RNA id: LOC110536479


Basic Information

Item Value
RNA id LOC110536479
length 1950
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110536479
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18120072 ~ 18127143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAATTCAAATTCCCAATGCAATAGATTTCCCACAGCAAAAAGTACTAAATTATAGTAGATTGTTATTCACAACAAAAGTGTATGCACTGAGTAGGCCTAACTTCTCAGCTGCAGTCTTTCACACACTGTACCCAGATTCACTTCTGCCAATGATGCAGGGAGGAATGTCAACCAGCCTCGACACCGGTGGCTTTGGGTTGTCGCAGGCAAACGGAACGTCATAATCCAATTAGCAGCACTAGATGAGTTCGCTAACCCAGCTAGCTAGCCTGGACAACAACCGACTGCACTGCTAACTAAACTGAACGTGTGAGTGTTGTGTCATTTTTGAGACAGCAGTGAACAAGTCAAGGAGTGAAGCAACAACCCAAAGAGGGAAACCTTTCAGGTTATCAACAACATCATTGGTCATCTGATGGCAGGAAGGATGCTGACGCTACGTCGGATGCTAGCGAGCACAGGTGCGCACTCGGCCGCGGCGCAGCAGTGCGTCTCGCCTCATCTGGCCCAGCGCTACAGCACCGCAGCAAAGCAACAGGAGAATCCAAAGAAGACTACATTTGGGCCCTTGAGTGATCAAGACCGAATTTTCACAAACTTGTATGGCCGTCATGACTGGAGTCTGAAGGGTGCTCTGCGTCGGGGTGACTGGTATAAGACTAAAGAGATCCTCCTGAAGGGGACAGACTGGATCCTGAATGAGGTCAAGGTGTCTggtctgagagggagaggaggagctggCTTCCCTACCGGCATGAAGTGGGGCTTCATGAACAAACCCAGCGACGGcagACCTAAGTACCTGGTAGTGAATGCAGATGAAGGAGAGCCAGGGACGTGTAAGGACAGAGAGATCATGCGTCACAACCCTCACAAGCTGGTGGAGGGCTGCCTGGTGGCTGGGAGGGCCATGGGAGCCCACGCCGCTTACATCTACATCAGAGGAGAGTTCTACAACGAGTCCTCCAATACACAGGTGGCGATAAACGAGGCGTATGCAGCAGGGTTGATAGGCAAGAACGCGTGTGGCTCTGGGTACGACTTTGATGTGTTTGATGCGGGGGGCAGGAGCCTACATCTGTGGGGAGGAGACGGCACTCATCGAGTCCCTGGAGGGCAAGCAGGGGAAACCCAGACTCAAACCACCCTTCCCCGCTGACATAGGGGTGTTCGGATGCCCAACAACGGTTGCTGATGTGGAGACGGTTGCCGTGGCGCCTGCTATCTGTCGTCGAGGTGGAGCGTGGTTTGCGAGCTtcgggagagagaggaatgctgGGACAAAGCTGTTCAACATCTCTGGTCACGTAAACACTCCGTGCACAGTAGAGGAAGAGATGTCCATTCCTCTCAGAGAACTCATAGACAGACACGCAGGTGTGTGTTTACGTGACCAGAGATGTTGAACAGCTTTGAGACTACTGGGGGACGGGGCTGCATGGCCTGTACAGGGTCTGGTTCGCCACTTCCGTCCGGTCATGGAGAGCCGCATCTCGGAGTACCACAAGAAGAACCCTGCCAGGGAGGCTGACATTGAGATGATCTGAGACTAAACTCCCTGCTCCTAACATGCTGATCTTATCACTCCTCACTTCAAATCATTTCCATTGCTCAATGACTGCTTCTGTTTTATTGGGTATTTACTGTATGTTAATGAACCTAGCACCTATTCAATACCAACCCACTTTGTTTGTTTTCATGTGTGTAAACAGTGCCTGTAACTGGGCTGTATTTGTGGTGACATTAGTGCAGAGTTATTTCACTATCAGAAAAAGATCCCATCCTTCTTTCTAAACCAGCATGGAATGCCACTTTTGGTCTGTCTGAACGCAGGAgtgctgtaataatgtaatatgctatataatatcaaatgtatttatatagcccttcttacatcagctgatatctcaaagtgctgtacagaaacctagtCTAAAATCCCaaccagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136925 lncRNA downstream 42435 18076706 ~ 18077637 (-) True G118805
TU136920 lncRNA downstream 44884 18074743 ~ 18075188 (-) False G118803
TU136922 lncRNA downstream 44884 18074743 ~ 18075188 (-) True G118803
TU136911 lncRNA downstream 48775 18070534 ~ 18071297 (-) False G118799
TU136913 lncRNA upstream 222 18127365 ~ 18130863 (-) False LOC110536462
TU136960 lncRNA upstream 17495 18144638 ~ 18144986 (-) True G118831
TU137035 lncRNA upstream 139727 18266870 ~ 18267457 (-) True G118887
TU137026 lncRNA upstream 141511 18268654 ~ 18272107 (-) False khdc4
TU137028 lncRNA upstream 141511 18268654 ~ 18272107 (-) False khdc4
XM_036961696.1 mRNA downstream 17754 18099371 ~ 18102318 (-) True LOC118944060
XM_036934600.1 mRNA downstream 20865 18095624 ~ 18099207 (-) True LOC118936999
XM_036940026.1 mRNA downstream 110995 17999431 ~ 18009077 (-) False LOC110536375
XM_021622120.2 mRNA downstream 143027 17966401 ~ 17977045 (-) True LOC110536367
XM_036939990.1 mRNA downstream 143029 17966401 ~ 17977043 (-) False LOC110536367
XM_021622236.2 mRNA upstream 204 18127347 ~ 18136431 (-) False LOC110536462
XR_005035440.1 mRNA upstream 204 18127347 ~ 18136431 (-) False LOC110536462
XM_021622243.2 mRNA upstream 204 18127347 ~ 18153072 (-) False LOC110536462
XM_036940158.1 mRNA upstream 204 18127347 ~ 18153075 (-) False LOC110536462
XM_036940168.1 mRNA upstream 30582 18157725 ~ 18188414 (-) False LOC110534274
TU136786 other downstream 116776 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other downstream 116776 17999473 ~ 18003296 (-) True LOC110536375
TU136791 other downstream 200321 17909493 ~ 17919751 (-) True LOC118938160
TU136666 other downstream 410049 17682022 ~ 17710023 (-) True G118606
TU136678 other downstream 453506 17665330 ~ 17666566 (-) True LOC110536309
TU136915 other upstream 5331 18132474 ~ 18152786 (-) True LOC110536462
TU136972 other upstream 35166 18162309 ~ 18165113 (-) True LOC110534274
TU137031 other upstream 141405 18268548 ~ 18272107 (-) False khdc4
TU137198 other upstream 300419 18427562 ~ 18433668 (-) False G119000
TU137320 other upstream 349311 18476454 ~ 18476753 (-) True G119087

Expression Profile