RNA id: XM_021622521.2


Basic Information

Item Value
RNA id XM_021622521.2
length 2796
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110536807
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18606074 ~ 18621580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAactgacaggctgacagacacacagcagtgttatttctaacttctctGCCACTTCCTGTCTTCCTATCTAGACAGGCTGACTGTTTCTTAGTTCAGGGAGTTTGTTTTAATTGTTTTAAGCTGAGAGGTTGACTGTTGACAGTTATCCTTCTGACTTTACAGCTCTTCCTCTCATTCACTTGGACCTTCTGTGTTTTCATCACTTGGATTCTACTCAAACTTCTTAGATTTTCCTGCCTTGTTTTTTTCATCTCCTCTGAGCATAccattctctccctttcccccttcaccctctcttgTCCTCCCATCTCCCCACCGTTCCCTCTGTCCTGGTGGTTTTCGGGCTATGCACCATGCTCTCTTCTCCTACAATGATTCTTCAGCCTTACGGACTGCCCGTCTATCCCCAGGGTGCCCAATGTTACCCCAGCCTAGTACAGGGAGGCCCTGGGCAGGAGGCCTGCCCCGGCAGTGGTGACCCCACCCTCCCACAGGTCTATGCCCAGCCTCCCTCATACCCTCCACCAGGACAAGCTCCTCCCACACCGGCAGGCAGACTTCCTCCTCTAGACTATAGTTCCGCCCACCCCAACTCAGAGTACCAGGAGCATCACCAGCTCAGAGTCTATCAGGGCCCGCAACACGAAGGGGCTGACACTCTGGCAGCCATTAGCACGGACGATGCCCTGGTTCCGGTGACCTCTGACTCCCAAGCTCTGAGCATGTCAGTGTCATCAGGGGGCGGAGCAGGAAGTGGTAGCGATGAGGAGGGGTCAGGCAAGGCCCAGCCCAAGCGTCTCCACGTTTCCAACATCCCCTTCCGCTTCAGAGACCCGGACCTCAGACAGATGTTTGGGCAATTTGGCaagatcctggatgtggagattATCTTTAATGAGAGAGGGTCAAAGGGTTTTGGGTTCGTGACCTTTGAGAGCGCAATGGAGGCAGACCGAGCGAGGGAAAAACTGAACGGAACGATCGTTGAGGGGAGGAAGGTTGAAGTGAACAATGCTACAGCCAGAATAGTCACCAAGAAGCCCCAAACACCTCTTGTGAATGGTGAGGTTTCAAccCCTGGATGGAAGATCAACCCTGTCATGGGAGCGATGTATGCACCTGAACTCTACACCGttGCCAGTTTCCCCTACCCCGTAGCTGCTCCCACCCTGGCCTATCGGGGCTCACCACTGCGTGGGCGGGGCCGGGCTGTCTACAACACAATTCGCTCAGCTGCCGCACCCACTGCCATGCCCGCCTACCCTGGAATGTCTCCTTTCAGTGTGCTGTACCAAGATGGATTATATGGAGCTGAAGTCTATGGCGGTTATCCTGCAGCGTACAGAGTTGCCCAATCACCATCCGCTGCCACAGCAACATACAGTGATGGATATGGCAGAGTTTATGCTGCTGCAACGGATCCCTACCACCATTCAGTGGGACCCACGGCAACATACGGCGTCGGAACAATGGCCAGTCTGTACAGAGGAGGATACAACCGCTTCACCCCTTATTGAGCTGCCCAATGAGAGCCTGGAAGCCGTTCTGTGACCCCGCCACCTCATCCGGGATTGGCCAGTCCCAGGACAATAACTCAGGACAGGTTATGACATCACTGAGCTCTGTGTCACCTCCTGTCTGACTCCCTCCACTTGGAGACCGATCCAACCGACTGGACGTGTAAATACTGTAGTAGTTATTCACTATTTATTCTATCAGAGAATACATATAGGATAAAGAGCCTGATCTAATGTATAGACAGTTATTTAAAATCTTTATTTTACACTTAATCTGTATTGTTTGTGCCACAGATTTGTTCCAGGGTTTAAGAATGTAAAGATTTCTGCCTCCGTACCTGGGTTATAAGCTACTCTTTCACTATTCTAACAGAGAGAGTTGAATGTGAGCCATTTTATTTTTCATTGGCTGGACTTCATGGTGAAATACTGCAACTCAAGTGGCACAACAATACTGGTTTCTCTACATGTTGACCTTTGTAAAAAACGTTTTTGATCAACGTCTGAGCTTTTGACTTTTCAAGAGTCAAATTGTAGAGTACAATGACATTTTATACAGTTAAATTACTTAGTTTTGATGACACTGGTTTTGTCAATGATGTAGAGCACTGTTTGAGGacgttgaagtgtgtgtgtgtgtgtgtgtgcttgtgtgtgggaGTATGTGACGACATCAATACTCAAAACACAAGCTATGAGAGACAGCAATGGCACTGGTATTGTAAATGTGCACAGTAATCTTTTTTGAAATGCTTCTAGAACCCTAAAACTATAATTTGCATAAAATGTACATATGTTTTTGCTTTCCTAACAATCTACCTCTGATTCTAAAAATGTTTCACTTGTCAAAAAAGCATTCAGGAGCCATTACTTCTCTCAACTAATTAACTGTAACAAAACATGTTTTCTTATTTTCATTGTTGAGCTTCTATCCATCTTCTCTCTGCTTTGCATAATGCTCACCCCACTTTATCATTTTTCTATGGCAGCCTCATTCTGGGTTTTACTTCGCTCTGCCTGACGAGCCTGTAACCTCTATGGTGCTTTCCCTTATTTCCTCTGTCCTGTTAAACTCTAGGACGTTGTCTGGtttcctcttcctgttctctCGCCTGCTTCTCTCCATTCTGTTTGAGGATCTGTGTTCCATCCATAGAAATAATCAGATGAGTTCTAGTTCTATGGgtcatctctccttctccatcctgtACTCGAGCTTCACTGTTGTTTATTTGCTGTTGACCTCTCAATAAAACATTGTTTCTgtttccctttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137294 lncRNA upstream 13264 18592511 ~ 18592815 (+) True G119076
TU137289 lncRNA upstream 20000 18585876 ~ 18586079 (+) True G119071
TU137284 lncRNA upstream 25667 18580204 ~ 18580412 (+) True G119066
TU137283 lncRNA upstream 26980 18578720 ~ 18579099 (+) True G119065
TU137282 lncRNA upstream 28499 18577309 ~ 18577580 (+) True G119064
TU137404 lncRNA downstream 41039 18662619 ~ 18663111 (+) True G119159
TU137484 lncRNA downstream 119114 18740694 ~ 18743720 (+) False G119222
TU137488 lncRNA downstream 119114 18740694 ~ 18744243 (+) True G119222
TU137427 lncRNA downstream 172123 18793703 ~ 18797176 (+) True LOC118938256
TU137510 lncRNA downstream 200308 18821888 ~ 18822563 (+) True G119241
XM_036940483.1 mRNA upstream 49482 18545526 ~ 18556597 (+) False LOC110536748
XM_021622568.2 mRNA downstream 31380 18652960 ~ 18657794 (+) True cdc42ep5
XM_036940638.1 mRNA downstream 86055 18707635 ~ 18720399 (+) False leng9
XM_036940631.1 mRNA downstream 87275 18708855 ~ 18720399 (+) True leng9
XM_036940656.1 mRNA downstream 99835 18721415 ~ 18755200 (+) False ttyh1
XM_036940667.1 mRNA downstream 99837 18721417 ~ 18752689 (+) False ttyh1
TU137225 other upstream 128945 18476424 ~ 18477134 (+) False LOC110536658
TU137226 other upstream 129725 18457358 ~ 18476354 (+) False LOC110536658
TU135495 other upstream 1148057 17455765 ~ 17458022 (+) True G117735
TU135611 other upstream 1184419 17410632 ~ 17421660 (+) False LOC110520798
TU137398 other downstream 12259 18633839 ~ 18636041 (+) True G119153
TU137405 other downstream 48933 18670513 ~ 18672320 (+) True G119160
TU137542 other downstream 337556 18959136 ~ 18961465 (+) False G119245
TU137673 other downstream 635006 19256586 ~ 19257494 (+) False LOC110503718
TU138223 other downstream 885071 19506651 ~ 19507338 (+) True G119794

Expression Profile