RNA id: XM_036940495.1


Basic Information

Item Value
RNA id XM_036940495.1
length 3787
RNA type mRNA
GC content 0.52
exon number 18
gene id LOC110536748
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18545006 ~ 18556597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAATCCACATTTTGTGGGTGGGATTTATCTACCGTCCATCTTTAGTGTACTGTACAGCCAGATTGACGAAAAGAAAACACAAATTGGAAGTAAAGAAGACTGGGGAAATAGTTTTAGTTCTAATTGAAAGAGACAAACGAAAAGCCCAAACCCTAGACGGTATGAGGACATTGTCGTAGTGAAGCCATGGCTGATAAGAGAAAACTCCAAGGTGAAATTGACAGATGTTTGAAAAAGGTAGCTGAAGGCGTAGAACAGTTTGAAGACATTTGGCAGAAGCTTCACAATGCAGCCAATGCCAACCAAAAGGAAAAATATGAGGCAGACCTTAAAAAAGAGATTAAAAAGCTACAGCGATTGAGGGATCAGATAAAAACATGGGTGGCATCAAATGAGATCAAAGACAAAAGGCAGCTAGTGGATAATCGCAAGGTCATAGAGACGCAAATGGAGCGGTTTAAGGTGGTAGAGCGGGAGACAAAGACGAAGGCCTACTCTAAAGAAGGCCTGGGGCTCGCCCTGAAAGTGGACCCAGctcagagggagaaagaagagacGGGAAACTGGCTAACGAATACGATAGACACTCTAAATATGCAGGTGGACCAGTTTGAGAGTGAGGTGGAATCCCTCTTCATTCAAACCaggaagaagaaaggagagaaagagAAGCAGGATCGCATTGAGGAGCTAAAGAGGTTTATAGAAAGGCATAGGTACCACATTCGCATGCTGGAGACCATCCTGCGCATGCTAGACAACGACTCGGTGCAGGTGGACTCCATCCAGAAGATCAAGGACGACGTGGAGTACTACATGGAGTCGTCACAGGACCCAGACTTTGAGGAGAACGAGTTCATTTACGACGACCTGGATCTGGAGGACATCCGTGAGTCGCCCATGGACAGCCAGGAGCTCGATGACGAGTCCTGGGATGATCATGATGATGATGCTCATGCTATCAGCTctGCAGCGCTGGTGGCCACCTCTCCAACGGGCATGGGGAACATAGAGGATGAGATGTTCCTCCACTCGAGCAGCActcccacctccaccacctcctcttcccccatccctccatcctcggCCACCTGCACTGCTGAGAACTCTGAGGACGATAAGAAGAGAGGGCGGTCGACAGACAGGGACGTTAGTCAGTCTCCTGCGAAGAACGGCACTTCCTCCTTGTTGTTGTCCTTTTCCTCGTCCGCCAATTCCgggtcctcttcttcctcctctcttgtATCCATGGCCGCCATTGTCGGAGGCAACCCTGGGGTTCCCACAAGCAACAGTCTAATAGGAAGCTTCAGCAGCGCCGTACAACAACATCAGCCTCAACCTCCACAGCAACCAGTCCTGCAGCCACtgcaacaaccacaacaaccccAAACAAAACCTTGCACCCCCAGCCCACCCAGCCACCCCCTTCTCTCCAccgccccctctctccccacacccACCACACCCATCTCAGCCTCCCCAAACTCCCTGCCCCAGGTCTCGCCTGGTCATATCCTCAACTCCAGCCTAGGCCTTGGGTTGGGCCTGGGTAAAGTTGGCATGACGGGGACAAGCAGTGCCAACTCAATGTCTGGTCTGGGCCTGACTGGGATGTCTGCCTCTCTGAACACCATGGCAGGCCTGCTCTCTGGGTCCACCCATGCCCCTTACGCCCAGGCAGCCGCGTTGGGAGGCCTGGGTCTGAGTACCACTACCCAGTCCAGTGTCTCACTGGAGAGCTCCTCCATCCCCACCTCTTGCTCCAGTGGAGTGACCACCAACGGGGCTGGGACAGGCCTGGGCCTGCTGGGGTCCAGCCCAGCACACGGCTCCCTGACTGGGGGGATCCTGGGCCTGGTGCCTGGGCAGAGTGTGATCCCTGGGCCCCCTCTGATCCCTCTCAGCCCGGTCGGTGCTGCCCCTGGGGGGGCAGTGGGGATGATGGGAGGAAACGGAGGAAGCATGGGGCCAATCGGAGGAGTAGTTGGGTCGAACGCAGCCCCTGCCAGACCGCCCAGTGGACTGAAGCAGAACGGAAGCACAAGTTACAGTGCTGTGGTGGCAGAGAGCACAGCAGAGTCCGCCTTCAGCACACCCAGCCAATCACAGAGCAGCCAGCCTTCCTCGCTGACCTCCTCAGCCAGTCAGCAtatGGACAACGGTCCCAGCCTCATCAGCTCCATCACCTTGCCCCCCAGCTCTCCGTCCCCCTCGTTTTCCGACAGTATCACCGGTGGAGGGAGTCTCCTCAACGGACCCCACTCCTACACACAGGCCTCTGAGGGCCTCAAGgcCCCGGAGCCTCTGAGTTCTCTGAAGGCAATGGCTGAGAGAGCAGCATTAGGATCAGGTCTGGATGGAGAGATCCCCAACCTGCACCTCACAGACAGAGACATCTTCTCTGGTTCGTCGGCTGCCCCCGGCACGCCCGCGGCCCCCCAGCCCTCCCTGTCGGAGGTGAGCATCCCCCCTTCCCTGGGGGTGTGTCCCCTGGGTCCCACTCCGCTCTCCAAGGACCAGGTGTACCAACAGACCATGCAGGAGTCTGCTTGGACACACATGCCGCACCCCTCAGACTCCGAGAGGATCAGGCAATACCTGATGAGGAACCCATGCCCCACCCTGCCATTCCATCATCAGATGCCCCCCCACCACTCAGACTCTATAGAGTTCTACCAGAGACTGTCCACAGAGACGCTCTTCTTCATCTTCTACTACCTGGAGGGCACTAAAGCTCAGTACCTGTCAGCCAAGGCTCTGAAGAAGCAGTCGTGGAGGTTCCACACCAAGTACATGATGTGGTTCCAGAGGCACGAAGAACCCAAGACTATCACTGATGAgtttgaacaggGCACTTACATCTACTTTGACTATGAGAAGTGGGGTcagaggaagaaggaggggttCACCTTTGAGTACAGGTACCTGGAAGACCGAGACCTGcagtgacagagggaggagaaacGTGCTGCTGTTGACATTCCGAGACTGACCTAACTCCATGCTGTGGATAGAGATTGTGATGTGTAGTAGAACCCTGCTCCTAAAATGGAGGATGTTGTCTGTATAGGCAGCGtctaatggcaccctactccccaCAGTGTACTACTCCGGCCCAAAGCCCTAGTAGTGGGGAATAGAACCCCCTACCTATAacgggctctggtcagaagtagtgtactaGGGGGGGAGTAGGGAGTCGTCACAGATCTGTGCCTGTCTGAACACTCAGTATGTGGCATTACATTAGGAAGCTCCATGCATGTTccatgttgtttttgtttttctttctgtttcaacaacaacaaactctGTACTGCCCCCAACTGGAGTATAGAAGCCTTGGACTAAAAAACAAGCAAACATACATTGGATTTGGTTACAAGTGAAAAAAGCCCATCTTGCTTGAATTGACTGTAATTAGTGGTTTAGAATGGAGACATACAGTTGTCTAGCTAGCCAGCAGACAGGGCTCCTTTTAAGATGTTATGATGCCTGTTGATTAAGTTCACTATTAGAGAGTGAGTGATTATCAATAGTTTTATTGATGTCGTCTTGGTCGATAAAAAGCTCTGATTGAGAATGACCACATGGCCTCTTCCTTTTGATGGGGATAGAGAGGCATTATTGGACATTGGATTAAATTGCTATGCAATTGAACtggtctctgcctccctctctctttacaaataaaatattttaaagtTTAACTGTGAAAGGAAACGCATCGTCATTGGGGCATTATGTTTGTGAGATTAGCTAATAAAGGATTTGTACCTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137270 lncRNA upstream 5296 18539596 ~ 18540230 (+) True G119054
TU137268 lncRNA upstream 6320 18539007 ~ 18539206 (+) True G119053
TU137237 lncRNA upstream 62276 18482810 ~ 18483250 (+) True G119026
TU137221 lncRNA upstream 63785 18477302 ~ 18481741 (+) True LOC110536658
TU137088 lncRNA upstream 111828 18427731 ~ 18433698 (+) True LOC110534321
TU137282 lncRNA downstream 20712 18577309 ~ 18577580 (+) True G119064
TU137283 lncRNA downstream 22123 18578720 ~ 18579099 (+) True G119065
TU137284 lncRNA downstream 23607 18580204 ~ 18580412 (+) True G119066
TU137289 lncRNA downstream 29279 18585876 ~ 18586079 (+) True G119071
TU137294 lncRNA downstream 35914 18592511 ~ 18592815 (+) True G119076
XM_021622420.2 mRNA upstream 144 18542485 ~ 18545382 (+) True LOC110536755
XM_036940438.1 mRNA upstream 6820 18524288 ~ 18538706 (+) False LOC110536732
XM_036940446.1 mRNA upstream 6820 18524288 ~ 18538706 (+) False LOC110536732
XR_005035471.1 mRNA upstream 6820 18524288 ~ 18538706 (+) True LOC110536732
XM_036940418.1 mRNA upstream 52473 18486070 ~ 18493053 (+) True LOC110536690
XM_021622495.2 mRNA downstream 49477 18606074 ~ 18621580 (+) False LOC110536807
XM_021622506.2 mRNA downstream 49478 18606075 ~ 18621580 (+) False LOC110536807
XM_021622489.2 mRNA downstream 49479 18606076 ~ 18621580 (+) False LOC110536807
XM_021622501.2 mRNA downstream 49480 18606077 ~ 18621580 (+) False LOC110536807
XM_021622528.2 mRNA downstream 49480 18606077 ~ 18621580 (+) False LOC110536807
TU137225 other upstream 68392 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 69172 18457358 ~ 18476354 (+) False LOC110536658
TU135495 other upstream 1087504 17455765 ~ 17458022 (+) True G117735
TU135611 other upstream 1123866 17410632 ~ 17421660 (+) False LOC110520798
TU137398 other downstream 77242 18633839 ~ 18636041 (+) True G119153
TU137405 other downstream 113916 18670513 ~ 18672320 (+) True G119160
TU137542 other downstream 402539 18959136 ~ 18961465 (+) False G119245
TU137673 other downstream 699989 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 950054 19506651 ~ 19507338 (+) True G119794

Expression Profile