033 17871564 ~ 17872514 (-) True G118726
TU136843 lncRNA upstream 94080 17902611 ~ 17903908 (-) True G118741
TU136848 lncRNA upstream 113543 17922074 ~ 17922290 (-) True G118746
XM_036939861.1 mRNA downstream 11827 17685997 ~ 17722111 (-) False LOC110536315
XM_036939866.1 mRNA downstream 11827 17685997 ~ 17722111 (-) True LOC110536315
XM_036939855.1 mRNA downstream 11828 17685997 ~ 17722110 (-) False LOC110536315
XM_036939874.1 mRNA downstream 19033 17685997 ~ 17714905 (-) False LOC110536315
NM_001124710.1 mRNA downstream 52507 17668635 ~ 17681431 (-) True arnt
XM_036939936.1 mRNA upstream 1445 17809976 ~ 17919784 (-) False LOC118938160
XM_036939944.1 mRNA upstream 1445 17809976 ~ 17919784 (-) False LOC118938160
XM_021622078.2 mRNA upstream 122701 17931232 ~ 17947821 (-) True tars2
XM_021622108.2 mRNA upstream 143850 17952381 ~ 17966177 (-) False LOC110536358
XR_005035418.1 mRNA upstream 143850 17952381 ~ 17966177 (-) False LOC110536358
TU136666 other downstream 23915 17682022 ~ 17710023 (-) True G118606
TU136678 other downstream 67372 17665330 ~ 17666566 (-) True LOC110536309
TU136544 other downstream 249687 17473534 ~ 17484251 (-) True LOC110520799
TU136508 other downstream 401910 17331115 ~ 17332028 (-) True G118494
TU136456 other downstream 481662 17244124 ~ 17252276 (-) True G118456
TU136791 other upstream 100962 17909493 ~ 17919751 (-) True LOC118938160
TU136786 other upstream 190942 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other upstream 190942 17999473 ~ 18003296 (-) True LOC110536375
TU136915 other upstream 323943 18132474 ~ 18152786 (-) True LOC110536462
TU136972 other upstream 353778 18162309 ~ 18165113 (-) True LOC110534274

Expression Profile