RNA id: XM_036940340.1


Basic Information

Item Value
RNA id XM_036940340.1
length 7581
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110536604
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18304486 ~ 18343804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACAGGTGGGGGATATTTGAAGTAGACAGTTGTTGCTGGAGGGAGAAGGAGCCAGTCAGAGCGCACGAAGAGACGTGGCTGGTAGCAGTCAGTCAAGGAGGGTAATATCCCGGTGTGAGCCAACGCACGGGCATACAGAGCGAGAGGAGGGCACCCGTTCCGGACACTTTACACTAGGCTGGCTACATCCTGTGTTACAAATTCATATATGAAGAAAAGCAATCAGGTGGTCCTGAATGGCGAATAAAAGGTGAATAAAACGAGAGTACTGGTGAGACAGACGGTGGTGAGGCTGAGGCAGGCTgtgatgcatggaggaggaggcagaggagacagagagagaaagGTTCCATGACTTTATGGAGACATTTTCATTTGTAATTCCGGAGACATTTCTTCCCATTCTTTCCAAGAAGTGACGCAACATCAACACTCCCAGTAAGCTGGACACAGGaatatttgttgtgttacaagagCTACGCCAGAGCACCCAGACAGACCAAGTCTCGACGTACAGGTTGGCAAGGACACAGGAGAGGCGTCATGGGAGGAACAAAACGGGATAAGAAACCAGACGGGATAAGAAATGTGACGACTGACTGAGCAAAAGAAGAAAACGgcagagaaagaaggaaagagagaaggattgTGTGTTCTCTACTTTCTCAGAAGTGCAGCCCCTAAATTCCTGTTACTATgcctgagagagggagggcagcAGACCAGTCAAAATGAACCCCTACGTCACCTCTCACTTTAGGAGGGATCTCTTTCCCCACTTCCACTTGTTGTAgaggcttctcttctcttctcccctctcttacTGTTTGTGTGACATGACAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGCAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTTTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTAGGACAGCAGGTAACACCTGTCTCTGTGTAAACCTTGGACAACAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACACCTGTCTCTGTGTAAACCTAGGACAACAGGTAACACCTGTCTCTGTGTAAACCTAGGACAACAGGTAACATCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTAGGACAGCAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTAGGACAGCAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTAGGACAATAGATAACACCTGTCTCTGTGTAAACCTTTGACAACAGGTAACACCTGTCTCTGTGTAAACCTAGGACAGTAGGTAACATCTGTCTCTGTGTAAACCTAGGACACCAGGTAACGACTGTTGCCTTGGTATTCTCCTGTGTTGTGCCTTTGTTGCTCCTAGTTAGGGTGTTACACTGTAAACTGTCCTAGGTGATCTGGTTAAGGTGTTACACTGTAAACTGTCCTCAGGGAGCTGGTGAAGGTTTGAACTGTTCCTCAGGAACCTAGTAACATGTTTAGCTTGTTCACTGGGGTCAAAGACTTGCCAGTGTTCGAAACCACAGTCTACTGGAAATGAGTACGGAAGGTGAAGTCTAATATCGCAACCAAACATTTTTTATGTCATTTGGATTTGCTCTGAATTAAACCTTTTGAGTTTTCTTAGATTTTTATCCCTAAGGGATTTGGCATGCAAAAAACTAAAACAATCTCCCTTCCCAGAATATTACCTTTGTTTGCCTCAGTGGGTCGTTGTTTTTACCCAGTATTCCTTGCATGTCCTCTGCACATTATTGCCACATTTTTCCAAGGCAATTAGACTGGAAGCTTTTCTGAAATGGATAAACATGTGTGTTCTCTGTCAAGCAGGGGTGTTGAGTATGACACTTGAACCAAGAGGAGAGAACTAAAACCAACCCGTTTGGAAAAAACAAAGACACGGCACCTCCCGTCCCAGGATTGGACAGGATTTGACCTCTGAAATAACATTTGAGCTCTGAGTTTTCATAGAGGTCATCCACAGGTGTATGCCCTGTGTGCCTGTTacccctcccctctttccccaCAACCGGCCAATAGGATTCTGCTCCTCCTACACATTCACTTTGACTCTATAATAGGTGTTGTATAGAATTAATCCTGGTATCATATGTATAGGATGGTACACAAAAATAGGTACACAGAAAGTACACACAATTGTACATGCCTTGGCGTTCAAGTCAAGTAACTTCATTCTCTCTCCTTTTATTtattgtctttctccctctctttccctcactccctctgttATAGAGAATTCTCCCATGCAGTTGTAGTGGAGAGTAAGTCTCCTTATTGTTGTATACATTTTTACAACACTGAGTTAATGCGATGTAGCTGATCTGGTCAGTAGTCAGTCTGCGCAGTGTGTTCTGTACTGAATTGACAATGCCTTTAGGAGAAACACAGAGACTCTCAGGAATAGGATATTCTGTTAAAAAAGCAGTCACCtgagagaaaacatatttcaaatGTCTCTAAAAGTCTGCTTTTGTTGTGCCAAGAACTCACCACTGACATTTGAGGACTTTTGTGGCTTGGAAAAGATACTTGGATTTGAGGGGAAACTGCTGGTCACAGTCTCCCACTTGTGAGAGACACTGAGTGAGTATTATTTACACAGTGCATGGCTACTGTAGCTCATAAATGTGTTCCAAGGCCCTGTAGCAAAGGAAACATAGATATAAAAGGGTGGAGGAACATACTCTGACTGATAGGAAGTGAATGGATTGGAATTGTGTACCATTATCTGAATCAATAGTCTAAGGAGTTCCTCCTCTGTTTCAATCTGCCTTGTGTATTTTCCATGACCAAACCACTGGGAAGTGAAGATCATGGAACGTAAGAAACAGCATGCTATTCTTTTCTCTGCTGGTTGCATGTTAGATACGTGTTAGAAACATAGACACCGTTTGACTGTACTTTACTGTGGATCTACCCCTGGACTCTGTATTGTCATATTGCACTTTAGTGAATGTGGGGAGTATATATCTTCCTTACTACTACCCCATTGTATCCCCAGCTCTCATCCCTTCAAGCTTCTCAGTTCCTGTAGCCTGCTCAATGTGTTTCCCTCGTGCTGTTTCAAACTGTCAGCAAAACTCCTGCTTCCTCGTAAGATGGCCACAGACTATGGGTCCCTCCTGTTGATACCCTGGACATGTGTGTAACCTCCCTCTTCAGCCCAAAGGAGTGTAAGTACTACAGGGACTATACAGTATTACTGCGAGACTGTGTATCTGCTGCTGTGGAATACGTTTCTGACCAGAGGAGTATATGCAGCAACAACTTGACCACTGAGTTTCCTTCAAGAGAATGGAAGGAAGACTGTGAATCAGGACACTGTAGAGCTGTGAGTAACCCTGACTGTTAATAAAAAGTTAGTGGAACAATGATCCGGGAAGTGAGGGAAGTCATCTACTGCTGGATACAGTTTTCCCTCATGGATTTACCTTTACCACATCAGATGGATTACTTTTCACCATAGAAACAGTGGAACTGGAAAGAAGTACAGAACACCAGGTTCTTATCAATACCTAGGTGGTCATAAACTCACAAGCACATAGGAGTTGAGACTACAGCTTCATCAGCGTAAGACATTGTATTTAGCACCATGGGAGCGGCGCGTGTTAAGCGACGTTTCAGTGCGGTGGTTGACGGGCTGGTAGACGAGGAGGAAGTCATTAAGCTGGCTCTGAGTGTTGCTGACACGGCCAGGGTGGGGGGGAGCACGGGAGGCTCAGGGAGCCCCAccagtctctctcccacacacaacCGAAATGGCAAAGCACTCCCCCTGCAGGGCAACGGCAGCAATGCACGGAGGCCCAGCGGAGCCCTGGAggcaggaggaggggaaggatCGATGAAAGGAGGAGGgcgctcaggactgaggggcggGAGGGGCGGAAGtctggggagaaggggagaaggctGTTCGTCCTCGGACCGAGATTCAACACTGTCGTCCCCTTCCTCCTCAAGCCGCCGGCCCACCCGGCACTCTAGACGCCGGCCCCGCCACCGCTTTGTGGGCAAGGACGGGCGCTGCAACGTCACCTTCGTCAACATGAGCGAGAGGGGCCAGCGTTACCTCAGCGACCTTTTCACCACCTGCGTGGACATCCGCTGGCGTTGGATGCTAGTCATCTTctgcctctctttcctcctctcctggcTGCTCTTTGGCTTCGCCTTCTGGCTCATTGCCGCCGCGCACGGGGACTTCGCCATCCACCTCAACCCCAGCTCGGGTGCCTCTTCCGGGGGAGGAGATGAGTCCGGAGCAGGGGCGGTGGTGGAAGTGGAGGAAACGTGTTTCGTTCAGGTGAACAGCTTTATGGCGGCCTTCCTGTTCTCCCTGGAGACGCAGACGTCCATTGGTTACGGCTTCCGCAGCGTGACCGAGGCCTGCCCCCTGGCGGTGATGGCGGTCGTCTTGCAGTGCATTGTGGGCTGCATCATCGACGCCTTCATCATCGGAGCGGTCATGGCGAAGATCGCTAAGCCCAAGAAGCGTAACGAGACGCTGTTGTTCTCTGACACGGCAGTGGTGGCGCTGAGAGACGGGAAACTCTGCATGATGTGGAGGGTGGGGAACCTACGCAAGAGCCACCTGGTAGAGGCACACGTACGTGCACAGCTATTGAAGCCGAGGGTGACCCCAGAGGGAGAGTTCCTCCCGCTGGACAATGAGGACATCAATGTGGGATTCGACACGGGAACCGACCGCATCTTCCTGGTTTCCCCGGTAACCATCGTCCACGAGATCGACGATGAGTCGCCGTTTTTTGAGATGGACCGTCGGACTCTGGAGGGCGACGCGGAGCTGGAGGTGGTGGTCATTCTGGAGGGTATGGTGGAGGCCACAGCCATGACCACACAGTGTCGCAGCTCCTACCTCGCCTCCGAGATCCTCTGGGGTCACCGCTTCGAACCTGTGCTCTTCGAGAGGAAGAACTGTTACCAGGTGGACTACTCGTTCTTCCACCGGACCTATGAGATTCCCAGCACACCCTCTTGCAGTGCAAAAGAGTTAGCCGAGCAGAAGTACATCCAGGGCTCACGCTCCTCCTTCTGCTATGAGAACGAAGTAGCCCTGCAGCTCGTCTCCCCTGACAATGACCCTGAGGGCAACCCTGGCGTCTGCCCCTCCTCCCTGACCCACCGATCCTCCCTCTCACAACCCACCCACACTAACTAGGGAGGCGACAGGCAGAGGGGACAGGAAGTGACCTAGGATCCACAGGAAGTCAGGgacagacaaagggagagagaggcagaaagagataCAGGCTTCATAGGGAAAGAGACCAACGTAGAGAAAGGTAAGTAGAAGATTTAGGGAAAAGGACAACATTGAGAGACTGAAGTtgagagaggtgtagaaagagaaACAGAAGACACCACAAAGACGCcgagagacagagatactgtatactgtcaaacagagagagaaaaggacagacagataggacagaacaggagagagagggatagaaagagagagagaattgtctTTGAAAGGGGTAGATGGGCTGCTGCTACTCTAACTGTGTTGGCTGATTTGGACATAGCGATCTTTCAGAATCATTATGAACCCGTCTGTCTCAGACCCGTCCCGTCAACCAACCGCTACATTCACCACTGGCTCCAGCACCTAGCTGACCACACATACAACACTGACCCCTATTGGCTTCAGTCTGTACCTGCAGCTCCTGTTCAGTTACAACTCACACTGGACACATGGGAGTAAGGTGAAGCTGCCCCCTAGACACTGAGCTATGACCAGTTTAGTGTTTCTGCCCCCTAATGGTGAAGGTTAGGTTTTGGAGAGgctaagctgatcctagatctgtgcctacggGTAACTTCTACACCAAACCTGTTGATGTTGAATACTGTGTGAGAGAATGAGGTAAAACGGTGTATATCTATCTACACATTGAGGGATGTTTGTTGAAAGACAAGGCATTATTGATATGTTTTTGATTCTGGTGATTTGTGTTCTGTCAAGGTTTGAGCAGGTCTGTTGTGTTAGACTGCTATGTAGCAAAATGGATACAGAGAAACAGCTGGAAATAAGCAGCGGTTTTAAGCTGTTtctttgacttgtactgtatgttgttattcTGTATTTATAATGCAAGACTATTATATATTTGCTTTATTTAATCAAACATGTTGCTTGTTCAACTGGGTGCAGTGTCAGCACAAAACCATATGAGTGCATCGTCTGGTAACATGTTATTTGAAGGTCTACTTCTAAACttatgattgattgtttaatATGGTTAACTATGGTTAACAAACAAAGGTTTATAAGTACTTTGTAAGCAGAACTTTGATTAAAATGTTACCTTATGTTATTTAAAAAATTCTACAGTACCCAGCTGAAGGGACAATCTTATGTTAATGTTTACCTCTGTCTTGAATATGAGATTCTGTCACCTGAGATTCTGTGTTCCTCAAACATTTAACTTTGTATGATTTTCCTCAGTATTTTCTTTATTTAGTTCATTTGCTGAATACTGTATATTTGTTAGAGTTTGAAGGGGAAAATGGGGGatgttaaaggtagactcagcgatatgacgtagatgcagaaagtaaacagcatagtgggtcaatttccacaacaactaagagcgttgaagtgTGAGGCTCAACTTCTCTGCTGTTTAAATACATAGTGAGGGTATTCCATACCGGTAAAATTTGAGTCTATCACAataatgaaaacaaaatgttGCCGAGGCTGAGATGGATGGCTGACACTGAGACCCGCGCGGACAGTAGTGGACGCATAAATTCTGGCCTAATGACAATCACCAAAATGTCATCACACTTGTTGGTGTTTTGTGTAACAGAGGTCTCTTTCCATCCACCACTGTTTGGAGGCTGGAGACATGTTGAGACTGGATGAACATGTAAAGGAGGCCTTTGAAGTGATTgcttgacaatcagatgaaaacatcctGACTGGTGGTTTGTGCCACAGTAGAAGGTAATACATTACCTACATACATTAGTTAAGTTAAATAACAAATCTTTAGTACGAGGCCCACAGAGATCCTAATGAATGAACAGAAATCCTAATGAAAGAATAGAGATTCTATATGGAATGAATGAATAGAGATTCTATATGGAATGAATGAATAGAGATTCTATATGGAATGAATGGatagattctatatgtaatgaatgaataTAGATTATATATGGAATGAATggagattctatatgtaatgaatgaatagagattctatatggaatgaatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136157 lncRNA upstream 22298 18281977 ~ 18282188 (+) True G118240
