RNA id: TU137026


Basic Information

Item Value
RNA id TU137026
length 3112
lncRNA type sense_over
GC content 0.38
exon number 3
gene id khdc4
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18268546 ~ 18277594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACCTGTCACTTTACCACAGACTCTCCCACCTTCTCCTTTCCCACCCGCTGCTCCGGTTCCGCCCAAAGCTCCGCCTCCTGTAGTCTCAGCCAATCCGCCGCAGAAAAGACGCTTCACTGAGGAGGTGCCAGACGAGAGGGACAGCGGTCTGCTGGGATACCAGGTGATTTCCCATTATTTATTCTTCCACCTTATGTGCTGCCTTTGTCCAGTCTGTCCCTTCTGCTTCTGTTGTCTTCCTGTCTTTTCTTATCTTCTGTCCATGTATCTGATATCTGTTCCTCTTTCTGTTAGACTCAATTCATTATGATTCTCACTGTCTCTTGTCTGTAATTCTGTGAGTCCCTGTCTGCATTCTGTAGAAACGGTTTGCTTGTTGAGTGAGTGAGATTGAATGGGTTTAAGTGTCTGTTCAGTGTCAACTTGTTATGATCTTATGACGTTCATTGAAAAGCATTGTAACCATAGCTGTTATTATCTGAGTCCATGTAGTATTGGATTTATAGAACTTTCAGATTCTGGAAAGGTATTGTTGGATAATCATCAAATGTACTTCAATATATTGAAATTAGTGCAGGTACGATATCAGTatcatggcaaggaaacaaaCATGAAACGGAtgaacttctttaggaaaacggccctaatgttggaaacaaccATCGTTATGTTGTCCCCCAGAGTCATTAGGTTTATTTTCCAGGCTATAGCACATCatgttttacatacagcaggtttttaaaggaccaaagtgTTTGGTCTGCTTCCTGTTTTAATTTTTGCCATTCAAAAAATATCGCAGTACAAGTGTCGTCACAGGCCTAATTTAAATGTGTCCTCTTGATTTAATGATGTGTTACTTTAATAGAGTCCATTTCTATTTTTGGATTATGTGCAATCAGAGCATGCATAAAGTTAAAATACTAGTTTTATTGTCAGCTGCTTAAATAAGGTGTAGTGAAAAGGAAAACGTTATGGAATAATAACTCTGCAGTTCAGTTCCATTCAATAGTTTAGATAACTACATGCTTGTAGGGGAGGATGTGTGCTAATGCGCCTGTGTGTTTTTCTGCTCATAGCATGGACCCATTCATATGACTAATTTAGGTGCAGGCTTCCCTGTGGGCAGCCCCGGCCCAGAGGCTTCAGGACCCCCGCCACCGAGTTCCTCCGGGCCGCCGAGGGAGAGGGACAGTAGGCAGCTGATGCCTCCACCACCCATTCCAATGAACGGAGGCATGACACccaagatggaggagaggaggctgcTGCAAGGCCCCCTGGGTAAGTGCCCCACCCCATGTAACCCCTTGACCCCTCCCCATCCATGGCCTCAGCCATAAAGCACGCTGCCCACCCCCCCCGGCCTCTTGGCTGTCAGTAGTCAGAGTCAAATAGCATTTTGCATGCAGACATGCTGTTCTCACACGTGACAGAACAGGTTCTAGCAGATTACATCAGACAGGCATAAGTTCTGCTTTGAAAGTCGGTCAGTCAGTTCAGAATCATGAACTGGGCAAAGCTTCGATCCCCCACTGCCTCAGGTAACTCTGTCGTTGATCCTAAGTCAACCCCTAGCCCTAGGCACTGTGTAGGCCTGAGAGTATTTTATAGGTGTAAGCGATATGTAGACAATTACAATTGGCCTGTAGAAGAGTAAGGCTGATCTATTACCATACTGCTTACACCTGGCATCTCATCTTGTGACATCTAGGAGGTGTTTAGGGATGGATTTCAGATTGGGAGTCCCCCTCTCTGTCTAACTGGTGCTGTCCCCTCGCTGCCCGTCCCTTTCTGATGACGTCATCAGACAGGAGTGTCTGTGCCCGTGTTTGACTCCCTCACTAACAAGACTCTCTCTTTTTTTGTGTTCTTTCTCTGTGTTTTTCTTCTCTTCCATGTCTCTCTGGGTGGGATGCCGGATGGGGGTGGGGCTCTTCTCCTGTGGCGCTGTCCTGCATCGTGATTGGACGGCCCTAACGCTGCCGCTCCCCACCGACCAATGACTGCCACTGCTGACCCatgcccctcctcctctacctaaCTCACAACTGCTGCCAAACACAATGCAATCTATTAACTTTCTCTCCCTATCTGTTGGTAAACAATTGACTTCCAACGGTTGTTTTTGAAACCTTTGTGCTGGTCTTTGGttgtgttctttctctctctctgtgtctcccctctctctctcccgcacccctctcctttctccctcattcctccctctttctcccactgtttttccctctctcatctctctcagatCCCTCAGTGAAGAGGATGAAGACGGGGCTCGTGGCATACGCTGGTGACTCCTCGGACGAAGAGGAGGACCACTCCACCCCCAAAACCTTGGGGGCAGGTAACCATGGTAACATCGCTGGGGTGACCCACTCCACCCCCACCTCACCCCCTGGCTGGACTCTGGGGTACCGCTGCCCCCCTCCGCCTCCCCAACGTGCCAAAACACAGCAGGCACAGTCACAGCAGCCCATGCCCTTCTGGATGGCCCCATAACACAGGAGTATTAAACCTCATACCCTCCCCTGACATCTAGGGCCTTTTGGAGGGTTCCATAATGATGTTTTACATCCCAAACTGAGCCCCAGtcccccctcttccccttttCTCTGAACCATCACTCCTACCTACTCCTCTACTTGATAGAATTTATTTTGTGATGACTTAGATTTCGTCAAAACAGTTTTGTCATGCGCTCAGcagtaaagcagtgtgtgtgtaaaatggaCTAAACAGACTGGCTGGCTGATACAAAGAGAACAGACTCAACCAGCCAACCAGGCACAACCAGGATACTGACAGACTGGATACATGGTGACAAGCAGCAAGATGCCCCAGACTTCCACACCGATTCAAATGTACCCTGAACTCTGTATAGGAGAGACAGCTGAGGAACAGACACAAATGGAGGGTAAATAGTGCCCTGTTTTTGATTGATTTGGAACGTGTCCACTCCTGGTTTTACTAGTGTAGAAAAGCACTGAGGTAGAAGAGATTTCAATGCATTCTAAGTTATTTctttgttaaaaaatatatttccccCATCCCCATTTTCTTTCTTGGTCCATATCTTAGTCAAATCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137035 lncRNA downstream 1197 18266870 ~ 18267457 (-) True G118887
TU136960 lncRNA downstream 123668 18144638 ~ 18144986 (-) True G118831
TU136913 lncRNA downstream 137791 18127365 ~ 18130863 (-) False LOC110536462
TU136925 lncRNA downstream 191017 18076706 ~ 18077637 (-) True G118805
TU136920 lncRNA downstream 193466 18074743 ~ 18075188 (-) False G118803
TU137039 lncRNA upstream 14180 18286287 ~ 18286566 (-) True G118891
TU137040 lncRNA upstream 16267 18288374 ~ 18288579 (-) True G118892
TU137077 lncRNA upstream 72101 18344208 ~ 18348747 (-) False G118915
TU137081 lncRNA upstream 74379 18346486 ~ 18348747 (-) True G118915
TU137082 lncRNA upstream 76923 18349030 ~ 18349250 (-) True G118916
XM_036940243.1 mRNA downstream 2868 18256000 ~ 18265786 (-) True LOC110536568
XM_036940238.1 mRNA downstream 2876 18256000 ~ 18265778 (-) False LOC110536568
XM_036940227.1 mRNA downstream 17972 18249720 ~ 18250682 (-) True LOC118938207
XM_036940213.1 mRNA downstream 19912 18224491 ~ 18248742 (-) True LOC110534298
XM_036940196.1 mRNA downstream 44354 18198290 ~ 18224300 (-) True pk
XM_021622281.2 mRNA upstream 16634 18288741 ~ 18292776 (-) True LOC110536509
XM_036940430.1 mRNA upstream 227692 18499799 ~ 18516011 (-) False LOC110536706
XM_036940432.1 mRNA upstream 227692 18499799 ~ 18516011 (-) False LOC110536706
XM_021622432.2 mRNA upstream 268943 18541050 ~ 18542623 (-) False LOC110536756
XM_021622453.2 mRNA upstream 287686 18559793 ~ 18564193 (-) True LOC110536762
TU136972 other downstream 103541 18162309 ~ 18165113 (-) True LOC110534274
TU136915 other downstream 115868 18132474 ~ 18152786 (-) True LOC110536462
TU136786 other downstream 265358 17999473 ~ 18003296 (-) False LOC110536375
TU136787 other downstream 265358 17999473 ~ 18003296 (-) True LOC110536375
TU136791 other downstream 348903 17909493 ~ 17919751 (-) True LOC118938160
TU137198 other upstream 155455 18427562 ~ 18433668 (-) False G119000
TU137320 other upstream 204347 18476454 ~ 18476753 (-) True G119087
TU137371 other upstream 268945 18541052 ~ 18542497 (-) False LOC110536756
TU137801 other upstream 365774 18637881 ~ 18646663 (-) True LOC110534340
TU137868 other upstream 527393 18799500 ~ 18801387 (-) True G119512

Expression Profile