RNA id: XM_036940026.1


Basic Information

Item Value
RNA id XM_036940026.1
length 5980
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110536375
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 17999431 ~ 18009077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGAAGATCGTAAACCGTGGAGATAGAAAGAACTAGCAAAGAGGCACACCAATGAAGGTCCGGTGATCGCGAGAGGAAGGAGACTGCCGACCTGATGTTCCAACGAGTGTGAGACAAATATCGCCAAGTGGGTTACAGAGATAGACGTTATCAAGGCCGTTTCTGGCAACCGTGGCCTGTTCTACTGCTGTTATTTTGTTGCAATATTTCAGTGATGCAATCACAGGGCAGCACTTCCTCCCAGCCCTCTGTTGATTCACTGAGCTCCAGTGACAGCTACCTGTTCAACCACTCTGAGCAGGCGGAGGATGACACTGATGTCTTCCTGTCTGAACGCTCCCCCGCCGTCATCCTCGGCACTGGGGGCATGGTCAGGGGCAACGGGAGTGCCGGGGCAGAGAGTCCCGAGTCCCAGTGGGCGTGTGACGGCTTCACTGACCGCGAGGAGGAGGAGTCACAGGGTTCAGAGGTCACTGGAGGTCACCCCAGGGTCACAgctgagagacagagaacaagcgagacggagagagagaagacagagggagacctGCTCTTTGCCCAGAAGtgTGCTGAGCTGCAGGGGTTTGTAAGGCCCCTACTGGAGCTGCTGAATGGACTGAAGGGGGGACGATTTGACCGTGGTCTGAGTAGTTTCCAGCAGAGTGCAGCCATGGACCGCATCCAGAGGATCGTAGGGGTCTTACGGAGACCCAGCATCGGGGAAAAGTATATGAACACTCTTCTCCAGGTGGAGACTATGCTGAAGATGTGGTTTCCACAGGTGTCCCCCTTTGCCCCACCTACCGCCCCTACCCtcttcccccctcacctctccccccgGGACAGCCCCAGCAGCACCCCCCCACACAGGCACAGAGACCAGTCGCACATCCCTGTGAAGaagcGCAGACTGAGTTGGTCAGACACAGACTCTGACAccccccctcctgtactcttTAAGAGGCTCACCGCCagtggaggagagaagatggggaaggaggggggagaggtcaCCTCTGCAACTTCAGGGGTACCCCCACACCCCCAGGACCCCACCATCGAccaagagaatgagagaaaggaaGACGAGgacagcaaagagagagagggagaatcatCAAGCAACAAAGCAGGGCTCTATTCTGAGCCCGGTCCCACCTCGGTCCTTGTAGTGCCCATCCTTTCCCCCTGGAAACCAATGGAGGGGAAACAGCTGCTGCCTGTCATGCCACCTCCCACCACCAGGGGCAGTCCAGCCATGCAGGACAGCGTAATCTCTTCCACCACGCCCTTCAACAACCTCCAAAGCCAGCAGCAGCCAATCGGGTGCCAAAGCCAGCCTGTTGCCGGGAAGACTGGGAAAAAGACTGTAAAGACCTGTCAGGGGCGGGTCCAGGCTCATTCAATCACGGCAAAGCCTTTGAAAAGGGGGGAGTGTAAGAGCAGGGTTAACCCCGCCCCTTTATAGACCTGATGCACTGAGCACACTCCGCCCAGCAGGCTAGTGTGACTACGTCAACATGCTAAAGCTGCTGTGATAGGGAGAGTCAGGGGTAGAAATGGTCTGCAGTCCAAACACTTTATGTttagcccctcagccctcgtacTAGCCACTctcccttgggggaatccccttTGAAACCGGATGCAATTTGATTGCCATCTTAAGTGGAGGTCCAATTCACTAACGTTTCCCCCTCGGCCCTCGATTTAGCTCGAGGGAGCGAGTGAAGAACTTTGATCACTTGCGGGGTTTATATGACCCACAATTCAATGCAAATTGTAGTCATGTATCATACTCCGGTGGCCGCGAATGTCACGTTCACTCATCACGGCTGCATTTTCGGCCTGTCAGACAAAATGATGATTCTAgcttgctatatatatatatgacattgaTTTTAGCGTTGCCAAATTGGCTTAGTCTCGTAGTGAGGAGCCTATAAAACCTAGCTAGCTTCATAAACATATTTTGGGGAATTCTGAAATGTATTGCAATAAATGACCAAACTAaaaaactagctagccagctatggagcactttagctagctagctagctacgttagcttGCTAGATACATGAATAGCTTTAAGTTGGTTGTTTTTAAGCTCAACTTCCAGATTTCCACTAAGGATGTTGCCTCCGATCATCACTCTCTAATTTGAATTTGGACTGCAGCCATAGGTTTAGGTGCTGATGAGTTTTCTTAATGATGGATCTTTTGCAACTACCTAAACGCAATTAGGACCATTAATGAAAATGATATCTGAGAGACTACAGTTATTACAACGAGGGCAGAATGTGTCCTTGTGAATCATAATCACAGTTCCATAACAATCAGATTTTTTTGCACAAATAGTGGTTGTAGATTGGAAGGTTGGTAAGCACCTCTTATAGCCCATCGCTTGTTTATAGAATATTGGATCTCTGATTGACCGAATGGTATACTCTCTTACTCCACTTAAGAAAAGGTAAATGCCACTATGCAAACTTAATCGAAACACTGTTGGCTTAGGAATATTTGGGTTTCAGGTGGGTGGAGGTGAGATGTGACGAGGAGAGGATGGTTAGAAGGACAGGTGGAATAAGATTTGGGGATTAAGGATAGTTATATTCCTGGAATGATATTCCTGGAATCTCCTCAGAGATGATGCTTCCAGTGaataacagcagacagacagttcaaTAGACTGAGGCATTACGGATAGAAGTGAGGAATAATCATTAGACTACTGAATGACCTCTAGAGCTGAgtaacagcagacagacagttcaaTAGACAGGCATTCCGGATAGAAGTGAGGAATAATCCAACTAGCCAGATGCCATTAGACTACTGAATGACCTCTAGAGCTGAACAACATCTAAGAGGACGTGGCAGGGACCTCTACTGAAGTCTAAAGAGGTTTAGAATCGATTCAATGTCAATCCATCAACATGACACAATCTGTTTGTGAAGACGAATGCAAGGTGTTTTGGGTGAAGATCAATTATGACTGTGAAACGAATGAACCACAACTGGGTTTTATTCTGTGTGGAGAAATGTGAAGCGGGTTATCCGTTAAACAGTAAATCACATTTCAATGGCCTAACCGGTAGGGGATAGAATACCAAACAGACCTTAGATCAGCTTCTAGGGACAACTTAATCCTTTAAATGGCTCAGTGAGAGACTCTAAAGACCACCCTGAGAGAAGAGtccactcacagacagacagagacagacatcctGTTTATTTATTCACATGTTGACTTGACAACGCTGCATTtatttattacctttatttattaATTGGCAGCTGTGTTTCTCTCTTTGAACTTACAATTGGTTGACCGATTGGTTGACTGATGCTCTTGGGAAAGTTGCTGTACAGCGGTTTGTTTGTGGTTTTTACTGTTATGATGGGACAAATTTTAGGGGGATGATTGGACTTTTGTGCCTTTACCAAATAGGATGTGtacaaaaaaacaaagcattttATTCTTTCAAAGCATTTTCTACTGCATTTTGATAATTTGCTTGTCTTTCTTAATAGCACAGTGCACAATCAGTCGAATAACACAGTACACAACGCCTAATTCCTGCCTTCAATCTCTTATCTGGCTTCCAGGGGTCTGTTGGGCAAAACTAGCTACCTACAGATCCCACAACAGCAAGGCAACCTCTACTCCAAGCTGTGCAGTGGTCATGTGTACAACACAATAGTATTCTATACATATACATCATAGTCTTCTATGAACTAACGACAGTGGctaatttatttcagtttttagaTTGACAGTTGCCTCTTCTCCTGGGTGTATTTTATAGTTGATTATGTAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATGTAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATATAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATGTAGGTCTGACTGGAGGATATGATCAGAGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATATAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATATAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATGTAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATATAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATGTAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATATAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATATAGGTCTGACTGGAGGATATGATCAGCGCTTGCtatctcctgtgtgtattttatagttgaTTATGTAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATATAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATGTAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATATAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGTGTGCTTCTTGGCGCTCGTCAAACTTAAAAACGTGAGGATCAGAGCTAAAAGGGAGACAGTATGAATATTTATTTTGCACCATCATCGTAAGCTGCTATACATAATAGGACTAAAACATGATTGAAATATTCCTCATAACAAATCATTAATACACATGTATTTACTAATGACACATATGCCATTCAGCAGACgctttttatccaaagcgacttacagtcgtttgtgcatacattttcacatatgggtggtccctggaatcaaacccactgtcctggcattgcaagcactatgctctaccaactgagttccAGAGGAAATACACGATACAGGGTTTACAAAGAGTTTACTTATACTTAATCAACTGTTTATATGCAGAGCTTCCAGTAAAGCACTGCTAAAACAAGTTCATATGGTTGCATCCATACTCCCTATAGCTTTCTCCAAGGAGAGCCACAACTGAACACACAATCACTGGTAGCCTCCATGTTACCTACCTACTGTCTTTACTTGGGGCTGGGGGATGTTTTTATGCTTGAGGTATAAGTTGCTCTTAACCACAGGTCTATGATCAGATTTTTCCTACCCCCAATCCTAACTTTTACCATTAGGGGTTGAAAACACACCTGATCCCGGGCCTGTGGTTAAGGGCCACTTCTTCCTACTTGTGTTTTTTATACAGCTGTTTTGTGACAGAGAAACTGATTGCACAGATTTTTGTGATCTCTTTTCCATGTATGTTTTCTACTGCAGAGACCACCGCTGATTGGTCAGAAATAATATGTCTTGTTTATTTCAACTGCCTTTTTATATCTTAGTAGATGCTGTACTCACCCCCtctactcctccccctctctatcctccgccctcccttctgctcctctctatcctcctccctcactcctcccctctctctactcctccctccaaccctctactcctccctccctcctcctctctatcatccgccctccctcctcaccctctctcaactcctccctccttctctgccACATTCTACTACTTTtgccctcctccctttctctcatatctgttcatccctttctctccctctcttaccttctctctcactatttctctgtttctcactcttaCTCTGCTGTCACTCTGTGTTACTCTTCGGAGTACTTTTTACATTGATGGCACAAAAATAAAATCTTTTAATAAATGAAACTTTTGAAGATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136864 lncRNA downstream 14314 17984902 ~ 17985117 (-) True G118762
TU136862 lncRNA downstream 16312 17982623 ~ 17983119 (-) True G118760
TU136793 lncRNA downstream 17287 17979242 ~ 17982144 (-) True G118699
TU136853 lncRNA downstream 68902 17930313 ~ 17930529 (-) True G118751
TU136849 lncRNA downstream 74053 17925134 ~ 17925378 (-) True G118747
TU136869 lncRNA upstream 7687 18016764 ~ 18017600 (-) True G118767
TU136882 lncRNA upstream 34271 18043348 ~ 18044371 (-) True G118779
TU136867 lncRNA upstream 38481 18047558 ~ 18047901 (-) True G118765
TU136902 lncRNA upstream 61457 18070534 ~ 18071226 (-) False G118799
TU136903 lncRNA upstream 61457 18070534 ~ 18071226 (-) False G118799
XM_021622120.2 mRNA downstream 22386 17966401 ~ 17977045 (-) True LOC110536367
XM_036939990.1 mRNA downstream 22388 17966401 ~ 17977043 (-) False LOC110536367
XM_036939998.1 mRNA downstream 22921 17966401 ~ 17976510 (-) False LOC110536367
XM_036939971.1 mRNA downstream 33250 17952381 ~ 17966181 (-) True LOC110536358
XM_021622108.2 mRNA downstream 33254 17952381 ~ 17966177 (-) False LOC110536358
XM_036934600.1 mRNA upstream 86547 18095624 ~ 18099207 (-) True LOC118936999
XM_036961696.1 mRNA upstream 90294 18099371 ~ 18102318 (-) True LOC118944060
LOC110536479 mRNA upstream 110995 18120072 ~ 18127143 (-) True LOC110536479
XM_021622236.2 mRNA upstream 118270 18127347 ~ 18136431 (-) False LOC110536462
XR_005035440.1 mRNA upstream 118270 18127347 ~ 18136431 (-) False LOC110536462
TU136791 other downstream 79680 17909493 ~ 17919751 (-) True LOC118938160
TU136666 other downstream 289408 17682022 ~ 17710023 (-) True G118606
TU136678 other downstream 332865 17665330 ~ 17666566 (-) True LOC110536309
TU136544 other downstream 515180 17473534 ~ 17484251 (-) True LOC110520799
TU136508 other downstream 667403 17331115 ~ 17332028 (-) True G118494
TU136915 other upstream 123397 18132474 ~ 18152786 (-) True LOC110536462
TU136972 other upstream 153232 18162309 ~ 18165113 (-) True LOC110534274
TU137031 other upstream 259471 18268548 ~ 18272107 (-) False khdc4
TU137198 other upstream 418485 18427562 ~ 18433668 (-) False G119000
TU137320 other upstream 467377 18476454 ~ 18476753 (-) True G119087

Expression Profile