RNA id: XM_036940254.1


Basic Information

Item Value
RNA id XM_036940254.1
length 2740
RNA type mRNA
GC content 0.55
exon number 14
gene id khdc4
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18268546 ~ 18277594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCcaaaaaacaggaagtgggaacGATATCGCATAGAGTGAAAGCTCTTGCAGTACTCCACTGTCTGGACAAGCTATATTGTAAGTCTGGCGGAGTCGGTATTGCGGTATAAAACGTTAGTGTTTTACGCAAAGAGAAATTCAACCAAATAGAAGATTGATGTCATTTGGTGGAACGCAAAACGGCGGTCGCCGTAGTAAATGGGACCAGCCGGGCCCAGGTCCTGGTTCAGACCAGATGGGGGAGGCGGAGGCGGCTCCTACAGGGGCTCTGGACGCTGCAGCTGCTGTGGCAGCTAAGATCAACGCCATGCTGGTAGCCAAGGGAAAGCTCAAGCCCTCCCAGATAGGACCCTCTGGACCATCTGGACCCCCAGACAAGGTTGTGGGTGCAGGGAAGCCCCAGCCTCCTATGAAAGCGAAGGATGACCTGGTGGTGGCGGAGGTGGAGATCAACGACGTTCCGCTCCCTTGCCGGAACCTGCTGACCCGCGGGCAGACACAGGACGAGATCAGCAAAGTGAGCGGTGCTGCTGTGTCCACCAGGGGGCGATACATGGCAGCAGTGGAGAAGTACAAGGCTCCACAAGGACAAGTGGATCTGTTGTCTGATTGCGTCATACAACCAAGTCTTAGGCTCCTGACcgactgcttctctctctctgtcgtcagGGACCGACCCCTCTATCTCCACGTCCAGGGCCAGACCAGGGAGCTTGTCGACAGAGCTGTGAACCGCATCAAGGAGATTATCACTAACGGAGTGGTGAAGGCGGCCACCTCCTCCTACAGCGGAACCGGAGCCACAGTCCCAGTCTACCAGCAACACAAACCCCAGCCCCCCTCACTGCCCCCCATCAACCACCATCACAGACCACACTTCCAGTCTGGGATGCACTATGTGCAGGAGAAGTTGTTTGTGGGTCTGGAGCATGCCATCCAGGGCTTCTCAGTGAAGGAGAGGGTGGAAGGGCCAGGCAGCTCCTACCTGCAGCACATCCAGGGTGAGACTGGGGCCAAGGTCTTCCTCAGGGGGAAGGGATCAGGCTGTCTGGAGCCCGCCTCTGGGCGAGAGGCCTTCGAACCGATGTACATCTACATCAGtcATCCCAAACCAGAGGGCCTTGCTGCAGCTAAGACCCTGTGTGACAACCTGCTGCAGACGgtcCATGCAGAGTATTCTGTCTTCCTCAACCAGATGAGTGTCATGATGCCTACTCCCGgcttTATGCAGCCCCCCATGGCCAACGGGATGCCCCCCCAGCCCCCTTACTACCCCCCATCGGGGTACCAGCCCAGCTACCCCCTCCCTGTACCTCCCCCTCAGCCCATTCCTCCCCCCTACGCTGTCCCCCCTCCCATTCCCCCTGGGCTGCCTGCCGGTCTCCCCCCTCCCAACCGGTACACCCTCCCCCCCGCACCTGTCACTTTACCACAGACTCTCCCACCTTCTCCTTTCCCACCCGCTGCTCCGGTTCCGCCCAAAGCTCCGCCTCCTGTAGTCTCAGCCAATCCGCCGCAGAAAAGACGCTTCACTGAGGAGGTGCCAGACGAGAGGGACAGCGGTCTGCTGGGATACCAGCATGGACCCATTCATATGACTAATTTAGGTGCAGGCTTCCCTGTGGGCAGCCCCGGCCCAGAGGCTTCAGGACCCCCGCCACCGAGTTCCTCCGGGCCGCCGAGGGAGAGGGACAGcagTAGGCAGCTGATGCCTCCACCACCCATTCCAATGAACGGAGGCATGACACccaagatggaggagaggaggctgcTGCAAGGCCCCCTGGatCCCTCAGTGAAGAGGATGAAGACGGGGCTCGTGGCATACGCTGGTGACTCCTCGGACGAAGAGGAGGACCACTCCACCCCCAAAACCTTGGGGGCAGGTAACCATGGTAACATCGCTGGGGTGACCCACTCCACCCCCACCTCACCCCCTGGCTGGACTCTGGGGTACCGCTGCCCCCCTCCGCCTCCCCAACGTGCCAAAACACAGCAGGCACAGTCACAGCAGCCCATGCCCTTCTGGATGGCCCCATAACACAGGAGTATTAAACCTCATACCCTCCCCTGACATCTAGGGCCTTTTGGAGGGTTCCATAATGATGTTTTACATCCCAAACTGAGCCCCAGtcccccctcttccccttttCTCTGAACCATCACTCCTACCTACTCCTCTACTTGATAGAATTTATTTTGTGATGACTTAGATTTCGTCAAAACAGTTTTGTCATGCGCTCAGcagtaaagcagtgtgtgtgtaaaatggaCTAAACAGACTGGCTGGCTGATACAAAGAGAACAGACTCAACCAGCCAACCAGGCACAACCAGGATACTGACAGACTGGATACATGGTGACAAGCAGCAAGATGCCCCAGACTTCCACACCGATTCAAATGTACCCTGAACTCTGTATAGGAGAGACAGCTGAGGAACAGACACAAATGGAGGGTAAATAGTGCCCTGTTTTTGATTGATTTGGAACGTGTCCACTCCTGGTTTTACTAGTGTAGAAAAGCACTGAGGTAGAAGAGATTTCAATGCATTCTAAGTTATTTctttgttaaaaaatatatttccccCATCCCCATTTTCTTTCTTGGTCCATATCTTAGTCAAATCTCCCTCTTCCTTCAGTACAGATCATACAAACATGCTCGTTGGACTTTTTATAAAATGCAATTGACTCAACTATTCTAATGTTTTTGTGGAATAAATTAGCATTATCTCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137035 lncRNA downstream 1089 18266870 ~ 18267457 (-) True G118887
TU136960 lncRNA downstream 123560 18144638 ~ 18144986 (-) True G118831
TU136913 lncRNA downstream 137683 18127365 ~ 18130863 (-) False LOC110536462
TU136925 lncRNA downstream 190909 18076706 ~ 18077637 (-) True G118805
TU136922 lncRNA downstream 193358 18074743 ~ 18075188 (-) True G118803
TU137039 lncRNA upstream 8693 18286287 ~ 18286566 (-) True G118891
TU137040 lncRNA upstream 10780 18288374 ~ 18288579 (-) True G118892
TU137077 lncRNA upstream 66614 18344208 ~ 18348747 (-) False G118915
TU137081 lncRNA upstream 68892 18346486 ~ 18348747 (-) True G118915
TU137082 lncRNA upstream 71436 18349030 ~ 18349250 (-) True G118916
XM_036940243.1 mRNA downstream 2760 18256000 ~ 18265786 (-) True LOC110536568
XM_036940238.1 mRNA downstream 2768 18256000 ~ 18265778 (-) False LOC110536568
XM_036940227.1 mRNA downstream 17864 18249720 ~ 18250682 (-) True LOC118938207
XM_036940213.1 mRNA downstream 19804 18224491 ~ 18248742 (-) True LOC110534298
XM_036940196.1 mRNA downstream 44246 18198290 ~ 18224300 (-) True pk
XM_021622281.2 mRNA upstream 11147 18288741 ~ 18292776 (-) True LOC110536509
XM_036940430.1 mRNA upstream 222205 18499799 ~ 18516011 (-) False LOC110536706
XM_036940432.1 mRNA upstream 222205 18499799 ~ 18516011 (-) False LOC110536706
XM_021622432.2 mRNA upstream 263456 18541050 ~ 18542623 (-) False LOC110536756
XM_021622453.2 mRNA upstream 282199 18559793 ~ 18564193 (-) True LOC110536762
TU136972 other downstream 103433 18162309 ~ 18165113 (-) True LOC110534274
TU136915 other downstream 115760 18132474 ~ 18152786 (-) True LOC110536462
TU136786 other downstream 265250 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other downstream 265250 17999473 ~ 18003296 (-) True LOC110536375
TU136791 other downstream 348795 17909493 ~ 17919751 (-) True LOC118938160
TU137198 other upstream 149968 18427562 ~ 18433668 (-) False G119000
TU137320 other upstream 198860 18476454 ~ 18476753 (-) True G119087
TU137371 other upstream 263458 18541052 ~ 18542497 (-) False LOC110536756
TU137801 other upstream 360287 18637881 ~ 18646663 (-) True LOC110534340
TU137868 other upstream 521906 18799500 ~ 18801387 (-) True G119512

Expression Profile