RNA id: XM_036940238.1


Basic Information

Item Value
RNA id XM_036940238.1
length 2653
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110536568
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18256000 ~ 18265786 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacactcacacacactccacatCTTGATTCTGTTCTCAGGACTTTCCCTCGGGGGTGTGACCAAAGGTTATTATTAGTGTCTGTCTCaaccgtctttctctctctcaatctcctgTATCCTTCTCatatctctccttccctatctactttctcctctgtctgtctctttgcttCTCTGTTCTGTCTTCATCGGTTCATCTaatctgtctttttctctcatcTTGTTTCATTTGTACTTCACTCTCTTACTTTTGTCTCTTCTCTGCCACTCTATTTTTCTTCTTGCTGTTTTCTCTTCCCTCTGTTTACTTTTGTCtgttctgtcttcctctgcactgctttttgctctgtcattagtttctgtctcctctcttcagTCATCTTTCCTTTTTTTTCCTTTTGTGGACTTTATCCTCCCTTCTTCGCTGTCTTCTTTACCTACGCTGtatcttcctctcccctcttttccCTTATCTTCTtaattccctctctctgttctgagtTATGGGGAAGACAGAGTTGTACTCTGTGTATAAGAACTTTCTggactgtctctgcctctctCGGAGCAGCAGTGAGGGGCCAGGGAAGAACGAGAAGGCCCCTGATGATGGTCACCTGGCCTACCAGAATGGAGACGTTCTACAAGAGAGATATGAGGTTATCAGTCTGTTGGGAGAGGGCACCTTTGGGAAGGTGGTGACGTGTGTGGACCGGCGCAGggctgGGGCACGTGTAGCTCTGAAGATCATTAAGAACATGGAGAAGTACAGACAAGCTGCTAAACTGGAGATCAATGTCCTGGAGAAAATCAATGAGAAAGACCCACACAACAAACAtcAATGTGTTCAGATGCTGGACTGGTTTGACTACCATGGTCATGTGTGTATATCCATGGAGCTGCTAGCCCTCAGCACTTTTGACTTCCTGAAGGAGAACAACTTCCTGCCGTACTGTATGGATCACATCCGCCAGATGGCCTACCAGATCTGCCTCGCTGTCAACTTTCTCCATATCAACAAGCTGACCCACACTGACCTCAAACCTGAGAACATCCTGTTTGTCAACTCTGACTACACCATCACTTACAACGCTGagaagAAGCGGGATGAGAGGAAAGTGAAGGATACAACAGTAAGGCTGGTGGATTTTGGCAGTGCCACGTTTGACCACGAACACCACAGCACCATCATATCTACACGCCACTACCGCGCTCCTGAAGTTATTCTGGAGCTGGGCTGGAGTCATCCGTGTGATGTCTGGAGTATCGGCTGCATCCTGTTTGAGTACTATGAAGGCTTCACCCTATATCagACCCATGACAACCAGGAGCAcctggccatgatggagagagtaCGGGGACCTCTCCCCTCTACGATGATCTGCAAGACCAGGAAGCAGAAGTATTTTCACTGCAGGCGTCTAGACTGGAACGATAACTCCAAGGCAGGACGATACGTCAAAGACCACATTAAACCTCTATGGaGATACCGGTTATCAGAAGCTAAGGAGCATCATCAGTTCTTTGACCTGTTGGAGAAGATGCTGGAGTACGAGCCCTCCaaacgcctctctctctcctccgccctcctccatcccttcttcctACCACTCCGTAGGGGCAGCAAGGCCTGGGAGAGCACCCGGAACATCTGCCGATGACCACTGACCTTTAACCCTTGACATGGATGCGAGGAAGGACAGCCCAACCATGTCATACAACGTGCCGTTGTAATGTGTCAGGAAGTCGTGCTTTGTGACAAACTGGTGTCCGGAATCCCTGTGTATTATGAGGGAAATAGGCTAATCTGACCTCAGAATCCCTGTGTATTATGAGGGAAATAGGCTAATCTGACCTCAGAATCCCTGTGTATTATGAGGGAAATAGGCTAATCTGACCTCAGTGTCTGGGGCAAATGTATCCTTCTCCACCTTTAACATAAAACATGGAATGGAGAGAGTCTGTCACTTCCCTTTAGGGTTTGATTCAGTGGAGGCTGCagaggggaggacaggctcataataatgtctggaacggagtgaatggaatggcatcaaaccaggtgtttgatgtatttgatatcattctactcattttgctccatccctcctcccctccatctcctcccctcccctcatttTGCTCCTCCCTAATTATGGTGCAACCAATCTCCTGTGGTTTGATTGGCAGTGTCCTTATGCTGATTGACAGCTTCGCTGCACAGTGGAGGCGGGCCTAGTGGCAGTGATACATGCATTATGTATGTAGAGCACGCTGTTTTAACTGCAGcataacattacacacacacacacacacacacacacacacacacacacacacacacacactctctctctctatctattacagttttatttttgtaacGCTGTAACTGGAGATTGTTGTTGACACTTTTGTTTATGAGCTGTATAAACTGTTTATTAATCTATAATAATGTTGCATTTGCACAGATGGGCTCATTGCtccctacaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagcatttctTTTTGTAACACCAACTGGAGATATTGGTGGAATGACTTGAATAAACGATTTATTGATGGTGCTATAATAATATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136960 lncRNA downstream 111014 18144638 ~ 18144986 (-) True G118831
TU136913 lncRNA downstream 125137 18127365 ~ 18130863 (-) False LOC110536462
TU136925 lncRNA downstream 178363 18076706 ~ 18077637 (-) True G118805
TU136920 lncRNA downstream 180812 18074743 ~ 18075188 (-) False G118803
TU137035 lncRNA upstream 1092 18266870 ~ 18267457 (-) True G118887
TU137026 lncRNA upstream 2876 18268654 ~ 18272107 (-) False khdc4
TU137028 lncRNA upstream 2876 18268654 ~ 18272107 (-) False khdc4
TU137033 lncRNA upstream 2876 18268654 ~ 18272107 (-) True khdc4
TU137039 lncRNA upstream 20509 18286287 ~ 18286566 (-) True G118891
XM_036940227.1 mRNA downstream 5318 18249720 ~ 18250682 (-) True LOC118938207
XM_036940213.1 mRNA downstream 7258 18224491 ~ 18248742 (-) True LOC110534298
XM_036940196.1 mRNA downstream 31700 18198290 ~ 18224300 (-) True pk
XM_036940205.1 mRNA downstream 31771 18198290 ~ 18224229 (-) False pk
XM_036940191.1 mRNA downstream 35852 18198290 ~ 18220148 (-) False pk
XM_036940271.1 mRNA upstream 2768 18268546 ~ 18277593 (-) False khdc4
XM_036940254.1 mRNA upstream 2768 18268546 ~ 18277594 (-) False khdc4
XM_036940282.1 mRNA upstream 3458 18269236 ~ 18277593 (-) False khdc4
XM_036940262.1 mRNA upstream 3458 18269236 ~ 18277594 (-) False khdc4
XR_005035455.1 mRNA upstream 3458 18269236 ~ 18277594 (-) False khdc4
TU136972 other downstream 90887 18162309 ~ 18165113 (-) True LOC110534274
TU136915 other downstream 103214 18132474 ~ 18152786 (-) True LOC110536462
TU136786 other downstream 252704 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other downstream 252704 17999473 ~ 18003296 (-) True LOC110536375
TU136791 other downstream 336249 17909493 ~ 17919751 (-) True LOC118938160
TU137031 other upstream 2770 18268548 ~ 18272107 (-) False khdc4
TU137198 other upstream 161784 18427562 ~ 18433668 (-) False G119000
TU137320 other upstream 210676 18476454 ~ 18476753 (-) True G119087
TU137371 other upstream 275274 18541052 ~ 18542497 (-) False LOC110536756
TU137801 other upstream 372103 18637881 ~ 18646663 (-) True LOC110534340

Expression Profile