RNA id: XM_036939971.1


Basic Information

Item Value
RNA id XM_036939971.1
length 4273
RNA type mRNA
GC content 0.58
exon number 10
gene id LOC110536358
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17952381 ~ 17966181 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCTGTCTGTCACACTTTTGCTACCTTCATGACTCATTGCGGTGTCCGTGTCTGCAGTACCAGAGAGGACTGGAAAAATGGCGGCGGGTTCTGGAGCTGTTAGCGGCCATGGTGGCCGCGGCGCTTTGGAGGCCACCCTGGACCGCAGATTCCAAGGAGTATCCAACACTATGGAGTCTATACAGGGACTGTCGACCTGGTGCATTGAAAATAAAAAGTATCACAGCCTTATCGTTCGGTACTGGATGAAGTGGCTCAAGAAATcGGACACCAACCACCGCCTGAATCTGTTCTATCTAGCCAATGATGTAATACAGAACTGCAAGAGAAAGAACGCCATCGTCTACCGCTCAGCCTTCGCTGAGGTGCTCCCCAACGCTGCACTAATGGTCAAAGACCCGAAGGTGCGTAAGTCAGTGGAGCGAATCTTCACTATCTGGGAGGAGAGAAACGTCTATCCTGAGGAACTCATCACTCAGCTCAAAGCCAACCTggccaagaaggagagagagagggagaaagagaaggctaAAGAGATGCCTCCTCCGCCAGCCCCAGTCAACCCCAAAGCTGCCCTGAAGTCCAAGATTGTGGCTGATTTCATAccccagtcgTTCATCGAGCAGCTGGCGGGTTTCAAACgggtggtggaggaagaggagctgAGGGAGACCCAGCTGACAGCTCTCAGAGTGGACGTCTGCAGCACGGAggccctcaagagactgaaagACAAGGCCGGAGGGAACAAGTTTGCCAAGGACTTTGAAGAGGGCAGTCAGAAGCTGCAGGAGTTTGTCAGTTTCCTGGAGAACCAGATGCCTGTAGGGCCCCCTCTGCTGGAGGCTCTGGGAAACGCAGACGTCTTCTATGAGATGCAATACAAGGAAGTCAAGATCGTGGCCAGCGCCTACAAAACCTTTGCCAACCGCGTGGTCAACCTCAAACGTAAACTGGATGCCCTCAAGTCCTCCCTTCCCGGTCCCGAGgactctcccatcccctccccctcTGAGGACGCTCCCTCACCCACCGGCTCTGACTCCCCTTTCCTGGGGCTGGGAGGAGGCCGAGGTGGTAGGCTGGGCTTTGATCCGGACCTGGATGGGAGTGCCATGGACGAGAGGGACATGGGGGTtgtgagagagggggacaacaGAGATGTGGAGGACATGGATCTGTCTGAGGAGGACATGGAGACAGCCAACACAGCTGAGAAGCAGTCGTCATCAGCCACCGTTTCCAAGGTGACCAGCTCCAAGACCGCAGCGAAACCCGCCCCTGTCACACTCATTCGAACCTCCACCGAATCCCCACTCAAAAAGGCAGCCTTGTCTACCCCCACACCGGTGACCCTCAGCGCCCCTATGAGCGCGGGTGTGAGTGGTCCTAGCGGTCCGACCGCTCCTCTGGGAATGAACCTGGCGAATGTGGATCTGGGCAAGATCAGCTCCATACTGAGCAGTATCACATCAGCCATGAagaacacagccaGCCCTGTGTCTCGCCCCTCCCCTGGAACTCCCACCACCCCCTCTGGCCAATCATCTTCCTCCAAAACCCCAGTTGGCCCCACCCCTCCTAGCCCAGCCCTGGCCAGCATCCTGTCCAGAGTGAACGTCACCCCTGAAGGCATCCTCAACGCCCTGTCAAAGACCCAAACACAGAgtCTGTCCTCTCTGCTGAGGTCTGGtagctcctcctcctctgccccctcctcccATGCCTCCCCAGACTCCTCAGCAGCCAAGGGCCCCcccacacccaccactcctagcaACACCAAACCCCTCCTGACCAACAGTCTCAAACGAGACACAcctgagaggagcagaggagccaGGGATTGGGAGAAAAACCGAGaggcctcccctcctcctcctccctctctccctagccgctctgtctctcctcccagcCTAGAGTCTAAGATCAACCGTTTCCTCCAGGGGAACCCAGGGTTCAGTCTGGGTCTGGGGGATGGGAGCCCTCTGCTGGGGGGAGACGGGGTAGACGGGACCCCCGTCAGGGATGAGAGCGGGGGCACCCCCACCCAGGACGAAATCATGGACACACCAGGGGGTGTCTCCTCCGACCCCCTTGGCCTCAACAGTGACTCCAAGAGCTTAGGCTCATCCATAGGTCATGATCTTTCACCCACGGCCTACCGCAGTGACCCTTGGGACGCCGTCATCACCCCAACAGGAAGCAGCAGCGACGTggacttcctctcttcctcttctcgtTTCCAAGGCTACGGAGCGGGGAAGAAGGCCGCCAAGCTGAAGGAGGAAGATTCGAAGAGGAAGATTAGCTCTTCATCACTGGGAAGCAGCAAGGTGAAGAAGGATGGACAGAACAGTCACGGGAACAACAGATCagttgaaggagagaggagagcgtcCATAGGTTCTCGCAAGACCAGCAGCGGGTCAGAGGAGGGAGGAATGAGTGGAACGAGGGATGaaaagggaaagaggagaggagaggatggtgggGGCTCATCTGACGGGGAGGGGGGGCAGTACCACCGTATTGAGACGCTGGTGTCGCCTTGCACAGAGGGAGCACCTTTCCAATCACTGGGGGGCTTCTCAAACCGCCAGCCAACCGGAGAGCGCATCCAGACGGTGGAAAGTATCCGCGTGATTGGACAAGGGCTGCGTCGCGGGGGTGGAGAAGGGGGGAGGCCAGGCGGAGGAATGTGGTACGATGAGGAAGGGTACCTGGATACCCAGCCCCCCTCACCTTCCCCTCAGGGCGGCTCTGACGACATGACTTCACCCCCCATGCCTCCCCCGACCTCACACCACCaccttcctcctcatcctcattcTAATCACCCTCCCCACCCTCATCCGCACGGCCCCCCACCCCAGTTTCAGATGCCCCCCTACCATGGGGAGAACCCCCAGGGTCCCCTCCCCTCACACCTCCACCatcacccccctcctcccttcttcaactcccctcctccacccatcccacgccctccaccccctcccatGCCCCAGCTCCCTCCACCCCCGCGCAACTTCCTCCCCCCCTCGGCAGTCATGGTAGGCGGGGTTCTAGTCCCCATTGACCGCCAactgcccctccctccccaggtCCGCCCAGACGGAGGAGACCgaggggggatgggagggggACCCAGGGGGGGTAAAGGTGGTCCCACTCCCCTCATGTCCTCTCTGTTAGGGGAGCCCCCTAAGATGCCTCGTCCCGGCACAGTTAAAGAGCATTTCACTCCCCGCCACGCACCCCCTCTCCACCGCCCCGGCACCCCCGGTGCCCCACCTCCCTTATTGGGCCGTGTCAAGGATGGCATcaacctccctcctccacccccctcctcctccacccctccctctccctcaggcGACCCACTGCTTCCTCGCCCCCAAGCTCCTCCGCTCCAGCACCCTCCCGCTAGCCCGCCTGCCCAGCCCCGacaccccaaccccaaccatcCCCACCGTCCCTCGCCGTCCCTCCTGCGCCTACCCTCCCCTAATCCCTGCCCCCCCATCAACTCCACCCCCCAGAGACCTCTACTCCACCCTCGCGGCCCCCCTGTCCACCCGCACCTAAACCGAGAGCCACCCATGTTCCGCGGGGGCAAGCGTCCTGGCCCTCCATTCGGCGGGGGCCGAGGAGGTCCCTTCTACCCCCCCAAGAGACCTTTCTTACCCCCACGATATTGAAATGTTAACCATGACAAGCTGAATGAAAAGCAACCCACACACCTAGCTACCCAACACGGGGAGAAGATGTGTAGAACCCTTATGGTATGAGCCCAGTCTGTCCTCACTATGTTAATCCTAGTGGAGTCATTTGTTTTACTACATTTAGCTGATCGCACCTTGACACAAACTAGCACGTCACCTCACCACAATACAGTACCAGCTTAGCAATTATGCACAGTGTTATGGATGAAATAGGTAACCAAACCAAATCTGCCTCCTCCGATCCCCAGGAGCAACAATGTTCTCAGCTTCCCCTCACTAAAGCAGTGAGGGAGTAATGGAGGTGTGAACTAGAAGGAAGACGACAAGCACAGATCAAATAGAAACAGGTGGTTATTCTATTTCACTAAAATTCTACTTACCTCCAGTATTGTGTGAATAAGCTGATATAAACActttcagagagaaagagagcgagggatagatgggatgggatggatggatggatgtgagGGGCTGGAGAGATGGAATGGGCTGGAGGgatggaatgggatggagagatgggatggGCTGGAGAGATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136853 lncRNA downstream 21852 17930313 ~ 17930529 (-) True G118751
