RNA id: XM_036934600.1


Basic Information

Item Value
RNA id XM_036934600.1
length 1753
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC118936999
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18095624 ~ 18099207 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaagtgaacAAGAAGTAGAAAGAGCAGAagcgatagagagggggagagatgtcattggaTCCCTTATTGGactgccGTATACCACCCTATCCAGCGAGGACCCCACTGTGCTGCCTGGCGAGGAGACAGAGCTGCCCATGGAGATGCCTGCCGCACTCGCAGAGGAGAGGACACCAGTGTCTGTCCCTCTGCCCCCTTCCACACCCGGTGAACCAGAGGAGCGAgggatggctagagagagagggagatggagagatagccCCACCCTACAGGATGTTACTCCCCCAGTGAAGCAACCTCGTAGGAGGCAGCTGCTCTTCATCGACCAGGAAACACAGATATCCCAGGAGGCACTGCAGCAACAGATAGACAACACTCTCATACAGACCAGGcccctgGTTGTAATCAGTGGTCCCTCTAAGAGAACAGTGTCTCCAGTTGATCTCCTTGGTAACCCATGCACCACCCTCCCTCCAGAGCTACTGTTGCAATGGAAACGGGTGGCGATTGTCACAGCGCTCACTGGCTCCGCCCTGCtggtagggaggacagagacagactcggagtcagagagagagagggataaagagagagtgatgaaggcaaaggaggagggagacagagagcaggagggagagctCAGCTCAAAAGAGgtacctAGAGAGTTGGCAGAGTCTGGCCTGTCCCAGCATGATGTTTCCACTCGGTCTCCGCTGTCCCTGGAGGTCTCTGATAGAGACATGTCCCGGGAGACCTCCCCCCTGGACACACCCGAGAGCAGAGGGTCTGTGTCCAAACTGAAGGACATTCCAGAGGAGGGCGAGGGACcgctggagagagaggcagaggacatACCTATGGCTGACTTATCAGCAGAGCTACAAGACGCAGTGACAGAGCCTCTTGAGGATCATGAAGGGGTGCTGTTCCACTCTCTGCTGCCCCCACTGGCCCAACGCAGTAGTGTCACTCACTCATTCTGGACCCTACTGGAGATGGTAACTGCCAGGAGACTCTGTGTGCAGCAGGATGAACCTTATGGTGACATCATAATTTCACCTGGACCCAACTATGAGGAGGGGAATGAGagtgtgtaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgagtttATTCAAAGATGACTTTCAAATAGATCTCACAAACAGATAGTTTGAGTCGGGTAACTAGAAGAGACGACAGTTGACCTGTTCCTCTTTGCTAATCGTATTTTAGGTGCttcatttgtgtgtgttatttagcagacactcttatccagagcagctTACAGTATTAAGTGTACACATGTCTTGTGTTTTTGATCTTGCCCCCAGTGGGAGTCCAACCCACAACCATGGTGTTGCGAATGCCatcctctaccaactgagccacacagaacATTTTGTAAAGCTTAAAGTTTTTAAAGTTTTAAAGCAGGTTttgctttgttgtttttttatatcAGTAGTCTCTTATTATATTCTGTGACTAAAGACTGAATTTTATATTCAATATCACATTTCTCTTTTAAGCATTTTAAATGACTTTTCCACCATTTCTATTTCCACAGTATTTTAGTCTATTCTTAGCGTGTGCTGACATATAAAGGactcagtgtgtttgtgtttcagtgGTGTTTTTTTTAGACTTGTAACAGGTGTTTGTTTCTGTGAATAAACAAGTCAAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136925 lncRNA downstream 17987 18076706 ~ 18077637 (-) True G118805
TU136920 lncRNA downstream 20436 18074743 ~ 18075188 (-) False G118803
TU136922 lncRNA downstream 20436 18074743 ~ 18075188 (-) True G118803
TU136910 lncRNA downstream 22425 18070534 ~ 18073199 (-) False G118799
TU136908 lncRNA downstream 24327 18070534 ~ 18071297 (-) False G118799
TU136913 lncRNA upstream 28158 18127365 ~ 18130863 (-) False LOC110536462
TU136960 lncRNA upstream 45431 18144638 ~ 18144986 (-) True G118831
TU137035 lncRNA upstream 167663 18266870 ~ 18267457 (-) True G118887
TU137026 lncRNA upstream 169447 18268654 ~ 18272107 (-) False khdc4
TU137028 lncRNA upstream 169447 18268654 ~ 18272107 (-) False khdc4
XM_036940026.1 mRNA downstream 86547 17999431 ~ 18009077 (-) False LOC110536375
XM_021622120.2 mRNA downstream 118579 17966401 ~ 17977045 (-) True LOC110536367
XM_036939990.1 mRNA downstream 118581 17966401 ~ 17977043 (-) False LOC110536367
XM_036939998.1 mRNA downstream 119114 17966401 ~ 17976510 (-) False LOC110536367
XM_036939971.1 mRNA downstream 129443 17952381 ~ 17966181 (-) True LOC110536358
XM_036961696.1 mRNA upstream 164 18099371 ~ 18102318 (-) True LOC118944060
LOC110536479 mRNA upstream 20865 18120072 ~ 18127143 (-) True LOC110536479
XM_021622236.2 mRNA upstream 28140 18127347 ~ 18136431 (-) False LOC110536462
XR_005035440.1 mRNA upstream 28140 18127347 ~ 18136431 (-) False LOC110536462
XM_021622243.2 mRNA upstream 28140 18127347 ~ 18153072 (-) False LOC110536462
TU136786 other downstream 92328 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other downstream 92328 17999473 ~ 18003296 (-) True LOC110536375
TU136791 other downstream 175873 17909493 ~ 17919751 (-) True LOC118938160
TU136666 other downstream 385601 17682022 ~ 17710023 (-) True G118606
TU136678 other downstream 429058 17665330 ~ 17666566 (-) True LOC110536309
TU136915 other upstream 33267 18132474 ~ 18152786 (-) True LOC110536462
TU136972 other upstream 63102 18162309 ~ 18165113 (-) True LOC110534274
TU137031 other upstream 169341 18268548 ~ 18272107 (-) False khdc4
TU137198 other upstream 328355 18427562 ~ 18433668 (-) False G119000
TU137320 other upstream 377247 18476454 ~ 18476753 (-) True G119087

Expression Profile