RNA id: XM_036940182.1


Basic Information

Item Value
RNA id XM_036940182.1
length 2029
RNA type mRNA
GC content 0.54
exon number 13
gene id pk
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18198290 ~ 18224300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagacagacagacagacagagagacagagagagaggactggacagACATATAGAGGTGATAGGATAGTACAGTTGGAGTTTGACAAAGCTTTGGGTCAAGATGGGAGgtTTACATTACCAAAcccGTATCAGACGTTACTCTGACGTCATGCCCCTCCCAGACTCCTTCATCCAGAAGCAGCAGCTGGACGCCAGCATGGCCGACACCTTCCTGGAGCACCTGTGTCTGCTGGACATCGACCAGGAGCCAATCACAGCCCGCAACACAAGCATCATCTGCACCATCGggcCTGCGTCTCGCTCCATCGCCAAACTGCAGGAGATGGTGAAGGCAGGAATGAACATCGCTCGACTCAACTTCTCTCATGGCTCTCATGAGTACCATGGTGAGACCATCAAGAACATCCGGGAGGCGGTCGAGACCATAACCACTGACCCTTTATATTACAGGCCGGTAGCCATCGCCTTGGATACCAAAGGCCCTGAAATACGCACAGGCCTGGTTCGAGGGactgcagaGCAGGAGGTGGAGCTGGAGCGTGGGGCCAGTGTGCGTGTGGTGACAGGGGAGGGGGACAGGGACAGTACGGATGGGAACGTCATCTGGGTGGACTACCCCAGTCTGCCTCAGGTCCTGGAGAAAGGAGGAAGGATCTATATCGACGACGGACTCATCGGACTAAAAGTTCTGGAGACAGgtcCAGACTGGGTGGAGGCACTGGTAGAGAGTGGAGGTGTTCTGGGCAGCCGTAAGGGGGTCAACCTGCCGGGGTGTGACCTGGTGGACATGCCCGCTGTGAGTGAGCGTGATGAGGGGGACCTGAGGTTCGGCGTGGCCCAGGGGGTGGACATGGTGTTTGCCAGCTTCATCCGCTGTGGCCAGGATGTCAGGGAGGTCCGACGGGCCCTGGGGCCCTTCGGAAAGGGCATCAAGGTGGTCAGCAAGGTGGAGAGTCGCCAGGGAGTAcataatttcttgGAGATCCTGGCGGAGAGTGATGGGGTGATGGTTGCCAGGGGCGACCTGGGCATAGAGATCCCTGCAGAGAAAGTCTTCATCGCTCAGAAGATGATGATCGGACGTTGCAACTCCGCTGGCAAGCCTGTTATCTGTGCCACACAgatgtTGGAGAGCATGGTAGCCCACCCCAGGCCTACGCGTGCGGAGGGCAGTGACGTAGCTAACGCAGTGTTGGATGGAGCCGACTGTGTGATGCTCTCTGGGGAGACGGCTAAAGGACTGTTCCCTGTCGAGTCTGTGGCCATGATGCACTCGataTGCAGGGAGGCAGAGGCAGCCATCTTCCAACAGCAGTTGTTTGAGGAGCTTCGTCGTCTGACCCCTCTGTCCAATGACCCTACTGAGGTCACTGCTATAGGAGCTGTAGAATCCTCCTTCAAATGCTGTGCTGGAGCTGTCATAGTACTCACTACTACTGGCAGgtcaGCCCAGCTCCTGTCCCGGTATCGCCCACGCTGTCCCATCGTCGCGGTAACAAGAAGTCCTCAGgTGGCACGTCAGGCCCAGCTGCTGAGGGGTGTGTTCCCAGTGCTGTTCCACCCCCTCCCTGCCCCCGTCTGGGCCGACGATGTAGACAACAGAGTCAACTTCGGCATGAAcatagGAAAGGCCAGGGGCTTCTTCAAGACAGGTGACATGGTGATCGTGGTGACCGGCTGGATCCCTGGTTCTGGTCACACTAACATCATGAGGGCAGTCCACGTGCCCTAAACACTCTGTTCCTATTGGACACTaccactgactgacagacaggcccACCATCCTAAGTGGCACATAGCCTAACAGACACACTAACTGGAACACTAACTACATAGATAGCATAGAACTAGAATTAATATATTTCCCTTATGTGGAGATGAAGTACATAAACAAAACAACAGTCAATATTTTTTCCATGTTCATTGAAAGTGATTTTAATGTAGTCaatgtttttgtgtgtttattcATTTCTGTCTTGGAAGCACTGCCTCTCTCCAAATAAAGCTTGGAGCATAACCTTATCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136960 lncRNA downstream 53304 18144638 ~ 18144986 (-) True G118831
TU136913 lncRNA downstream 67427 18127365 ~ 18130863 (-) False LOC110536462
TU136925 lncRNA downstream 120653 18076706 ~ 18077637 (-) True G118805
TU136920 lncRNA downstream 123102 18074743 ~ 18075188 (-) False G118803
TU137035 lncRNA upstream 46747 18266870 ~ 18267457 (-) True G118887
TU137026 lncRNA upstream 48531 18268654 ~ 18272107 (-) False khdc4
TU137028 lncRNA upstream 48531 18268654 ~ 18272107 (-) False khdc4
TU137033 lncRNA upstream 48531 18268654 ~ 18272107 (-) True khdc4
TU137039 lncRNA upstream 66164 18286287 ~ 18286566 (-) True G118891
XM_036940172.1 mRNA downstream 9786 18157725 ~ 18188504 (-) False LOC110534274
XM_036940168.1 mRNA downstream 9876 18157725 ~ 18188414 (-) False LOC110534274
XM_036940158.1 mRNA downstream 45215 18127347 ~ 18153075 (-) False LOC110536462
XM_021622243.2 mRNA downstream 45218 18127347 ~ 18153072 (-) False LOC110536462
XM_021622236.2 mRNA downstream 61859 18127347 ~ 18136431 (-) False LOC110536462
XM_036940213.1 mRNA upstream 4368 18224491 ~ 18248742 (-) True LOC110534298
XM_036940227.1 mRNA upstream 29597 18249720 ~ 18250682 (-) True LOC118938207
XM_036940238.1 mRNA upstream 35877 18256000 ~ 18265778 (-) False LOC110536568
XM_036940243.1 mRNA upstream 35877 18256000 ~ 18265786 (-) True LOC110536568
XM_036940271.1 mRNA upstream 48423 18268546 ~ 18277593 (-) False khdc4
TU136972 other downstream 33177 18162309 ~ 18165113 (-) True LOC110534274
TU136915 other downstream 45504 18132474 ~ 18152786 (-) True LOC110536462
TU136786 other downstream 194994 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other downstream 194994 17999473 ~ 18003296 (-) True LOC110536375
TU136791 other downstream 278539 17909493 ~ 17919751 (-) True LOC118938160
TU137031 other upstream 48425 18268548 ~ 18272107 (-) False khdc4
TU137198 other upstream 207439 18427562 ~ 18433668 (-) False G119000
TU137320 other upstream 256331 18476454 ~ 18476753 (-) True G119087
TU137371 other upstream 320929 18541052 ~ 18542497 (-) False LOC110536756
TU137801 other upstream 417758 18637881 ~ 18646663 (-) True LOC110534340

Expression Profile