TU136849 lncRNA downstream 27003 17925134 ~ 17925378 (-) True G118747
TU136848 lncRNA downstream 30091 17922074 ~ 17922290 (-) True G118746
TU136843 lncRNA downstream 48473 17902611 ~ 17903908 (-) True G118741
TU136827 lncRNA downstream 79867 17871564 ~ 17872514 (-) True G118726
TU136793 lncRNA upstream 13061 17979242 ~ 17982144 (-) True G118699
TU136862 lncRNA upstream 16442 17982623 ~ 17983119 (-) True G118760
TU136864 lncRNA upstream 18721 17984902 ~ 17985117 (-) True G118762
TU136869 lncRNA upstream 50583 18016764 ~ 18017600 (-) True G118767
TU136882 lncRNA upstream 77167 18043348 ~ 18044371 (-) True G118779
XM_021622078.2 mRNA downstream 4560 17931232 ~ 17947821 (-) True tars2
XM_036939936.1 mRNA downstream 32597 17809976 ~ 17919784 (-) False LOC118938160
XM_036939944.1 mRNA downstream 32597 17809976 ~ 17919784 (-) False LOC118938160
XM_036939912.1 mRNA downstream 143850 17733938 ~ 17808531 (-) False LOC110519442
XM_036939998.1 mRNA upstream 220 17966401 ~ 17976510 (-) False LOC110536367
XM_036939990.1 mRNA upstream 220 17966401 ~ 17977043 (-) False LOC110536367
XM_021622120.2 mRNA upstream 220 17966401 ~ 17977045 (-) True LOC110536367
XM_036940026.1 mRNA upstream 33250 17999431 ~ 18009077 (-) False LOC110536375
XM_036934600.1 mRNA upstream 129443 18095624 ~ 18099207 (-) True LOC118936999
TU136791 other downstream 32630 17909493 ~ 17919751 (-) True LOC118938160
TU136666 other downstream 242358 17682022 ~ 17710023 (-) True G118606
TU136678 other downstream 285815 17665330 ~ 17666566 (-) True LOC110536309
TU136544 other downstream 468130 17473534 ~ 17484251 (-) True LOC110520799
TU136508 other downstream 620353 17331115 ~ 17332028 (-) True G118494
TU136786 other upstream 33292 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other upstream 33292 17999473 ~ 18003296 (-) True LOC110536375
TU136915 other upstream 166293 18132474 ~ 18152786 (-) True LOC110536462
TU136972 other upstream 196128 18162309 ~ 18165113 (-) True LOC110534274
TU137031 other upstream 302367 18268548 ~ 18272107 (-) False khdc4

Expression Profile