RNA id: XM_036940404.1


Basic Information

Item Value
RNA id XM_036940404.1
length 4709
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110536658
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18457284 ~ 18481741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAATGTCTTTCCTTATCAGGATTGGACTTCCTCCCCGCCGCTCAAACTATCCTGTCCTCCGGTGTTTCATACGCTTCCTGGAGGATATACACAGGCGTCCTACGGAACAAGCAAGCCGGGGAGGTAGAATGAGGTATACTTATCTATGTGAAGGAACATGAACATGGACCCTTGAACTCAAGGAATGACAACCCCCTTCCCTCCGGCACAATTTAGTAAAATTAGAGTTTTTTTCTGTTTGGTTTTCCATTTCTCTTTGATGGAAATTAACTATGATTACGTGGCATTTTTCATTCGGATGACACTTAGAATTGGACATTGATCGCGTAGCTATCTCACTACTGTAATGCCTGCTTGTCTCTTGAAGAGTAATATTTAAATTCTACCTTGACACTACTGCCTCCACATATCTCTCATTTCTGTGGAAGACCGGGATGCTTGACGTCAGCACTTACCACACAATATTCCACTGCAATCTAGTGCTAATTAAATTGCTGTAGCCTCCTTGCAAGACCAAGGTGTGTTCATTTTTGTCTGATTCATAGTTTTAGGATTTGTTTTATGTTATTTAAACTCGTTTGACATGTAGCCGTCTTTTCTAAGCTGCACTTTATTGATAAATATCATCACTACGATATTTCAAAACTGTAATTTAAGCATATCTTtgagttatatatatttttttaatctttAGGGGTGTATATATTCTGTTTTAATTTTAAACTGGAAAGTATATCGTTTTTGTTTACAAGCCTTTTCTGTCGACCATTCCGAAATGGACAAATCTAGAATCTGATAGCGTTTAAGGACAAGGCAGACATAATCTTTAATTGACAGATCTAAGATCAATCCTTGTCTTCGGACATTTGCGTTGTGAAGGCTGGTGTTTTTATGTTCCTCTGTTGGATTGACACACTAAAGAGAAGAATCTCTATCTGAAGACCAGTGGGAGTTATTTTTCTTGGATCGTACAATACTCCTTTGAGTGCAGATGGATTTGACACGTCAAACTCAGAGGTGCTTTTGTGGCGTTGCCTTTGCAATTCAAGCACTGAAGTGGAAGAATGATTTTAAGGACGTTTCAGGGATAAATAACTTGTGTTTTTAAGAAAGACTGACAGGTCTATAGTTTTATTTTCATCTTCCTAGCAGATCCTAAGGAGAGGTGCTTCCATTTGATTCTCCTTTTTAAGGTGGCCATCAGTGGCCAAATGAACTGACGTTGTATCACTACCTGAATTTAAACAGACTTATTCCATCCAACAAACTGCCAACTGCATGAAACACTCACACACCGTCCACCTGTCAGGAAACAGACCTTACCTACCCTAAACCTGAGGGTTGGAAGTCCGCTCCCCGTCAAGCCCCCCACACTAAGGATGCGTTCCCCAGAgccccccatcccatccccaGCTGAGGCCCTACTCCACTGCCAGTTCGGGGGCTGGGCAACGGGCAGCAGCTGCAACAACAGCTGCCCCAACAGCCCTGGAGGTCCTGGGGGTCTgtcatccccttctccctcccccagCCCCTCTGCTGCCTCCAGCTATGCCTTGACCCTCACCCCTTCCCACATCCACGTCCAGCGCCTGGCCCCCCGCCCTGGTAAAGAGGCACGTCTAATACTACCCCTGTCAGAGCTGGCAGGGTGCAGCTGTCCCCGCGCCCCTGCTCCCCCCTTGCTGGTTCTATACTGGTATCCCCCGGGGAGGCGGAGGAAGGGGGTGTCCAGGAGGAGACAGGTGAGGGTGTACCTGGCTGAGGCCAGGGTGGAGGCTGAGAGGTGGTCCACTGCTATACAATGTCTGCTCAGGGGAGTCGCCATCACTGCTGACACGGAAATTGTCAAACGTTTACTGCCCCGTCCTCGAAGGCTGCTGCTATTGGTGAACCCCTTCAGTGGGAGAGGCCAGGCTATGCAGTGGTGTCAGACACACATCCTGCCAATGATCAGAGAGGCTAACATCAGCTACaacctgatacagacagAGCGACAGAACCATGCCAGAGAGTTGATCAAAGAGATCTCCCTGCCTCAGTGGGACGGCATCATCATCGTCTCTGGAGATGGCCTGCTGCACGagGTGATCAATGGTTTGATGGAGCGTCCAGACTGGGAACTAGCAATAAAGACACCTGTAGGTATCCTTCCCTGTGGCTCTGGAAATGCCCTGGCTGGCTCCATCAACCACCATGCGGgTTATGACATGTGCCTTCGGGAGCCTCTCCTCCTCAACTGCTGTTTTCAGCTCTGCCGTGGTGGAGTCAAGCCCATGGATTTGGTCTCTGTGACAACCAGCCCCGCCCCTTCTCAAAATGGCCGCCCGGGTCTTCCCAGAAGGATGTTCTCCTTCCTATCTGTGGCCTGGGGCTTTGTGTCTGACGTGGACATCGagagtgagagGTACCGGGGTCTGGGGTCGGCACGGTTCACCCTGGGCACTCTGGTCCGCCTGGCCTCCCTGCGCTCCTATAAGGGCCGTCTGTCCTACCTGCCCCCCTCCATAGTCGCCACATCCCCAGACGCCATCTCTCCGCCCCTGCGCAGACCCCTGTCCCGCAGCATCACTGAGGGCCTGGAGGGCTTCTGCCACACCCCCATCCAACGCACTAGCTCTGACATGGGCCTCAGCGAACAGAGGAGTCTGAGGAGGGTAgacacggagagggagagggagagagagatggagaggcagagagagagggagaggaggagggagagggccaGGGGAGGGGGAACGGGGGTGGTCAGGGCGAGTAGCTTGgcagaagatagagagagagagatggagggtgaggcGGGGAGGTCAGGGACAAGTTCGGAGAGATCTGGGACGAGTTCGGAGTTGAATGAAAGGGAAGATTGCAGGATGGGAAGGGAGGATGGGATGACGGGGAACATGGAAGAAAGGCCAGATGAGGAAAGAGAAGACGGAACGATGGAGCAGGACTCAGGGGTGATCgaggatatagaggagagagtgaggaatgGGGAAGGTAGCAGCGGCTCAATGGATGGAGTGATGGAAGCGAAGGAGGTTGGAGAGGAGTATGGGAGGGACATGGGGCGAGAGCCCAACGAGGACCCAGAGGGGTGTTACTCGTACCCTGACAACCTCCAGCAGACCAGACTGGCTCTAAGGAAGAACTCTGCCCCTTTCAGCCAGATAGCTAACGCCTTCTTTAGCCAGCCCCTCAGCCAGGAGGCTGACCCCATGTCTGGAGCCTCGTACAGGGCAGAAGAGATGGATCTGAACGAAACATACTTCCAGAAAGAAGCTTACCCACTGGACATCGCCCGAGAGAGAGCTCTCACCATATCCTCTCCCTTCAGACACTCTCCTTTCTCCTTCAAGCCCAAATCTCTGGACCAGAACACATCCCGCCCCAGACCCgtatccctcctccaccacccccacTCCAACTCCCTACCCCCTAAactcccctccctgtccctctccctctctcccacgcccCCTTCCTCCCCGTCCTGTGCctccccccactcctcctcctaccTCGTTCCGCGCCCCAACACCCCCAACTCCACCTCCCCTTCCCCGTCTCTCcagtccccctccccctcctttaCCTTTGACATTGCAGAGCCTGCCGGACCCCTCAAGAACCGCCCCCCCGTCTCACTCCCTTTCAACCCTCCCAGGGATGACCTCCTGCCCCCCTTGGACCAGGCCCTGCCGACCCGGGACTGGGTGACCATCGAGGGGGACTTTGTGCTTGTGCTGGCCATCTACCAGTCCCATCTCGGGGCAGATCTCCATGCCGCCCCCCAAGCCAGGTTTGACGATGGGCTGATCCACCTGACGTTTGTGCGGGCAGGGATCTCCAGAGCCACCCTGCTTCGTCTGTTCCTGGCCATGGAGAGGGGGGCACACCTGTCTCTCAGCTCCCCCTATGTGAGCCACGTCCCAGCCAGGGCCTTCAGGCTGCAGCCCCTCTCCCCACGAGGAACACTCACTGTGGACGGGGAACTGGTGCCATACGGCCCGCTGCAGGCACAGGTCCATCCCTCCATGTCCCGGCTCATTGTCGGTGACTCTGGAGTGAAGATCACCCGATTCTGACAAGGGATTGGCTGACCAGATCAGCTGATACGGCGCTCTCTCCAATTATATAATCTCTGTTGCCATCTATGTtcacagagaaagaggagaaaaaaGCCTCAGAGACTGAAATCAGAGCGAATAATTTCTGGGGTTTAATGGAAGGGATCACCTGCTGAGCAGAGCGGCGGTGCAGGACGCAAGCCGAGGGATTAATAGAGAATTTTAAAAACGGATGAAAACGAGCTTTGTTGCACAGCTGTTGGATTACACTCCGTTTATCCTGAGAAGCCTGTACCTGCATAGCCATGGGAGCAAaataggggggtggggggggcaagTTGAATGTGTATGGGGGAGtgtgtatttggtgcatgtgtgTAGTGTATACATTCTAGTATGCACAAATGGCATGCAGAGATGCACATTTCAGATGTCTTTGTTCTCTATCAAAGCTGTCCTAGAACAGTTCTAGTTCTAGAACAATTTCAGAGGGAGCCACACCCTCATGCAAATGTAGATCCCCTTCCGTATTGGaacctctgtccttccctgtaaTGCCTTAAAGTACAACTCCTCTGACTTTGCCCTTTCTGTCTTATATAAGAAGCCTAAACCTGCGACTCCACAAATCTCCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137084 lncRNA upstream 23586 18427731 ~ 18433698 (+) False LOC110534321
