RNA id: TU136791


Basic Information

Item Value
RNA id TU136791
length 1656
RNA type TUCP
GC content 0.39
exon number 4
gene id LOC118938160
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17809976 ~ 17919784 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagttgtgtaaTCTGTCCATTTTGTATCGCTCTTTTTCTCCCCTTCAGGCCCCCCGGCTGCCAGTTTAAAACAAGGACAAAAAAAGTTGTCGGGTGaacgagagaaaaaaaaactgaaacccTTCCCCGATCCGAATCCAGggaggagtgagtgagtgtgacagAACGAgggggaccgagagagagagagcacgcgaAGGAACCTTCTCTCACAGCCACACAGAAGACACAGCGGTTGTTCTGACTATCACCGAAAGGAGCTGATAATAACTCACCGCGGGAATCAACAAAAACACATATACGGTGGTCAGAAAGTCGTTACCGGGGGGAAATACTTCAGGGCGAGGCCACCGAGAGAATGCGTCTCAGGTTTCTGTACAGgATTTATGCCCTGTGTTGTTTTGTGGCAGTCGCATCCTCGCTGACCAAGGCTGAGAAGAAAAAGGCGACGGGCAGAAGATCTCGGCAGGTGGACAATAGTCCGGAGGGGGTGTGGTCTGCCTGGGAGGAGTGGTCAGGATGTTCTCAGAGTTGTGGAGTGGGCGTGTCACAGAGAACCAGAAAGTGTGAAGCTCCTCCCCGTCCCTTAACTccacccctctcccactctcttccaAACTGGGGGGGTTCAACGTTCCTCCCAGGGAGGGCAGGGGGTCCCAACCATGGCTCTGTCATCTCCGCCATCCACCCCTTCTACTCCCCTCATTACTCTAGGAACCAGCAATCCCAGTAcgggggaggaggtgggggagggacagagagacagccagaccCCTTCTATCCCCCCTCACTCCCATCATCCAATCAGAACCCAGGACTGTCTCTCTATCGGGACACTCCTATAGGAGGAGCGGCAGGAGCTGTGCCAGCGCAGTCCTCCAATCCCACATCTCCCCTCTATCGCCCGGAATTCTCATCACCCAATCAGGAGCCAGGTTCTGTTTATCGCTCCCCCTCATTTCCTGCCCCCCCATCCAGCTACAGCCAACCAGCACAGGCCGCCCGCCGGCCAACCAATCCTGGAACAGGGAGGGCGGGAGGAAGTGGCAGCAGAAGGTCAGTGTTGCCCAATAGGGGGGCTCTGCCTGCTAGTAGgtcctcTTCTATCCGTCCGGGTCAGTTTGGTTACGGCAGGGTTCCCTTCTCTCTGCCATTACACCGGCAAAACCGGCAGGCCCGCCACACTGAGCACGGCAATGCTACCATAGCAACCCTGGTACTAGAGACCGAGGGGCAGGAGGGAACTGTTGTTAACATTGACCAAATGgacagatctggagaaggagaagagaagaggaggggagagaaggagagggagggaggcaagaaCCACAAACtgaataggggagagagggagcatgagaggagagaggaagaaaggaagagagagggggagagtacgGAGTCACCTGTCGCTAAGGCATTAATAATGACAACCATAGCTAAACCAGAAAGGAATGGACAGAGGGACACGGACActcacagacagacggacagacagagacaagctgctgcggagcgagggagggagagagggagagaaagagagagagtgcccTCGACCCTCCctcactcacacagtctctctcccttccagccCAACCATGACAGAATCATTGATAGACgcgcccctcctcccctcccccctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136843 lncRNA downstream 5585 17902611 ~ 17903908 (-) True G118741
TU136821 lncRNA downstream 9522 17868555 ~ 17899971 (-) True G118723
TU136819 lncRNA downstream 32847 17864354 ~ 17876646 (-) True G118722
TU136827 lncRNA downstream 36979 17871564 ~ 17872514 (-) True G118726
TU136777 lncRNA downstream 103039 17803916 ~ 17806454 (-) True G118688
TU136848 lncRNA upstream 2323 17922074 ~ 17922290 (-) True G118746
TU136849 lncRNA upstream 5383 17925134 ~ 17925378 (-) True G118747
TU136853 lncRNA upstream 10562 17930313 ~ 17930529 (-) True G118751
TU136793 lncRNA upstream 59491 17979242 ~ 17982144 (-) True G118699
TU136862 lncRNA upstream 62872 17982623 ~ 17983119 (-) True G118760
XM_036939888.1 mRNA downstream 100962 17733938 ~ 17808531 (-) False LOC110519442
XM_036939896.1 mRNA downstream 100962 17733938 ~ 17808531 (-) False LOC110519442
XM_036939905.1 mRNA downstream 100962 17733938 ~ 17808531 (-) False LOC110519442
XM_036939912.1 mRNA downstream 100962 17733938 ~ 17808531 (-) False LOC110519442
XM_036939920.1 mRNA downstream 100962 17733938 ~ 17808531 (-) False LOC110519442
XM_021622078.2 mRNA upstream 11481 17931232 ~ 17947821 (-) True tars2
XM_021622108.2 mRNA upstream 32630 17952381 ~ 17966177 (-) False LOC110536358
XR_005035418.1 mRNA upstream 32630 17952381 ~ 17966177 (-) False LOC110536358
XM_036939971.1 mRNA upstream 32630 17952381 ~ 17966181 (-) True LOC110536358
XM_036939998.1 mRNA upstream 46650 17966401 ~ 17976510 (-) False LOC110536367
TU136666 other downstream 199470 17682022 ~ 17710023 (-) True G118606
TU136678 other downstream 242927 17665330 ~ 17666566 (-) True LOC110536309
TU136544 other downstream 425242 17473534 ~ 17484251 (-) True LOC110520799
TU136508 other downstream 577465 17331115 ~ 17332028 (-) True G118494
TU136453 other downstream 657217 17244124 ~ 17252276 (-) False G118456
TU136786 other upstream 79722 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other upstream 79722 17999473 ~ 18003296 (-) True LOC110536375
TU136915 other upstream 212723 18132474 ~ 18152786 (-) True LOC110536462
TU136972 other upstream 242558 18162309 ~ 18165113 (-) True LOC110534274
TU137031 other upstream 348797 18268548 ~ 18272107 (-) False khdc4

Expression Profile