RNA id: XM_036940438.1


Basic Information

Item Value
RNA id XM_036940438.1
length 5355
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC110536732
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18524288 ~ 18538706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAAAAAGTTTCTAGTCATTATTCTCTCTACCGCTATTCATCCCGGGTCCCGTTTGCTCATTGTTATTCTgcccgagtgagtgagtgagtgaatgagagagggagaaagagagggatagtgaGCGAGAGGGTGAACGGGAGTGAGGACATtgtgagagaaaaggagagtggtaaagagagacagagaacggaAGAGACCTGAGGTTTCTAACGGTAGGGAGTTTGATGCAGCGGTCGGGGTTTATTCGCGGTGAATGTTCTGTCCGGGGTGGTGCGTGAAGGCATGTTGCTAATCGGCTCAACAGTGAGTAGAGGTACAGAACTGCACCAAAAGTCTGACGCCGATTTGTGTGAGTAATAATTaaaaaagggagagggagagagcgaaggCGGGGGGGAGGTTGAGATTTAGTGCACTGCTGGGTGAAACAACCCCCACTAACGAAGGGGAAAGCAATAGAAGAAAAGGAAAAAAAGACAAAAGGCAAACGGCGTTTCGgtcatctgtttttttttctcccaacaATGAGCTCAGAAAAGGGGACTTCAGTCTGCTGTTGTAAAGCCTAATACCCTCAGATACAGGGGAGGAGACTACAATACATAAACATTCTGAAACACCATGTCTCGTTCAGACGAGGTCAACAAGATGACAGAAAACGTGTATAAGGGGATTCTGGACCAGTTCAACCCCAGTCTGAAGAACTTTGTGACCATGGGGAAACACTATGAGAAAGCCCTgacagGAGTGACGGTAGCAGCCAAGGGATACTTCGATGGTCTGGTCAAACTGGGAGAACTGGCCAGCGACAGCCAAGGGTCCAAAGAACTGGGAGACACGTTATTCCAGATGGCCGAGGTGCACAGGCAGATTCAGGTTCAACTGGAGGACGTGTTGAAGCTGTTCCATTCTGAGCTGCTGTCCCAGTTGGAGCAAAAGCTGGAGTTGGACATTAAATATCTTACCGCCACGTTGAAGAAATATCAGAGTGAGCGCAAGTCGAAGTCGGAATCTATCGAGTGCTGCCAATCACAGCTCAAGAAGCTGCGCAGGAAGAGCCAGGGCAGTCGCCACCCCAACAAGTATGGAGATAGGGAGATGCAGTATGTGGAGCTAATGAGTCGTCGTCAGGCTGAGCTGGACACGCTGGTTGCTGTGGGTTACCGCTCAGCgctgacggaggagaggagacgataCTGCTTCCTTGTGGACCGCCAGTGTTCAGTCACCAAGCTGCTCATCAACTACCACtgcaagGTGAGAGAGCTCCTGTCACAGAAGCTGTCCTCATGGCAACAGTCATGCTCCCAGCCAACCAGACTACCTGAACGGGCGCTCAACCTGCTGCGTCACACCGCCCCTCAGGGCTCTGGGGCATCTGGGATAGCTGAGCTCCTCCGACATGCCAAGCTGGGCGCTGCACAGCCAGAACAGAGGCTGTCAGTACAGGAGGTGCCTCCCTTGTTGAATGGTGGCTCCAAGCAGCAGAGACCCATCCCCTCTTCTTCCCAGAGTGACATCTCCCCTCCCCAACATTCCCCCGGACCCCAGACCTTCCGCTCCCTCGCTGCCACTGGAGGGGCTATTGGAGGGAGTGGGGCAGGCTCCCCTCAGCAGATCAGCACGCCTATTAGTGTCTCAGCTAGCCCCAATGCTAACAACAACACAAGTGCTAATGCTATCACTACTGCTAACACTCCCATCACTTCATCCACCTCCTCCACGGTTGGCTCCAGCCAAGCCCAGCAGACCTCTCTTCTCCTGGCCACCAGCACCTCCAGCCTTTCTCCTAGTCTGATCCCCTCCACTGTGCTTTCTCTCAGCCAGGGCTCCCCATCCTACTCCTCCCTACAGGGCCTGGCCCTGCCGTTGTCCCTCAGTGCCCCTCACAGTCCTCCACTACCCCACAGTGCACCTCTTTCCAGAGCCATAACCCCCTCGCTGCATCACCAGGGAGTGCAAGGAGGAGGGAACACAGCATTGCGGTCCCATAATCCCATGCTGATGAAGGCAGCAGAGATGTATGGAACGTCTACACTGCCGTTGCCAAGGAAACCAGTCAGCGAGGCCCGGGTGGGAGGGTTTATGGGTTCCACTCTGCCCAGAGACcgagttctccctctctccagcccgTCTCGTGTGGAAGCCATATTTGCCCACGCTCCTGGGGGTTCAGAGGGCAGTGGAGTGGGCGGGGCCTGCTTACTTCACTTCCTGCCAGGCGACGCTCTCAGCCTCCTCATCTCTGAGCCCAGAGACGGGTGGCACTATGGTCAGAACGAACGGACGGGACGGAAAGGCTGGTTCCCTTTCTCCTACACTCAACCCTACCCAAACACCTTGGATCCCCTCGACAGCAGCTCCCCGCTCCTCTCTAAGGTCAACAGTACCAGTACGGGTCAGTTAGACAAGCTGGTCTCCCctggcctgcctgccctgacccctgagtcTGAGGAGGAGCGCTCGTTCCCCCCTCAGAGGGTCAGCACCTTCCGCCCGCGCCCATACAGCATGGCCGACTCCAACCAGGTCAGCCTGAGGCCGAAGGTCAGAGGTGAAGGGGTAGAGTGGGCAGGGCCCCCTGACCGACCGGCTCTGTCAATGCTGATGCAAGAGCTCTCGTCAGACTTcgcctctcctccaccctccccaacCTGGACCAACCCATTTGCCCATGTCCGGCTCAGAAAGACGGTGACCAACGATCGCTCTGCACCCATCATCGAATAGGACATGGTCTCCTTGAACAGGCATCCAATGGAGAGGTGTTAATAGGAAACATTCATGTGTTTTGAGTTTGTTCTCAGAGTCCAGTAACTGTGTTGGTTGAGTTCTCAACTGTTCAGCCTTAAGAGAAAGCCTTAAGTAAACCTTTCTGTTCATGTTGGTTATTTACAAGTGCTGATTAGATGTGTATTAATCAGGCCTAAGTCAAAATACAGACACTTATGTGGTGTTATTTTGAAGATAGAAGAATCAAAGCTGAAATTTGAGTGCCAACCGTAATTGTTAAAGACCCTTTGGACAAAATGAGAACTTGATTAAAAATCTACCATAGTATTTGAGAATTATAGAGTAAAAAGATGAGTGTGAGTTGGAATTTGAAAAGCTCTGTGATGTTAGTAAAAACACAAACAGATGAGGGCCATTTTGTCAGAATGTCCAACATTAACATTTGAGCCCTGGGCATTACTGATAATTTTATAATGTTATTTTCATTTTACAACACTTTTCTAAAAGTAACCTTGGTAGAAAATGTTTATTATGTTTTTTTGTCTGTACCCTTTCAGGGACTGGTTCCTGGTAGCAGCCTGTAGTTGGGTAATAGTTTAATGAATTATAGCATACTTTACTTGTACCATTAGGAATTGTCTTAAAGGACAGGCTCCTGTTTTATCAGTATTTTCATCGAGGAGGATTTTTGAGAAGAGAGTTGTGCAgagatatgtgtgtgtatgatcCAGGAAAATCCAAACATGTTGAAGAATTGTCATAAAATGTTTTTCATTGTTGGGATTCAATAAGAGTATGTTTAAACACATTGTTAGCTAGGCAGATGTAGTTCCACGATAGATGCAGACCTACCAATCACTTTGTACAACTTAATTTACATGTTCTCTGTATGAAGATTTAAATAAAAGTGTATTGATGTTGCTTACTGATGTCATCAGCAAAATGCTGGGTAGGAATAAGTTTAAACaccaatattttttaaataatttgtttTAATGTGCGGTAGGATTTGTATAAGGAATTATATTTTTAAGATCAAGTGATCAATTTACAAAGGCAGTTGATGTGATATGTTATACACAGAAATATGTTGCATTGCAAAGCTATTGCTGCTATGTGTAGATTGTATTGAACGTTTACCTTCAAGAGTCTCTGTTATCGACAAACGTATTAATAGAAGTAAGAAGGAGCAaccgtacagatgtaggatctttatttgatcactcttttgttggtGAGAATGTTCCTGCgtagcaggaaatgcaaacttgtagtgtattttagttttaaaaaggcttctaaagtgtgtctatcaacccctacaaaaatgtagattaatttacatttcttgttgctgcaggattattttcctgcaacTGGCTAAAatgaagatcttacatctgtaacAATGCATCCCTGTGGGGTGAACTGTACTTCCATTTGTATTGGACAGGTAGAAGAGGAAAGAAACAGTGGAGGGTTTGGAGGATGGGTTTTCCTGGACAGTAGGTTTGAGAAATTGGCATTGTGTTGAGGGATAAAAGTATAAGAAAAGAGATGGATTCAACTCGCTTGTTTTTACTAGTGTCTTCTCGATTGATTTAGAATTCGACTCCAACAGATTGTTCACATCTAGCAGATTTTAGCTGCACGTTTACCAATTGCAAACCGTACAGAACCTTATTTAAAGGGCGAAGACTGATTGTGTTTATGAAGTCTAACTTTGAAAGTGTTGAGGAAAGTATTTGGAAAGTGGAACAGTGTGTGAGCAAGTGTCAATGGTAAACTAGATGTAGAAAGTAGTatatttctctcactttctccatGTCTGGTGTCTCTCTAGTCTGTCATCTGGTATCTCGCTGGTGTCTCTGTCATCTAGAAAACTGCAGTTGAGAGATTCAGGGTGGAAATATGTGGCTGGGAAAATGGAGTTTCTCTTTATGATCTTTATTCTGATTTCCGGCCCTTACAGTGTATAGTTCCTTCTCTCCGCATGTTTCTGTATCGTATTAACTTGCATCTCTAACCTAGCCTGTGAAATGATTGACTTTCTTGCTATGGTAATTCTAACacacaataaaaaaacatttctgtTGATTTAAATACTGAGTATAGTGAAATCACATAGTTGAAGTTTACTTATGTTTGTACaaattgcacacaaaaaaaacagtttttgatcTTGTTTAACTTTGTTATTCCTTAACCTTGCACCTTTTCACCGTCCTAACCTTCTTCAAAATATGACCTTTCAATGTCAATCTAGCTATATGAGAATGGGATCCAGTTGTAAAAGGCAAAATAAAGGTGATGCTGTGGTGACTATTCAGGATCTTATATTCAGGATGTCTCTGTTAGTAGGATTGTCTTAACTACGTGTTTAAGAACGAAACAATTGCCTCTGCCCCTACTTTTATTTCCGTCTTTTAATTTGTTTTGTTATATTATTTTGTTACTTCATCTGTAGCTTTTTTCTCTTTAAAACAGCATTGCCTTTCCGAGACACACAACAATCATGGTCACAGTATAAAAccttacaaatacacacacattccTGATACCACTGTTATTGTATTTGTTTCCAATGAATActtcaataaacatgttaatCACTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137237 lncRNA upstream 41038 18482810 ~ 18483250 (+) True G119026
TU137221 lncRNA upstream 42547 18477302 ~ 18481741 (+) True LOC110536658
TU137086 lncRNA upstream 90590 18427731 ~ 18433698 (+) False LOC110534321
TU137268 lncRNA downstream 301 18539007 ~ 18539206 (+) True G119053
TU137270 lncRNA downstream 890 18539596 ~ 18540230 (+) True G119054
TU137227 lncRNA downstream 2308 18541014 ~ 18561243 (+) True G119016
TU137282 lncRNA downstream 38603 18577309 ~ 18577580 (+) True G119064
TU137283 lncRNA downstream 40014 18578720 ~ 18579099 (+) True G119065
XM_021622389.2 mRNA upstream 31235 18485082 ~ 18493053 (+) False LOC110536690
XM_036940418.1 mRNA upstream 31235 18486070 ~ 18493053 (+) True LOC110536690
XM_036940404.1 mRNA upstream 45516 18457284 ~ 18478772 (+) False LOC110536658
XM_021622388.2 mRNA upstream 67374 18446080 ~ 18456914 (+) True LOC110536674
XM_021622377.2 mRNA upstream 84706 18437082 ~ 18439582 (+) False si:ch211-120k19.1
XM_021622420.2 mRNA downstream 3779 18542485 ~ 18545382 (+) True LOC110536755
XM_036940478.1 mRNA downstream 6300 18545006 ~ 18556597 (+) False LOC110536748
XM_036940462.1 mRNA downstream 6712 18545418 ~ 18556597 (+) False LOC110536748
XM_036940452.1 mRNA downstream 6820 18545526 ~ 18556597 (+) False LOC110536748
XM_036940483.1 mRNA downstream 6820 18545526 ~ 18556597 (+) False LOC110536748
TU137225 other upstream 47154 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 47934 18457358 ~ 18476354 (+) False LOC110536658
TU135495 other upstream 1066266 17455765 ~ 17458022 (+) True G117735
TU135611 other upstream 1102628 17410632 ~ 17421660 (+) False LOC110520798
TU137398 other downstream 95133 18633839 ~ 18636041 (+) True G119153
TU137405 other downstream 131807 18670513 ~ 18672320 (+) True G119160
TU137542 other downstream 420430 18959136 ~ 18961465 (+) False G119245
TU137673 other downstream 717880 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 967945 19506651 ~ 19507338 (+) True G119794

Expression Profile