TU137086 lncRNA upstream 23586 18427731 ~ 18433698 (+) False LOC110534321
TU137087 lncRNA upstream 23586 18427731 ~ 18433698 (+) False LOC110534321
TU137088 lncRNA upstream 23586 18427731 ~ 18433698 (+) True LOC110534321
TU136122 lncRNA upstream 124655 18304595 ~ 18332629 (+) True LOC110536604
TU137237 lncRNA downstream 4038 18482810 ~ 18483250 (+) True G119026
TU137268 lncRNA downstream 60235 18539007 ~ 18539206 (+) True G119053
TU137270 lncRNA downstream 60824 18539596 ~ 18540230 (+) True G119054
TU137227 lncRNA downstream 62242 18541014 ~ 18561243 (+) True G119016
TU137282 lncRNA downstream 98537 18577309 ~ 18577580 (+) True G119064
XM_021622388.2 mRNA upstream 370 18446080 ~ 18456914 (+) True LOC110536674
XM_021622383.2 mRNA upstream 17702 18437073 ~ 18439582 (+) False si:ch211-120k19.1
XM_021622377.2 mRNA upstream 17702 18437082 ~ 18439582 (+) False si:ch211-120k19.1
XM_021622371.2 mRNA upstream 17702 18437159 ~ 18439582 (+) False si:ch211-120k19.1
XM_021622368.2 mRNA upstream 17702 18437160 ~ 18439582 (+) True si:ch211-120k19.1
XM_021622389.2 mRNA downstream 6310 18485082 ~ 18493053 (+) False LOC110536690
XM_036940418.1 mRNA downstream 7298 18486070 ~ 18493053 (+) True LOC110536690
XM_036940438.1 mRNA downstream 45516 18524288 ~ 18538706 (+) False LOC110536732
XM_036940446.1 mRNA downstream 45516 18524288 ~ 18538706 (+) False LOC110536732
XR_005035471.1 mRNA downstream 45516 18524288 ~ 18538706 (+) True LOC110536732
TU135495 other upstream 999262 17455765 ~ 17458022 (+) True G117735
TU135611 other upstream 1035624 17410632 ~ 17421660 (+) False LOC110520798
TU135623 other upstream 1035624 17410632 ~ 17421660 (+) False LOC110520798
TU135631 other upstream 1047997 17400013 ~ 17409287 (+) False LOC110520798
TU135467 other upstream 1383583 17073201 ~ 17073701 (+) True G117714
TU137398 other downstream 155067 18633839 ~ 18636041 (+) True G119153
TU137405 other downstream 191741 18670513 ~ 18672320 (+) True G119160
TU137542 other downstream 480364 18959136 ~ 18961465 (+) False G119245
TU137673 other downstream 777814 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 1027879 19506651 ~ 19507338 (+) True G119794

Expression Profile