RNA id: TU137221


Basic Information

Item Value
RNA id TU137221
length 4029
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC110536658
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18457284 ~ 18481741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCCTTTCAACCCTCCCAGGGATGACCTCCTGCCCCCCTTGGACCAGGCCCTGCCGACCCGGGACTGGGTGACCATCGAGGGGGACTTTGTGCTTGTGCTGGCCATCTACCAGTCCCATCTCGGGGCAGATCTCCATGCCGCCCCCCAAGCCAGGTTTGACGATGGGCTGATCCACCTGACGTTTGTGCGGGCAGGGATCTCCAGAGCCACCCTGCTTCGTCTGTTCCTGGCCATGGAGAGGGGGGCACACCTGTCTCTCAGCTCCCCCTATGTGAGCCACGTCCCAGCCAGGGCCTTCAGGCTGCAGCCCCTCTCCCCACGAGGAACACTCACTGTGGACGGGGAACTGGTGCCATACGGCCCGCTGCAGGCACAGGTCCATCCCTCCATGTCCCGGCTCATTGTCGGTGACTCTGGAGTGAAGATCACCCGATTCTGACAAGGGATTGGCTGACCAGATCAGCTGATACGGCGCTCTCTCCAATTATATAATCTCTGTTGCCATCTATGTtcacagagaaagaggagaaaaaaGCCTCAGAGACTGAAATCAGAGCGAATAATTTCTGGGGTTTAATGGAAGGGATCACCTGCTGAGCAGAGCGGCGGTGCAGGACGCAAGCCGAGGGATTAATAGAGAATTTTAAAAACGGATGAAAACGAGCTTTGTTGCACAGCTGTTGGATTACACTCCGTTTATCCTGAGAAGCCTGTACCTGCATAGCCATGGGAGCAAaataggggggtggggggggcaagTTGAATGTGTATGGGGGAGtgtgtatttggtgcatgtgtgTAGTGTATACATTCTAGTATGCACAAATGGCATGCAGAGATGCACATTTCAGATGTCTTTGTTCTCTATCAAAGCTGTCCTAGAACAGTTCTAGTTCTAGAACAATTTCAGAGGGAGCCACACCCTCATGCAAATGTAGATCCCCTTCCGTATTGGaacctctgtccttccctgtaaTGCCTTAAAGTACAACTCCTCTGACTTTGCCCTTTCTGTCTTATATAAGAAGCCTAAACCTGCGACTCCACAAATCTCCATTCAccagaggctggtgggaggagctataggaggacgggctcattgtaaagaCTGGAATAGaattaatggaacggtatcaaacccATAcaaaaccacatgtttgactccgttctatttattccattccagccatgagcccgtcctcctatagctcctcccaccagcctcctctgccatCCAGGTAAATCAGAAGGAACCGTCCACTACAGGAAAAACAAAGCAAAGCTGATGAGCATACTGTGGTGTTAAGTTTGTATTGGTGTGTATGAAATATCTGTGAACAAATGAATTTTATTAGCAATCCCATGGAGATGATTACTCCTAGAATAAACCAGTAAAGTTAGATCAACACTGAAATAAATATAAATCTCATTGAGTCCTTTTACACGGGTATTCCACAATAGGATAGATGAGACTGTTGAACATTAGCCATCATGGTGTATAGTGCATTTGCCTGTTTTTCTTAGCAAAAAGGGTGCATGATGATGATGCTAGATTATGAAGTTGCAACAGAGTGAACACGAGACTGTTGCTTGATCAAGTTTCATGTATGTTGTCACGGAATCCTCAAAGTCTCACAAAGACCCAGAATGCTGGTTGTTTTCAGCAAATAGTCACTAGTTCCACATGTGTAAACTGCCTTTTAATTGTGAGTAGATTCTGAAGTGTTATGCAGCTGCAGAAAATCAACACTCGATTGTATTCGAGTATTTATCTCTTAGATAAAGATTGCTGTTGAAAGGAACAATATGTACTTGTCTTGCTGGTGTTATTTACCACATGACAAGCAGATCGTTTCCATAGGAGACAGTTATGATCTTAAACAGACAACATAAACTCAGTAAATGATTGATTACCATCTTGAGGATTTAGCTAATTACAGACGAGGCTGTGCCTCCCAACTCAAATCATAGCTTACATTTCAGAAATGGTTTTCTCAATGGGATGTagcctatacagttgaagtcggaagtttacatacacttaggttggagtcattaaaatttgtttttcaaccactccacaaatttcttgttaacaaactatacttttccaacaattgtttacagacagattatttcactatttcattatttcactgtatcacaattccagtgggtcagaagtttacatacactaagttgactgtacctttaaacagtttggaaaattccagaaaatgatgtcatggctttagaagcttctgataggctaattgacataatttgaggcaAGTGGAAGTGtacctttggatgtatttcaaggcctaccttcaaactcagtgcctcttttcttgacagcataggaaaatcaaaagaaatcagccaagacctcattaaaaaaaatgtagacctccacaagtctggttcatccttggaagcaatttccaaatgcttgaaggtaccacgttcatctgtacaaacaatactatgcaagtataaacactatgggaccacgcagccatcatactgctcaggaaggtgggaaaaatgcaaatcaatcccagaacagaagcaaaggaccatgtgaagatgctcgAGGAAAccgttacaaaagtatctatatccacagtagaaCGAGTCCTAAAAGGGGAGGTttgggatgcttgcaagccgaagaacaccatcccaaccgtgaagcatggggtggcagcatcatgttgagggggtgctttgctgcaggagggacaggtgcacttcacaaaatagatggcatcatgagaatggaacattatgtggatatattgaagcaacaaatggggcttccaagtggacaatgaccccaagcatacttccaaagttgtggcaaaaaaaGTTGTggtagctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgtggaaggctatccgaaacgtttTGACCCAAGTTCccaaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccattgggaatgtgatgaaagaaataaaagctgaaataaatcattctctctactatttttatgacatttcacattcttaaaataaagtggtgatcctaactgacctaaaaccagggaatttttaggattcaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtacgtaaacttccgacttcaactgtacctagtATGTCTATGTTGAACGGGTGTTTTTGTTAACCTCAAAAACATGATTCTTATGTAtttgtgactggaacaaatttaATATGTCTGGAATTTAATCTCATGAGCATGTATCAATCAGTTATGCCATGTTTGACTGCTTGGGGCTGTTTGGTCCACAGTACCCCTGCCGCTTGATATGGATTAGTCATGTCTGAGTAATTCAAGGCCTCTGTGTTCTCTTGTCTGCTAATTTTGGGCCCTGTTCAAATACTTTCAGGTGCAGCCtttccttattttttttatttaacctttactccTTCTTAGTAATCCCTGATATCACAAGACTTGATAGGTGAAGGCTATGTGATATAATCCTTGCTGATGCAGTGTCGCTAATCAGTTAGTTTATCAGTGATTACTTTAAGGAAAATATTTCATTTCAAACGGGGCCTTGGTCCCTAGACCAAAGCTGTCCCTCCCTGGTCATGCAAAGTAAATTGACAGGATATACACCAAGCTTCCTTCTATGGCCTGAGGATAAAACATTTCACAAGACTGGATGGTGGTTCTCGGGCTGATGTCTGTGCATTATGACAAATAATTACAAAATATTCACTCTCAATTTTTAGAGACTCGCTGTGACAATTGAAACCTGCTGTACTGCTCAGTGTCTGTGACCAGGGTCCTACAACTGGGATTTCGGgaaaactttcaataaattccctggttaaCTGAATTTTGCAACCCGAGGTGTGACCCCTTGCTAATGCCAGTAAGATGTATTGTCTATAGATGGATTGGCCTGTAATAAACTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137084 lncRNA upstream 43604 18427731 ~ 18433698 (+) False LOC110534321
TU137086 lncRNA upstream 43604 18427731 ~ 18433698 (+) False LOC110534321
TU137087 lncRNA upstream 43604 18427731 ~ 18433698 (+) False LOC110534321
TU137088 lncRNA upstream 43604 18427731 ~ 18433698 (+) True LOC110534321
TU136122 lncRNA upstream 144673 18304595 ~ 18332629 (+) True LOC110536604
TU137237 lncRNA downstream 1069 18482810 ~ 18483250 (+) True G119026
TU137268 lncRNA downstream 57266 18539007 ~ 18539206 (+) True G119053
TU137270 lncRNA downstream 57855 18539596 ~ 18540230 (+) True G119054
TU137227 lncRNA downstream 59273 18541014 ~ 18561243 (+) True G119016
TU137282 lncRNA downstream 95568 18577309 ~ 18577580 (+) True G119064
XM_021622388.2 mRNA upstream 20388 18446080 ~ 18456914 (+) True LOC110536674
XM_021622383.2 mRNA upstream 37720 18437073 ~ 18439582 (+) False si:ch211-120k19.1
XM_021622377.2 mRNA upstream 37720 18437082 ~ 18439582 (+) False si:ch211-120k19.1
XM_021622371.2 mRNA upstream 37720 18437159 ~ 18439582 (+) False si:ch211-120k19.1
XM_021622368.2 mRNA upstream 37720 18437160 ~ 18439582 (+) True si:ch211-120k19.1
XM_021622389.2 mRNA downstream 3341 18485082 ~ 18493053 (+) False LOC110536690
XM_036940418.1 mRNA downstream 4329 18486070 ~ 18493053 (+) True LOC110536690
XM_036940438.1 mRNA downstream 42547 18524288 ~ 18538706 (+) False LOC110536732
XM_036940446.1 mRNA downstream 42547 18524288 ~ 18538706 (+) False LOC110536732
XR_005035471.1 mRNA downstream 42547 18524288 ~ 18538706 (+) True LOC110536732
TU137225 other upstream 168 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 948 18457358 ~ 18476354 (+) False LOC110536658
TU135495 other upstream 1019280 17455765 ~ 17458022 (+) True G117735
TU135611 other upstream 1055642 17410632 ~ 17421660 (+) False LOC110520798
TU135623 other upstream 1055642 17410632 ~ 17421660 (+) False LOC110520798
TU137398 other downstream 152098 18633839 ~ 18636041 (+) True G119153
TU137405 other downstream 188772 18670513 ~ 18672320 (+) True G119160
TU137542 other downstream 477395 18959136 ~ 18961465 (+) False G119245
TU137673 other downstream 774845 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 1024910 19506651 ~ 19507338 (+) True G119794

Expression Profile