RNA id: XM_036940549.1


Basic Information

Item Value
RNA id XM_036940549.1
length 1796
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110536773
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18587019 ~ 18590352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACGTTATGACGTAATACTATTTTCGGGTGTATGTTTCCGGTTGTGGTTGAATAGCTCTTTTGTTGCTTGTTTACCTTTCagatgtgttaaatatattttctttGGTTTTATGCAAATATTTTATTCAGTCGGTAACAGCTGTACAAAACCCAGTGTCAGAATTACATCTCTGCGATTGAAATAGCTgttaaaatgttgttgtttttacaggAAATAGGTtaaggctagctaacgttagctagctagcgaactgGAGTTACAGTAGAGACTGACTGAATTGCAAACAACAGAAGTCAGGGTATGTTACGTTTTTGACACATTTTTGTTTAACTGTACAAGCCCTGGTCAAAACAAACACTCAACTTCAGAAGACAAATGAATATTCTACCAAAAAAGAGCTGGCATGTTCGCAACAAGGACAACGTCGCGCGCGTGCGCCGGGACGAGGCACAAGCCGCAGAAGAGGAGCGAGAGGTCCAACGCCGTGTGGAGCGAGCAGAGCAGGAGGCGCGAACAGAGCACCTGAGACAGAAGTCACGAGCTGCACTTCAACAGTCTGGAGCATGGAaggatgaaggagagggaggtgagagaggaggggaggggagtggaggagtggtggaaCACCTCAATCTATTTCCTCTGGAGGAGTCATCTGAGAAGAAAGGAAATGCAGAGTACCTCAAAGACCAGAAAGATGAAAAGGAGCGCGAGGAGCGTGCTATTGGTCTGCTAGTGTCCCTAGGCCCCCAAcccgggacagaggtaactccaTGGTACATGAAAACAGGCcaggaagaagagaaagacaaagaaaaggagaaagagaaagacaacaaAGGAAAGAGACTGCCACTCAGtcaagaggagaaggagaagagagacagacgaCTGAAAGACATGCTGGACCCCTTGAAAGAGATGAAGAAAGCACTGGCGGTGAAGGATAGAAAAGaacataagaagaagaagaaggagaagagggatagaggggagaggagaagcagTGGTGGAGAAAGCTCTATTGAAAGGTTGCGAGCGGAGCGACTGCAGAGAGAggcggaggagaagaggagagcccAGGCTCTGCTGGACCAGAAGAATGGAACAGGGAAAGAGAAGGAGCGAccaagggagacagaggagagggaaatgCCGTACAACAGTGCTTATTTCCCAGAGCTGGCCCGCAAGAGGCAGAGGAAAGACCGCAATGCCTGGAGAGATGGCATCTTTTGAAGTCATACATCATGCGATCATTGTTTGGGCAACGGACAGAGAACATTGAGGCATTCAAGATACATTTATTAGTATGTGAAAGACGCCGAAGACTTCGACAAGGACTAGAGAGCCTGGAAGGTTATTCAGTTGTATCCTAAGCAGACTTATTAATGTTTGTTGTCATTGAATGAACAATGCTATTTCTAATGAGGTAGAAAAAGAAAGGAAACCAATCAAGAGATTTGGGACAGCTGAGTTGGAGTCTGTCTGGCACCCTGCTCAAGTGTGAGACAATACAGAGATCATTTTGCTCCACAACACAAGACCACTGTTCAAGTTGGAGTGTGTTGGATGTTTTACTATTGATGGCAACATTGTGTCAATTCAAGTCTGTCAAGTCTTTTTTGTTTCTGATAATAGCATGTGCCAAtttaggaggtgtgtgtgtgtacatgcatctGTTCTATTTCACTATCTGATGTAGACAGAGTTTAGGGTGGTTGGCTCAACTATTATTGCACATTTTCCATTTCAATTAATTCAATAAAACTGTTAGGCCTGCCAAATAACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137381 lncRNA downstream 2954 18583862 ~ 18584065 (-) True G119137
TU137372 lncRNA downstream 43843 18541052 ~ 18543176 (-) True LOC110536756
TU137369 lncRNA downstream 48373 18536012 ~ 18538646 (-) True G119126
TU137343 lncRNA downstream 71022 18496988 ~ 18515997 (-) False LOC110536706
TU137342 lncRNA downstream 85094 18497045 ~ 18501925 (-) True LOC110536706
TU137393 lncRNA upstream 9843 18600195 ~ 18600493 (-) True G119148
TU137786 lncRNA upstream 11581 18601933 ~ 18602349 (-) True G119447
TU137787 lncRNA upstream 12119 18602471 ~ 18602685 (-) True G119448
TU137805 lncRNA upstream 36606 18626958 ~ 18627700 (-) True G119458
TU137791 lncRNA upstream 37560 18627912 ~ 18633524 (-) False LOC110534340
XM_021622444.2 mRNA downstream 144 18564603 ~ 18586875 (-) False LOC110536757
XM_036940539.1 mRNA downstream 144 18564603 ~ 18586875 (-) True LOC110536757
XM_021622434.2 mRNA downstream 145 18564603 ~ 18586874 (-) False LOC110536757
XM_021622438.2 mRNA downstream 145 18564603 ~ 18586874 (-) False LOC110536757
XM_021622453.2 mRNA downstream 22826 18559793 ~ 18564193 (-) True LOC110536762
XM_021622480.2 mRNA upstream 12693 18603045 ~ 18605641 (-) True LOC110536796
XM_036940612.1 mRNA upstream 39643 18629995 ~ 18646882 (-) False LOC110534340
XM_036940606.1 mRNA upstream 39643 18629995 ~ 18646884 (-) False LOC110534340
XM_021622578.2 mRNA upstream 72252 18662604 ~ 18672410 (-) False grwd1
XM_036940626.1 mRNA upstream 72252 18662604 ~ 18672410 (-) True grwd1
TU137371 other downstream 44522 18541052 ~ 18542497 (-) False LOC110536756
TU137320 other downstream 110266 18476454 ~ 18476753 (-) True G119087
TU137198 other downstream 153351 18427562 ~ 18433668 (-) False G119000
TU137031 other downstream 314912 18268548 ~ 18272107 (-) False khdc4
TU136972 other downstream 421906 18162309 ~ 18165113 (-) True LOC110534274
TU137801 other upstream 47529 18637881 ~ 18646663 (-) True LOC110534340
TU137868 other upstream 209148 18799500 ~ 18801387 (-) True G119512
TU138073 other upstream 457955 19048307 ~ 19049030 (-) True G119663
TU139386 other upstream 893985 19484337 ~ 19488232 (-) False cacng6b
TU139389 other upstream 895297 19485649 ~ 19488232 (-) False cacng6b

Expression Profile