TU136152 lncRNA upstream 25533 18277408 ~ 18278953 (+) True LOC110536617
TU136136 lncRNA upstream 47319 18255837 ~ 18257167 (+) False G118224
TU136137 lncRNA upstream 47319 18255837 ~ 18257167 (+) True G118224
TU136134 lncRNA upstream 48712 18254431 ~ 18255774 (+) True G118223
TU137084 lncRNA downstream 83927 18427731 ~ 18433698 (+) False LOC110534321
TU137086 lncRNA downstream 83927 18427731 ~ 18433698 (+) False LOC110534321
TU137087 lncRNA downstream 83927 18427731 ~ 18433698 (+) False LOC110534321
TU137088 lncRNA downstream 83927 18427731 ~ 18433698 (+) True LOC110534321
TU137221 lncRNA downstream 133498 18477302 ~ 18481741 (+) True LOC110536658
XR_002475489.2 mRNA upstream 25533 18277661 ~ 18278953 (+) False LOC110536617
XM_021622219.2 mRNA upstream 210343 18090308 ~ 18094143 (+) True LOC110536448
XM_036940106.1 mRNA upstream 217548 18076971 ~ 18086938 (+) False trim108
XM_036940097.1 mRNA upstream 217548 18076974 ~ 18086938 (+) True trim108
XM_036940088.1 mRNA upstream 233254 18052505 ~ 18071232 (+) False LOC110536431
XM_036940351.1 mRNA downstream 5947 18349751 ~ 18433698 (+) False LOC110534321
XM_036940353.1 mRNA downstream 5947 18349751 ~ 18433698 (+) False LOC110534321
XM_036940363.1 mRNA downstream 5947 18349751 ~ 18433698 (+) False LOC110534321
XM_036940371.1 mRNA downstream 5947 18349751 ~ 18433698 (+) False LOC110534321
XM_036940384.1 mRNA downstream 5947 18349751 ~ 18433698 (+) False LOC110534321
TU135495 other upstream 846464 17455765 ~ 17458022 (+) True G117735
TU135611 other upstream 882826 17410632 ~ 17421660 (+) False LOC110520798
TU135623 other upstream 882826 17410632 ~ 17421660 (+) False LOC110520798
TU135631 other upstream 895199 17400013 ~ 17409287 (+) False LOC110520798
TU135467 other upstream 1230785 17073201 ~ 17073701 (+) True G117714
TU137226 other downstream 113554 18457358 ~ 18476354 (+) False LOC110536658
TU137225 other downstream 132620 18476424 ~ 18477134 (+) False LOC110536658
TU137398 other downstream 290035 18633839 ~ 18636041 (+) True G119153
TU137405 other downstream 326709 18670513 ~ 18672320 (+) True G119160
TU137542 other downstream 615332 18959136 ~ 18961465 (+) False G119245

Expression Profile