RNA id: XM_021622383.2


Basic Information

Item Value
RNA id XM_021622383.2
length 1250
RNA type mRNA
GC content 0.46
exon number 5
gene id si:ch211-120k19.1
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18437073 ~ 18439582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTATCCTCACCGCATAACTGAATAACGggtagtgcgtgtgtgtgttatttcaaatAGGAAAATCTATAGGCCTCCATCCCAAAGTGTGAGCGGAAATGATTGCCACCATCTTATTCCATGTAATTGGGAGTTTGGGGTGAACTATTCCTTTAAATATATACACTGTGCTTATCATTGTAAATTCAACTTACCACGGGTAACCAAAGGAGGGAAGTGTGGTTTCAGGAGTGGCATCTATTTTTAGTGCAGCCACATGCGTGAGACCAGGGTCTACTCTGCCTTTGAGAAACGGCATGTTGGTATAGATTTGCTGACTTATACTGTGGACCATTACTTTGAACTTTGACCAGCCAAGCAGACCTCTCTGACCTCTGAGAACCTGCCTCTTATTGGCTGAGAATTCCATTGACCCACCCTTCCGTGTCCTCCAGCAGCAAGCACTGTGAATCTTGTGCCTCTGCCACTGCTGTGTTCCAAGCGGTGGATGAGACAGCTAAGTTGTAAGTAACCATGAGTCGAGCCTGGGCCTTGTTTAAGGCCCACCCCTACATCAGCAATGTGGTCGGATACACAACCCTGTTCGCATCCGCGGACCTCATACAGCAAAGCATGCTTGGAGGGAAACAGAGTGGAGGATTAAACACAGACAAGGGAACACACACCATCCATGGCTCAGAGGGGGCCAAGCTTAACATGGAGGGAACCAATATTTCCACTGGTACTAAAAGTGTCACAACATGGGCTGATATTGACTGGTCCCAGACCGCTCGAGTGGCCTTTGTTGGGTTCTGTTTCCATGCCAATTTCAACTACCATTGGCTGAAGGGGCTGGAGAGGATGTTGCCAGGGGGAGGGGCCAAAAAGGTGTCAGGGAAGGTAGTGCTGGATCAACTGGTTGCTGCCCCCGCTACTATCAGTGCCTTCttcatagGTCTTAGTGTATTAGAAAACAAAGAGGACCCATTGGAAAACTGGAGGGAGAAATTCTGGACTTCATACAAGgcattGAATTTCTCCCTGGTTCCCCCAGTTGCTCGTACAGTGTTTGTGGGTGGCATCACGCTGGTGTGGACAGTATTCCTGTGCCATTTCAGACAGCAGAAAGATGATACACAAACCAAACCCCCCTCTCACTGATATGGATGTTATTGGATGAGTTGTGTGATGACAAAATTGTGACAATTATTTAATTGAATAGCTTTTATGTGCTGCACGCTTATAACTTGATTAAAGTAGTTATTTTAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137084 lncRNA upstream 3375 18427731 ~ 18433698 (+) False LOC110534321
TU137086 lncRNA upstream 3375 18427731 ~ 18433698 (+) False LOC110534321
TU137087 lncRNA upstream 3375 18427731 ~ 18433698 (+) False LOC110534321
TU137088 lncRNA upstream 3375 18427731 ~ 18433698 (+) True LOC110534321
TU136122 lncRNA upstream 104444 18304595 ~ 18332629 (+) True LOC110536604
TU137221 lncRNA downstream 37720 18477302 ~ 18481741 (+) True LOC110536658
TU137237 lncRNA downstream 43228 18482810 ~ 18483250 (+) True G119026
TU137268 lncRNA downstream 99425 18539007 ~ 18539206 (+) True G119053
TU137270 lncRNA downstream 100014 18539596 ~ 18540230 (+) True G119054
TU137227 lncRNA downstream 101432 18541014 ~ 18561243 (+) True G119016
XM_036940351.1 mRNA upstream 3375 18349751 ~ 18433698 (+) False LOC110534321
XM_036940353.1 mRNA upstream 3375 18349751 ~ 18433698 (+) False LOC110534321
XM_036940363.1 mRNA upstream 3375 18349751 ~ 18433698 (+) False LOC110534321
XM_036940371.1 mRNA upstream 3375 18349751 ~ 18433698 (+) False LOC110534321
XM_036940384.1 mRNA upstream 3375 18349751 ~ 18433698 (+) False LOC110534321
XM_021622388.2 mRNA downstream 6498 18446080 ~ 18456914 (+) True LOC110536674
XM_036940404.1 mRNA downstream 17702 18457284 ~ 18478772 (+) False LOC110536658
XM_021622389.2 mRNA downstream 45500 18485082 ~ 18493053 (+) False LOC110536690
XM_036940418.1 mRNA downstream 46488 18486070 ~ 18493053 (+) True LOC110536690
XM_036940438.1 mRNA downstream 84706 18524288 ~ 18538706 (+) False LOC110536732
TU135495 other upstream 979051 17455765 ~ 17458022 (+) True G117735
TU135611 other upstream 1015413 17410632 ~ 17421660 (+) False LOC110520798
TU135623 other upstream 1015413 17410632 ~ 17421660 (+) False LOC110520798
TU135631 other upstream 1027786 17400013 ~ 17409287 (+) False LOC110520798
TU135467 other upstream 1363372 17073201 ~ 17073701 (+) True G117714
TU137226 other downstream 17776 18457358 ~ 18476354 (+) False LOC110536658
TU137225 other downstream 36842 18476424 ~ 18477134 (+) False LOC110536658
TU137398 other downstream 194257 18633839 ~ 18636041 (+) True G119153
TU137405 other downstream 230931 18670513 ~ 18672320 (+) True G119160
TU137542 other downstream 519554 18959136 ~ 18961465 (+) False G119245

Expression Profile